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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009626 ID=TCONS_00009626|Name=TCONS_00009626|organism=Clytia hemisphaerica|type=transcript|length=1456bp
GTCAATGAATAAGGACATATTAAGTTTCCTTGAAAAGTCAACAAAAATCT
GCATATTCAACCTTTTTAGCAAACCGTTGTTATTTTATGGATACAGCAAA
AACTTTGATACAGTTTCATAGTGGGAAGAGttaaaagagagagagagaaa
taGGGAACTGATAAGAGAATaaactttggaaaataaaatcAGTTAAATTA
TTGGGTCATCAGATTCAGAAGTCAAGATGGCTGACCGCCATGGCCTAGTA
ATGATTCTTTTGCTTTTTTGCGTTTATTTGGTGATGGTTGAAGCGCAGTT
TAAGAATTGCTacaGCCGTTCCCCTATGCAGTTTACAACAAATATTCCCT
CACGTTTACGACAAAATCCATTCCATTTGGTTGCTAAGGGAACGGTGAAG
TCTCCAATCAAAGGCCCTTTCACTATCGCTGTTGACGTACGAAAAGAATG
GTTTCCAGGCTTTTGGAGTAAAATTCCGTGTGTTCATCTCGGGTATAAAT
CCTGTAGATACGAATTGAAGCAAAATGACATTGAGAAGTTCTGGGACATG
AAGAAACATCAGATCACCCTTTTCGATAAGGATatcgatttgaaagattt
tcctcGTGATCTACTTAAGGGTCGGTACAAGGTTGTCGGTACAATCTGGA
AGTTAAAACCACGCAAGAAAATGTTGGGTTGCGTTCGAGGTTATTTCTCT
CTCGATGTTACTGCCTGAGCATGTACATGCTTGTGATTCAGCATCaagaa
tctttcttttttgtgaaatataattctttcATTATAgcttcagaattttt
tttttcagaaaaaattacgTTATATTTCGTCAACATACCCTTCAAGTAgg
cacttcagtcacgtgactaaaaatcgtCACGAAGGTTTAGCGGGAAGCGT
TCTTTTATAAAGACgggattttgtattttttcaaatacattcttttatca
aaatatggtagggtttttttaaatgactgcTTCCTAAAGACGAAATGATG
TCAACATCCAAGTTTAGGGGGCCCTTTAGGGGGTTTTTACTTTAGATTTA
TAAAATCCGAAgtgctagatgtcgtgcttcaagccatcacaggcaaaaaa
aaattgaatatcgcagaaaatattgttgctatttttttcgaaaagccGTG
AAGCTTCTGATTAGTCAagcactgaaattctattgtaatgtcacgtgacc
taggtaggatttcatacctaaccacggcacacttttcagccaaaccACGA
CATCAGCCCTTCGGTCTTTAAAAATCCATGGTTTTTACCATTTGTTAAGG
AATATATCATTCTATATGTCAATTTTTGATGCTAAATTGGTGatagattt
ttggaaaaacatttaaaaaaagtgattttACTAAATCTAAAACTAAAATC
CAAAGTCAACTTTTTACGAAGTAAAGACTCTTCTGCTGTGATGTGAACCT
TCCTAT Run BLAST on NCBI transcript from alignment at sc0000097:191862..196746- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009626 ID=TCONS_00009626|Name=TCONS_00009626|organism=Clytia hemisphaerica|type=transcript|length=4885bp|location=Sequence derived from alignment at sc0000097:191862..196746- (Clytia hemisphaerica)
GTCAATGAATAAGGACATATTAAGTTTCCTTGAAAAGTCAACAAAAATCT
GCATATTCAACCTTTTTAGCAAACCGTTGTTATTTTATGGATACAGCAAA
AACTTTGATACAGTTTCATAGTGGGAAGAGTTAAAAGAGAGAGAGAGAAA
TAGGGAACTGATAAGAGAATAAACTTTGGAAAATAAAATCAGTTAAATTA
TTGGGTCATCAGATTCAGAAGTCAAGATGGCTGACCGCCATGGCCTAGTA
