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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009598 ID=TCONS_00009598|Name=TCONS_00009598|organism=Clytia hemisphaerica|type=transcript|length=2176bp atgatggtgATGATATCGCTATAAATTTGGCGACACGCCCCGAATGTTTG GTGCGGTCTTTAAATACCCCGGAATTCACACTTTTTGACGAGCCATTTCT TCATAAATCCGGAAAACTACACTTATTGGGCGCCGAATATTGAATAATGG ATGTATCGCTAAAGGGGAAGGTGTTTGAATCAGGGAAAGGTgagttttaa atttcaattcataAATCTTGCAAGAGGTTATTCAAATTTCTGCTGCCTCG AAATGTAAACTAAGAGgtaaaatttgatttaaaaggtAGAGTGATATTGT GTAGATGGAATGTGAAGaaaaaatcaggattttcattattttgaaaaata tttttgttgtgtTGTTTTCCTACCTACTCGTCACTTCACTGTcaagagaa gaaaatgtttCATTCCAAAGGAAATTTGCTTCAAAAATACAAGGGGGCGA TCATCTTCCTGTTTGTCATCCTATTTATAACAATCTTGCTGGTCACACTA TACCTTATGTTAAAGAAAGGcttctgttgttgttgttgcaacAAAGAGAA AGAGGACGAAGAGAGTCTTTACACTGACCTCGAGCATGATGAAGAAGACG ATGAGATGGAGGGTCATATCCCTCCTCCAAAAGGTGAACTTCTCCACAGC GGTGAACATCACTTAGAACCCGAAGAACGTGCCGTAGAGGAGCAGGAACA TCACATTCCGGAGATCATCGTCACCGAAGGTCATTTCGTCCCTGAGAAGA AGAGCAAGAAAAAACAACTGTCCGGTATGTTGAAACGAATGCGACCGGGC AAAGGAAAAGTCCGATTTAGCCCGTCTAGTGAACAGATCAGCATGATAAG TTCAGAAGGTAGCACCATTACCAGCGATTACGGATCGACCACGAATTCCT TACCTATTCACAGATCAGATTCTATGGAGAGTTTCATGTCGGCTGTTTCG GCCGCTACAACGAACAATATCGATGAGTTTGGAGATGAACTTTCTCCGAG TCGTTTGCAAGTTTTTTTACATTATGATCCGAAATTATGGACTTTGACAG TAGGTGTCAAGCAAGCTGATTGCTTAGTATCGACCACAGGTAGTGCCATG TATTGGCAAGCACATGTAACAATATTACCCTTTAAAAAACATAGATTCAA AACGAAGTATAAGTCGACATCGACACCAATTTTTAATCAGAACTATGAAG TAGAAAACATCGCGCAACAAGCCCTCTCACAGCTTTCCGTTCGTTATCGG ATCTACGGCCGTCCAGGGCGAGGTGGGCGTAAAAAGCTGGCGGGAGAAAC AGAAGTTGAACTTTCACATATAACCCAGATGGAGGATATGATAATAAAGG ACTGGCGTGTTTTGAGGCGTAAAGGTGGACCTTTCATCCGCCATGAAAGT GAAGTTTAGATGTTTAttttaaattcttatttttgggAGGGCTATAGTgg tatatattttattttctagttttatttttctcgtgttgttttttattaat gacattttttgAAGGCTTAGTGTAAAGGGCTCTGTCCAGAGAGGAACCAG CTTCTAATTTGCAACGAAAAATTTTTCTATTCAGATATATTAATGATTAC TCAAACTGACTCGGTGAACtctgaagaaaaattaaaaggagCTGCATAAA GATGAATCTccctcttttttataaaaattactcATTTTTAATGGGTTATT CACTGTTATGTTCtattgtattttaatttttttacattttaatttaCAAC TTGGGGTATTTTAAGTGAAAAGTACATGGCAAATATGGAGAGATCACTTT ACTTAGTCAGAGCCCGGAGAACTGGCATAATTTTATAGTAAAGACAGAGA CTTAAGGGGAAGCACAATTTTgacgttttgatttttgaattcagACTTTA TCTTTTGTTCTCTGATCAGAGACTAGAACAATTATATCATTCTATCAAAG TTTCCAAACCTGAAGCTTTTACCTGTCGATGTAGAATAATTGGTAGTAGT ATTCTTGTTAGATTTTTTAGTAGCTAAATTAagggagatattttcgtgtt tttctaaccaacattttctttttttaattcatttttataTGTCATCATCC