ATGATTCTTTTGCTTTTTTGCGTTTATTTGGTGATGGTTGAAGCGCAGTT
TAAGAATTGCTGTAAGTTTACAATCGTCCCAAGAGGTCAAATAAGGATGC
ACCCTTATAACTACTTTACACTAGCAAAGTTAATGTACTAGCATGATAAT
ACGATTATTGTTACGGGATTTAGTTTGTATAAACTAAAATTGTTCCCTCC
ATTACTCATTGCTTTATTTCTACTATGTCTGAATCAGTCGGCTAGCTTGC
TAGACTACTATACCTATACACCTTTTCGACTGTAGCCGCCAATTACCGTG
CAGGTATTTTTTTGTCTGTTTTACCACCCTTAAACCGTCCTAGTATTTCT
TTGCACCTAAAGACAATAGAAAAAAGTGTAAAAAAAGGATCGGATCGAGT
TTAGGGTGGCATGCAGTAGTGGCACGCGCCTGACCGTGCGACTACAGTCG
AAAAGGTGTATTCTTTTCATGGAAGGTCATGTGATGAACTGCAGTGGAGT
CTCCATAAGTCGAACTTCTATTACTCGAAAGAAACGCAGTCCAGTTTTGA
TATTTTTACTAGACAATAATAACCACATCATCTTCTAAGGTTGACCTTCC
GTCTTATATTTCTTTTTTTCCAGACAGCCGTTCCCCTATGCAGTTTACAA
CAAATATTCCCTCACGTTTACGACAAAATCCATTCCATTTGGTTGCTAAG
GGAACGGTGAAGTCTCCAATCAAAGGCCCTTTCACTATCGCTGTTGACGT
ACGAAAAGAATGGTTTCCAGGCTTTTGGAGTAAAATTCCGTGTGTTCATC
TCGGGTATAAATCCTGGTAAGTAGTCTTTGTACATCCCTGTAAAGATTTT
GTGGTGAAAAGTGACATTTTTCGAATGATAGAAGTTTGAATTAGTGCGAG
AGTGCGCTGTTTATGACTCTTCCGCTCGAAACTGTTTTTCAAATGAAAAA
AACCTTCAGGTCTGCGTTTTAGACTTTGTTTGTAATACTGTACTCTTTTA
GAACTTCTCAAAGTCAAGGGACCAATCAGATTCGTAAAATTTCGTTAGGT
TGACCTTAGCGAGTTTATGTATTTGCATTTTTGAGGACGGTACAGTGGAG
TGACTGAAGCGATTTGGAATAACCCAAAGTTCTGACCCGCAAAATCGCAG
ACGGCAAAAGTCCTGATTTACCATCGTCCTCAGTTGGTCAGGATCTAGTC
AAATTAAAACCTTACCGTCTCCGTNCACCTAAAGACAATAGAAAAAAGTG
TAAAAAAAGGATCGGATCGAGTTTAGGGTGGCATGCAGTAGTGGCACGCG
CCTGACCGTGCGACTACAGTCGAAAAGGTGTATTCTTTTCATGGAAGGTC
ATGTGATGAACTGCAGTGGAGTCTCCATAAGTCGAACTTCTATTACTCGA
AAGAAACGCAGTCCAGTTTTGATATTTTTACTAGACAATAATAACCACAT
CATCTTCTAAGGTTGACCTTCCGTCTTATATTTCTTTTTTTCCAGACAGC
CGTTCCCCTATGCAGTTTACAACAAATATTCCCTCACGTTTACGACAAAG
TCCATTCCATTTGGTTGCTAAGGGAACGGTGAAGTCTCCAATCAAAGGCC
CTTTCACTATCGCTGTTGACGTACGAAAAGAATGGTTTCCAGGCTTTTGG
AGTAAAATTCCGTGTGTTCATCTCGGGTATAAATCCTGGTAAGTAGTCTT
TGTATATCCCTGTAAAAATTTTGTGGTGAAAAGTGACATTTTTCGAATGA
TAGAAGTTTGAATTAGTGCGAGAGTGCACTGTTTATGACTCTTCCGCTCG
AAACTGTTTTTCAAATAAAAAAAACCTTCGGGTCTGCGTTTTAGACTTTG
TTTGTAATACTGTACTCTTTGAGAACTTCTCAAAGTCAAGGGACCAATCA
GATTCGTAAAATTTCGTTAGGTTGACCTTAGCGAGTTTATGTATTTGCAT
TTTTGAGGACGGTACAGTGGAGTGACTGAAGCGATTTGGAATAACCCAAA
GTTCTGACCCGCAAAATCGCAGACGGCAAAAGTCCTGATTTACCATCGTC
CTCAGTTGGTCAGGATCTAGTCAAATTAAAACCTTACCGTCTCCGTCGCA
GAAAACACACATGCATAAACTCGCTATTTATACTAAAAACAGATGATATA
TAATTATGATAGAACCATAGTATTGTTGCCANGGTCTGCGTTTTAGACTT
TGTTTGTAATACTGTACTCTTTTAGAACTTCTCAAAGTCAAGGGACCAAT
CAGATTCGTAAAATTTCGTTAGGTTGACCTTAGCGAGTTTATGTATTTGC
ATTTTTGAGGACGGTACAGTGGAGTGACTGAAGCGATTTGGAATAACCCA
AAGTTCTGACCCGCAAAATCGCAGACGGCAAAAGTGCTGATTTACCATCG
TCCTCAGTTGGTCAGGATCTAGTCAAATTAAAACCTTACCGTCTCCGTCG
CAGAAAACACACATGCATAAACTGGCTATTTATACTAAAAACAGATGATA
CAATTATGATCAAACCATAGTATTGTTGCCATCCAACCTTTCCATCTTTA
ATCAGTAGATACGAATTGAAGCAAAATGACATTGAGAAGTTCTGGGACAT
GAAGAAACATCAGATCACCCTTTTCGATAAGGATATCGATTTGAAAGATT
TTCCTCGTGATCTACTTAAGGTAAACTTTGACACTTTGCTTTTCTCGATG
TGCTATTTAACCCTTCAAACCCAAGGGGGGGGGCGTACGGGATATCGGTA
CATCGGTATTGGCCTTTTTTTAGATCGGTAAATCGGTACTAGAGGAAAAA
ATTGATCGGTAATCGGTATTTTAAGACCATCTCGGTATCGGTGAAAGACC
CTTTTTTATGTCGGTATTTCGGTATTTTTGGTCAACTATCGGTATCGACC
ACCTCATTGGTATCGAAGATCATGAGCCATTGCTCTCCAAAACCAATTTT
GGTGGAATAAATTTTAAAATCTTAGTCACCATAGAGACTTTGGATGGTGA
CAAACCCAAGCTTTATCGTCCACACATACCCAGCACCCATATTTGCCTAA
GTACCCCCTCCGGGAGATAAGTACCTCAAAAATTGGGAAAAATTGATCGG
TATCGGTATTTGAGCGAAAAATTTATCGGTATATCGGTAATTGAGAGAAA
AAGTGATCGGTATATTGGTATTACGAAGGCCCGTACGCCCCCCACACCCA
AGTGACGTGCATACACGTTCTAAATTTGCCAATATACCAAGTCTCAAACT
TAAGGATATAACTCCTGACCACTTGATTTAAAAAGGCAAAAACGAATGCT
TTTTAAAAAAAGTATAGAAATACCTTTTCAATGGTACCAAAACCATTGTC
TAATTCTCAAACTACAAGCTTTTATGCTAAGTTAAAATTTTGAAGTAAAA
AGAAAAAAAAGTTAGAAATTTTCACATTTTTCAAAAAATGCTGCGCTCTG
GAAAGTTTAATAACTTGAATAATCAGATCGTGATTGCCTCTTGTATACCA
CACTGAAACTCTAAAGGGAGAGGTGTGAGAACAAACGCTCTGGCGAATAT
GCGATTCTTTGCAAAGGAAAATAGGAATGACAACAAAGTTGCGTGAATGT
GTTTGAAAATAAGGCGCCATATCAAGTCAACAAGATTCTTGTTCCAGAAT
TTTCCACGGGAGTACTATTTTCCTCCGATAGTTAATTTTCAAGAGTCTTT
AGAGGTTTACGGTGCATGTAAAAAAACTATGAACAACCATTATCAGGTTA
GTAAAAGATTACACTGCACTCATATTTTATTTGATTTTACTATTATAGGG
TCGGTACAAGGTTGTCGGTACAATCTGGAAGTTAAAACCACGCAAGAAAA
TGTTGGGTTGCGTTCGAGGTTATTTCTCTCTCGATGTTACTGCCTGAGCA
TGTACATGCTTGTGATTCAGCATCAAGAATCTTTCTTTTTTGTGAAATAT
AATTCTTTCATTATAGCTTCAGAATTTTTTTTTTCAGAAAAAATTACGTT
ATATTTCGTCAACATACCCTTCAAGTAGGCACTTCAGTCACGTGACTAAA
AATCGTCACGAAGGTTTAGCGGGAAGCGTTCTTTTATAAAGACGGGATTT
TGTATTTTTTCAAATACATTCTTTTATCAAAATATGGTAGGGTTTTTTTA
AATGACTGCTTCCTAAAGACGAAATGATGTCAACATCCAAGTTTAGGGGG
CCCTTTAGGGGGTTTTTACTTTAGATTTATAAAATCCGAAGTGCTAGATG
TCGTGCTTCAAGCCATCACAGGCAAAAAAAAATTGAATATCGCAGAAAAT
ATTGTTGCTATTTTTTTCGAAAAGCCGTGAAGCTTCTGATTAGTCAAGCA
CTGAAATTCTATTGTAATGTCACGTGACCTAGGTAGGATTTCATACCTAA