ATACTTGTAAAAATAAACCATTAATAGTCTACTACGATAATTACACACTA CATATGCAGCAATCgtaattcaaaaa Run BLAST on NCBI transcript from alignment at sc0000097:528735..537323+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009598 ID=TCONS_00009598|Name=TCONS_00009598|organism=Clytia hemisphaerica|type=transcript|length=8589bp|location=Sequence derived from alignment at sc0000097:528735..537323+ (Clytia hemisphaerica) atgatggtgATGATATCGCTATAAATTTGGCGACACGCCCCGAATGTTTG
GTGCGGTCTTTAAATACCCCGGAATTCACACTTTTTGACGAGCCATTTCT
TCATAAATCCGGAAAACTACACTTATTGGGCGCCGAATATTGAATAATGG
ATGTATCGCTAAAGGGGAAGGTGTTTGAATCAGGGAAAGGTgagttttaa
atttcaattcataAATCTTGCAAGAGGTTATTCAAATTTCTGCTGCCTCG
AAATGTAAACTAAGAGgtaaaatttgatttaaaaggtAGAGTGATATTGT
GTAGATGGAATGTGAAGaaaaaatcaggattttcattattttgaaaaata
tttttgttgtgtTGTTTTCCTACCTACTCGTCACTTCACTGTcaagagaa
gaaaatgtttCATTCCAAAGGAAGTAAGGATGCTTATTTTGCTTCTTGGT
GACCATTGAATACATTGAATATGTCACTTTTAACTTCTGTAAAGCCATAC
AAACATGCTTATTATGTCACTTGTCCAGCTACTTCTGTACAGGGCTGGTT
TCTACCTTTTTTTTGAGACATATAGCATGATTTTGTTTTGCAACtcagaa
tgaaaaaaattggttttagTAGCTATTTAAAGCCTTTGTGAATGAAAAAT
CCCCTGGGCTCTGCCCTGATAAATTATATACTTTGGTGCACTTATTTTTT
GTGCtgtatttttgttttgcttcttGCGCTCTGAGCAGTCtctgacagtt
agtcacactaggaaatctagctttcagaaaaaacaacatcagtcatctac
aggatatatttcaacaacaaggatgagagttacctgaatcaagNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNgcatttttttgcttgagagtcaagtaaacgatata
gcgctttcgcagcattaatctttgatacgcattttggcgggacgctagtg
tggctaactgtcTGAGTCTGTTTGCAAGTGGCTCTTATTCCAGTTTCTAC
ATCGCTACAGTATCATGAATAATAAAGAGTTAAACTGGGATGTGTACTGC
AATCTACTGGAAGATACCAATGTCATACGGTCCCATTAACAATAAAGTAT
GATGTATAATTAGTCCCTCTAGAGACTACTACAAGAGTAAAGTATGAAAA
TctccaaaatcaggaaaaactgtGAATTTATGAAAGAGTCGTACGTAGCC
TTTTTTTGAAACCTAGAaacatatatatatttttaaatatcCCCCAATTT
GATGTATGAAATGTTCCTAAAATATTTGACCATTGATTGAATTCTTGGAT
GCAAAATGCATTTCTCTATAACTTCTTGTTCACAGGAAGGAAAATCCTCT
GATCTTTCCAAATGCTATTAAAACGTAAGATTTGTGATCtcaataaaatt
ttaagaaaatcaaaatgttttgtGGTATGTCAATCAAGTTAAGACAGGTT
AACATTTAAACAAGATACAATTGTCAACTTATATATCTAGTGAATTTGAA
AAGAGACTCAACAACAATTTACTGAAGAGACTGTCACAATATGTAACATA
GTAAGTATGCACGATATGACTGTAAAAAGAATTGAGCAATAAATGATAGC
TTCTTGTAATCTTTTATACTTCAAAACCTTACCATATTCCAAGCTTGCTA
TTTGAATGATTCTTATACAGTATATATTGATAAAGATCTTAAGAGATGGT
ATtacaaaatgacttattttgaaacaaaagttttttttaaagcagAGTAT
AAATTCCTGTATTTCTGTAAATTCAGTTGTAactatttgaaagtttttta
aaaattgatttcagCAATACATattcaaaaatgaaagagagtaagtatat
aatattatatttttcagtctttttttttgttttttttgaggATTGGATTG
AATGACCATTTAATCATAACTTGctattgcaatttttttctcagCAAGGT