CCACGGCACACTTTTCAGCCAAACCACGACATCAGCCCTTCGGTCTTTAA
AAATCCATGGTTTTTACCATTTGTTAAGGAATATATCATTCTATATGTCA
ATTTTTGATGCTAAATTGGTGATAGATTTTTGGAAAAACATTTAAAAAAA
GTGATTTTACTAAATCTAAAACTAAAATCCAAAGTCAACTTTTTACGAAG
TAAAGACTCTTCTGCTGTGATGTGAACCTTCCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009626-exon-sc0000097-1575043694:196436..196746 | TCONS_00009626-exon-sc0000097-1575043694:196436..196746 | Clytia hemisphaerica | exon |
| TCONS_00009626-exon-sc0000097-1575043694:195681..195873 | TCONS_00009626-exon-sc0000097-1575043694:195681..195873 | Clytia hemisphaerica | exon |
| TCONS_00009626-exon-sc0000097-1575043694:193827..193941 | TCONS_00009626-exon-sc0000097-1575043694:193827..193941 | Clytia hemisphaerica | exon |
| TCONS_00009626-exon-sc0000097-1575043694:191862..192698 | TCONS_00009626-exon-sc0000097-1575043694:191862..192698 | Clytia hemisphaerica | exon |
| TCONS_00009626-exon-sc0000097-1510915933:196436..196746 | TCONS_00009626-exon-sc0000097-1510915933:196436..196746 | Clytia hemisphaerica | exon |
| TCONS_00009626-exon-sc0000097-1510915933:195681..195873 | TCONS_00009626-exon-sc0000097-1510915933:195681..195873 | Clytia hemisphaerica | exon |
| TCONS_00009626-exon-sc0000097-1510915933:193827..193941 | TCONS_00009626-exon-sc0000097-1510915933:193827..193941 | Clytia hemisphaerica | exon |
| TCONS_00009626-exon-sc0000097-1510915933:191862..192698 | TCONS_00009626-exon-sc0000097-1510915933:191862..192698 | Clytia hemisphaerica | exon |
| TCONS_00009626-exon-sc0000097-1491911889:196436..196746 | TCONS_00009626-exon-sc0000097-1491911889:196436..196746 | Clytia hemisphaerica | exon |
| TCONS_00009626-exon-sc0000097-1491911889:195681..195873 | TCONS_00009626-exon-sc0000097-1491911889:195681..195873 | Clytia hemisphaerica | exon |
| TCONS_00009626-exon-sc0000097-1491911889:193827..193941 | TCONS_00009626-exon-sc0000097-1491911889:193827..193941 | Clytia hemisphaerica | exon |
| TCONS_00009626-exon-sc0000097-1491911889:191862..192698 | TCONS_00009626-exon-sc0000097-1491911889:191862..192698 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000097 | supercontig | sc0000097:191862..196746 - |
Blast
The following BLAST results are available for this feature:
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