TTCTTCACGCTTAAGTTAAGGCAGAATATTGCTATACCCTGTATTTATGC
TTTAAAGTCATCATCTGCTATATGTGAAACTTTTTCTAATCCATCTATct
atttatctatctatctatctatttatctatttattttttaaagtatcATA
AGATGCAATCTCATACTCGCCAAAAAGGCCCATACTGTAAaacatactct
cgggtacctaatagccggggggtttggaataagcgggggggggttgggaa
aaatctcaaaacttaataggcggggggttggaataaaaatgtcctgggtg
gaaaattttcgaaaaattaattagcgggaggacggctattaggtacccga
gagtatttgTGACCCTCTAAGCATTGTCAATTTACCCTTTTAATCTAATA
ATATGTTATTCCAATAAGGGAATTCTTGATAAACATGTTTAACAATTAAA
TATAACTGCATGCCCCCTTTAAAGTTGTGAAAATATTCTGGGAAgttctt
taaacttttaaaatcagcaaatcttGTGAGAAAAGTAATTCCAACAAAGT
ACCTAGTCTGTACTCTGTTTCTATCCTCCCTTATGAGCTTTATGtgttaa
aaaactttcaaaggcCTTTGAACTTATGATGAAATACTTTTTCATTGTGT
TTAGTTTAGAAAACAAAATACCGTGTTGGTCTAAATAAGATATTGTTCct
ggaaaaagaaagaaaacttcATTTCTGTCTTTACCAATATCCCTTATTAT
TAAAAAACTTATTTTGTTAATGagatctgaaagaaaaattaaaataaagc
cCAAAACACTGCCCGAACTGTGTATTTCCAGAAAATAGTTCATAGTGAGC
ACAGTAGACTTCATTTTCTTCATGTAACTTTCTGAGAATATTGGATATTA
AAAAGCTAAAATTATTTTACTCACTAAGTTCTTGAGTTCTTGCTTGTCAA
AACTCCTAAAAAAACTAAATAGTATTAAAAATTGTATTCCTCTATAAGCT
TTTTAAAATATCATCTTTCTTCCAAACGCCTTTCTTCAAGTCCAATAAAA
AAGGGTTTATTTCTCATCATATCCTATAATATGTATAATATGATCCAAGT
ATTGACATCCTACCTCCTTGTTATAACTACAGTAGATAATTAATAAACAA
AACTCCACCTTGAATTGAGGTAAAGAATGATAATTTCAATAATCATGATG
ATAAACTGATTATGAGACCACTCTAAAAACATGAGCATGAGTCTGTTTGA
GATGTCTAGTCTTATTGAATAATCATCAATGTCATAAACagtatataaaa
acaaaaagattatgtGATAGTTTCTATTATTACATTTTGAACTGTCTTCC
CTTTTAGAATCAGTGTTTGAAACTAGAATGACACTGTTACTTTAGACAAT
ATGTCTTGAAACTATCTCTCTAAGATGAAAATGTTACTTTTGAATATAGT
TTtttaaaacaaagatttagtaTAAAGATTTGATTTGTGACTTTGTTGTT
GAATGCATTTGAAAAGATTGACCTATTTACATAGGGTAGTTGAAAGAAAT
CAATTAAATATTAGTAACATTTTATTTCACTTGAAAGATTAACATTGACA
ATCTTAAGGAAACTaacttttttatcttctttctCCATGCTCTGGCAACc
tctttatcaaataaatttgattCAACATTAACAGTTGATAAGAAATTCTG
ATATTATAACTCAACTAGCCCAATCATTTCTCTACGAATACTTCTCTCTA
TCAAGCTACTAAAGTTAATGGTCCCACTCCTAAGAGCCAACTATTTGCCA
AACGAATTTGCTGTCATAGCAACATAGCataaattacctatttcatTATA
TTTTGAATAGCACTCAACAATTAGTTTCTCTAACAACTGTATAGCAACGA
AATGAGGTGTGTTGCACTCTAATGTCTCATGTCAgcttttggtttgtttt
gtagTAGTTGTTGTGAGTAAAAATAGTTTGAGTCCTAAAGTAAACATTGA
ACCTTTAGTAATATGCAACAGCTTTTTTTCATGACAGTGTAGTCTAGTAG
GatggttttgaaaattatataaaCGTTGAGGGAGTTGTGTTTTGATTTAC
TTGGTGTCACTCAAATAATGTTAGATTCGTATTATCATAGTTTACATTAT
GATATAATAGTGTGTTCTCTCCTGATGTGTTTTGATTCTAATGACTGATA
TACCAGGGCTTTTATTGTCACTCTTTCTTACACTCTGAACTCAAAATATT
ATCTGAAAGGGATCCCTGTagtattttcaagtattatTATATACTGTATT
TTATTATAACACTTGAATTTTACTTGAATTCTTTGTGAAGACtcaattta
tcattttatagTGTAAAGAAAGTTATTATTGATGGATTATCTTAACTTGG
TAGGGAGCTAACACAACATAGTTAGATGAAACGAGTTGTTTTTCGGGTTT
TAGGCATGGCTTATTTCTCAAGTCCATGCTAAAACTCTAGATTAAAATCA
TCTTATACTGATTGCAAGTTGTTCATAGAAGTCTTAGATTTTTGTAACAC
ATAGTTAGAAGGATTTCGGTTGCTTTAAAAACTGATACCCAGAACCGATT
TTACCCAGGTACCCTCTGGTTTACAAAGAGTTCTTGAGTTTATGGCAGTA
TTGAACAGCGcactattttcattttttgaacaacatagatattttttatt
tgtcttTTAATCAAAATCCTAGACTGCAAAAAAACACAACAGTGGACTTA
CATTCAAATTATAATAGGGAAAactaaagaaaagaaataattttatataa
ttttctCACTCTGTAGGTATCCAATTTCATTATCCCCAGATGGGATGAAG
TTTTAGGGTTTAGGTCAACTTTTCTATTGATAAAGTcatctttattttgt
ttttaattcaattttatcAACACTTTTGTGACCTATGTTGCAATCAAGTT
TGATAAACTTTGGATGGGCTTAGATTACTTTTGGCGATGAATTTCGAAAT
TGTCATCACTAACGTTAATTTTCTCTACAGAGCATAACGTTTACTGGCAA
CCTTAACAACCTAAATCTACTCAAGTTACTTTTCTCACTTCGAGATTTAC
CTTTTTGACCTTTACATAAAACTATGGTTCAAATGCCTTCCCATCAGAAA
AATGTCTTGCTCGGGGTAAATACTTGTATATTAGTGTTTCTTTCTGttgc
aaaatgaaaattatagtGGAGAAAGCAATTGGTAGGTCTTACTTTTTGAT
GAGAAGTTCCAATTTAGAATTGTTtgattttgtatatattttcctgaaag
aaattaattgttctttttttcttcagccTTGACAAGTTTTGTTAATTTAT
ATGGGTCTTCTTTCAGAAAAGGATTTCGAAATCTCGAACTCTACTCATCT
TAAGATCTAGCCACgttgaaagttttctttttgtcaAAATTGTTCTCGAA
TACTCTCACGTCAAAATAAAGTTTTCCAGTTGGCGATTTCCTGGGACAAT
ACTACCAAATTCTACAAAAAATCGGAATTGGAAATCTACCAGAATCTACT
ATTTTAGTTTTCTCAGATTTTACAAGCACTTTCGTTATAAGGAACTTTTA
GAATTGACTTTCTAAGGGCCTCTTGCTCCACCTTCTTGCTCCCTTCAGTG
CTCCGTAGAAATTTTTCCATAACTTCACCAGCTTTGAAGAAAAACAGTTA
TGAATTCCAAAGGAATCGTATAGTGAGAGAATAAAATTAAAACGTATATA
CTACTTGGTCGGGTCCTCTCTTGAACTTGTGAAAATTCGAAATTCTGTTT
TGCTGTTATTCAGACATCTAATTGTAGTGGGCATTTGGTATTTTGTTTAA
TGAAAGTGAGTTTCTCTGAACGgaaggatttttttttggaactaTTCGTT
TGGCTGGTCTATGTTAGTCTAAAGGAAAAAAAAGCTCGAGCTAAATTTCG
TATTTTATCATAAAATTTATGCAGCTGACCTCAATACTGTTATATATCTT
TATATATCTATTGtagaaaaaaaagttctttCGAACTTAAGTATGACAGT
TTAATTTCAATATACAGTGTTGCTCCTTTCCAAATCAGTGGAATGGGTAC
GtcaactgtttttctttgagtCAACATACAACATATTCAACATTATACAC
TGTAACACTGATGTCTTTTTTCTCTCTCATTTTCAGATTTGCTTCAAAAA
TACAAGGGGGCGATCATCTTCCTGTTTGTCATCCTATTTATAACAATCTT
GCTGGTCACACTATACCTTATGTTAAAGAAAGGcttctgttgttgttgtt
gcaacAAAGAGAAAGAGGACGAAGAGAGTCTTTACACTGACCTCGAGCAT
GATGAAGAAGACGATGAGATGGAGGGTCATATCCCTCCTCCAAAAGGTGA
ACTTCTCCACAGCGGTGAACATCACTTAGAACCCGAAGAACGTGCCGTAG
AGGAGCAGGAACATCACATTCCGGAGATCATCGTCACCGAAGGTCATTTC
GTCCCTGAGAAGAAGAGCAAGAAAAAACAACTGTCCGGTATGTTGAAACG
AATGCGACCGGGCAAAGGAAAAGTCCGATTTAGCCCGTCTAGTGAACAGA
TCAGCATGATAAGTTCAGAAGGTAGCACCATTACCAGCGATTACGGATCG
ACCACGAATTCCTTACCTATTCACAGATCAGATTCTATGGAGAGTTTCAT
GTCGGCTGTTTCGGCCGCTACAACGAACAATATCGATGAGTTTGGAGATG
AACTTTCTCCGAGTCGTTTGCAAGTTTTTTTACATTATGATCCGAAATTA
TGGACTTTGACAGTAGGTGTCAAGCAAGCTGATTGCTTAGTATCGACCAC
AGGTAGTGCCATGTATTGGCAAGCACATGTAACAATATTACCCTTTAAAA
AACATAGATTCAAAACGAAGTATAAGTCGACATCGACACCAATTTTTAAT
CAGAACTATGAAGTAGAAAACATCGCGCAACAAGCCCTCTCACAGCTTTC
CGTTCGTTATCGGATCTACGGCCGTCCAGGGCGAGGTGGGCGTAAAAAGC
TGGCGGGAGAAACAGAAGTTGAACTTTCACATATAACCCAGATGGAGGAT
ATGATAATAAAGGACTGGCGTGTTTTGAGGCGTAAAGGTGGACCTTTCAT
CCGCCATGAAAGTGAAGTTTAGATGTTTAttttaaattcttatttttggg
AGGGCTATAGTggtatatattttattttctagttttatttttctcgtgtt
gttttttattaatgacattttttgAAGGCTTAGTGTAAAGGGCTCTGTCC
AGAGAGGAACCAGCTTCTAATTTGCAACGAAAAATTTTTCTATTCAGATA
TATTAATGATTACTCAAACTGACTCGGTGAACtctgaagaaaaattaaaa
ggagCTGCATAAAGATGAATCTccctcttttttataaaaattactcATTT
TTAATGGGTTATTCACTGTTATGTTCtattgtattttaatttttttacat
tttaatttaCAACTTGGGGTATTTTAAGTGAAAAGTACATGGCAAATATG
GAGAGATCACTTTACTTAGTCAGAGCCCGGAGAACTGGCATAATTTTATA
GTAAAGACAGAGACTTAAGGGGAAGCACAATTTTgacgttttgatttttg
aattcagACTTTATCTTTTGTTCTCTGATCAGAGACTAGAACAATTATAT
CATTCTATCAAAGTTTCCAAACCTGAAGCTTTTACCTGTCGATGTAGAAT
AATTGGTAGTAGTATTCTTGTTAGATTTTTTAGTAGCTAAATTAagggag
atattttcgtgtttttctaaccaacattttctttttttaattcattttta
taTGTCATCATCCATACTTGTAAAAATAAACCATTAATAGTCTACTACGA
TAATTACACACTACATATGCAGCAATCgtaattcaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00009598-exon-sc0000097-1491911889:528735..529157 | TCONS_00009598-exon-sc0000097-1491911889:528735..529157 | Clytia hemisphaerica | exon |
TCONS_00009598-exon-sc0000097-1510915933:528735..529157 | TCONS_00009598-exon-sc0000097-1510915933:528735..529157 | Clytia hemisphaerica | exon |
TCONS_00009598-exon-sc0000097-1575043694:528735..529157 | TCONS_00009598-exon-sc0000097-1575043694:528735..529157 | Clytia hemisphaerica | exon |
TCONS_00009598-exon-sc0000097-1491911889:535571..537323 | TCONS_00009598-exon-sc0000097-1491911889:535571..537323 | Clytia hemisphaerica | exon |
TCONS_00009598-exon-sc0000097-1510915933:535571..537323 | TCONS_00009598-exon-sc0000097-1510915933:535571..537323 | Clytia hemisphaerica | exon |
TCONS_00009598-exon-sc0000097-1575043694:535571..537323 | TCONS_00009598-exon-sc0000097-1575043694:535571..537323 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000097 | supercontig | sc0000097:528735..537323 + |
Blast
The following BLAST results are available for this feature:
|