|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009587 ID=TCONS_00009587|Name=TCONS_00009587|organism=Clytia hemisphaerica|type=transcript|length=2247bp
aacttttccgtctgtagacggatatccgtccagttgagatacaaatatat
catttccgtcttgccagtaagagggtttttggttcaaatgacCATCTAAT
CCTAAGGTTTCCGTCCATATTCATAAAACCTAGTTGCAACACTGaattat
gtgttaaatgcataaccaggtagttccataaaagtatcacttttgAAGTT
CTTTCTTGATGTTTTAGGCACTCTTCTCTATTGCATCCCCGATTGGAGCT
ATCATTGGCATTATCATTTTCAGCGTTAAATCAAGCTTTGTAAGTGACGA
AGTGGTTGTTGTGCTCACAGGGCTCTCCACTGGAACTTTCATTTATGTGA
CCTTCTTTGAAATCCTTGGTAAATGTTTAGAAGGAGATAAGATGGAAGAC
ATgattggatttgtttattttgtgcTTGGTTTTGGTCTTTTTGCTGGCAT
TACTGCAGTACCACAAATGCAAGTTTAATGTGAAGTTGATAAATTACTGC
AGAAAATATTTCCAAACGATTCTCTGTAgcttgggatgagctggagtttt
tataagatacttcactaattggtcatggTCATTAGAAGTAAtggagatga
cgcgttctttagaaaaacgACCAACCAAATTACATAAGAGCTTGTAGAAA
CTTTAGCTTGTCCCTGTTACTTTAATTAATTCAAATGACTATGAACAATG
AATCTTATCActaaaaaattaacatttttcaatgaggcatatttttgaaa
gaataatAGCAAAAACATTCTTTACATACACTTTGTTGGGTAATTGAGTC
TTCTTTTCTAATCTGTCTTAACCAAAAACACGATAAAATCTGGTCAAAAC
TACCAGAACACAGTTGAACAGTATTTACACCACTTCATCTAAGGCttgat
atatttttattatgtcatgttattttctgatttttacgTATTAAGAATCA
TATTGGTACACTGGACTTATTATTAATGCACATTTCGCATACTTTCTATA
AGAATACTTTTCATAAATAATATTAGAATTTAGNATGCACATTTCGCATC
CTTTCTTATCTATAACAATACTTTCATAAGTaatattagaatttttttta
actgaaatgCTTGGGGTATATTTGAttcatcagattgttttttttaatat
ttcacagatttatattgttttgaataaattatgatttttttaatattttg
ggccaataattttattgttttgagcAATTTTAGAAACATTATTAGTATAA
TAGAAAAAAGGACAAGCAGCTTTAAAATGAGTACTTGATTACAAATTTTA
TAAGTTTTTAAAATCATTTCTGCAAAAAGTACAAGTATTTTACTTTGAGA
TGTactataccttattggaactaattttcatggGAACTAATATTCGTGGT
CGAAaagaaaaatcggaaaaaatgcgAAGAACTGGGATTTAATTTtagcg
gttttgcccttttttggacaaatttctttcattttcctagggatttttca
aatttttcgataaaattgcgGGTTCAAATTTTCCCATAGCATGGGCCTAT
TTTTACTTCATTTCTCTTGAATCATAGACTTACTTGGGAGGAGAACGAAA
TGTGGAGAGGAAAACATAATGTTTCGTTTTCTTTCTACCCTGTAATGCCC
ACTGTTTTATTGTTACtgaattgttttttcattcCTTTGTCGAATGTGAA
TAAATATTAAATTTTGTCATTTAGcacattttgtttttcaaaatttatat
agATTTAATAACTTTTGTCCTTTAATAATATTTTAGATAATATATTAATT
GTAGTCTGAATATGGGAGATAAAATTATTAGTTAAGTCATTTTTGTTATA
GTAACCTGAAAACTGAATATTATAAGTGGCCAAATTTTTGCTTggacatt
ttcacaaaattaaaaatctaaaatttttgcatGGAAAAACTTTGCGAATA
TGAGTTACAAATGTACACCCAACAGCTttttagaagtgacgtaaaacttg
aatttaTCCAATAGAATGGCTTAATTTTGTTTCAGTGAAACGGAACCGTA
TCGTGTGAACGTGGTCTAAATGCATTAAAATATAAATgtgtctttgtttt
tcaatctcATAACATGAtgcattgattttatttttttgcaaacaattttt
ttagCGTTCATTTAGTTAAATGAAATATATAGCAGCCAGCCATTTTGTTA
AATTAAAATATGCCTTTTTTGTaggtattttttcatttatctgaATG Run BLAST on NCBI transcript from alignment at sc0000097:400891..403137+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009587 ID=TCONS_00009587|Name=TCONS_00009587|organism=Clytia hemisphaerica|type=transcript|length=2247bp|location=Sequence derived from alignment at sc0000097:400891..403137+ (Clytia hemisphaerica)
aacttttccgtctgtagacggatatccgtccagttgagatacaaatatat
catttccgtcttgccagtaagagggtttttggttcaaatgacCATCTAAT
CCTAAGGTTTCCGTCCATATTCATAAAACCTAGTTGCAACACTGaattat
gtgttaaatgcataaccaggtagttccataaaagtatcacttttgAAGTT
CTTTCTTGATGTTTTAGGCACTCTTCTCTATTGCATCCCCGATTGGAGCT
ATCATTGGCATTATCATTTTCAGCGTTAAATCAAGCTTTGTAAGTGACGA
AGTGGTTGTTGTGCTCACAGGGCTCTCCACTGGAACTTTCATTTATGTGA
CCTTCTTTGAAATCCTTGGTAAATGTTTAGAAGGAGATAAGATGGAAGAC
ATgattggatttgtttattttgtgcTTGGTTTTGGTCTTTTTGCTGGCAT
TACTGCAGTACCACAAATGCAAGTTTAATGTGAAGTTGATAAATTACTGC
AGAAAATATTTCCAAACGATTCTCTGTAgcttgggatgagctggagtttt
tataagatacttcactaattggtcatggTCATTAGAAGTAAtggagatga
cgcgttctttagaaaaacgACCAACCAAATTACATAAGAGCTTGTAGAAA
CTTTAGCTTGTCCCTGTTACTTTAATTAATTCAAATGACTATGAACAATG
AATCTTATCActaaaaaattaacatttttcaatgaggcatatttttgaaa
gaataatAGCAAAAACATTCTTTACATACACTTTGTTGGGTAATTGAGTC
TTCTTTTCTAATCTGTCTTAACCAAAAACACGATAAAATCTGGTCAAAAC
TACCAGAACACAGTTGAACAGTATTTACACCACTTCATCTAAGGCttgat
atatttttattatgtcatgttattttctgatttttacgTATTAAGAATCA
TATTGGTACACTGGACTTATTATTAATGCACATTTCGCATACTTTCTATA
AGAATACTTTTCATAAATAATATTAGAATTTAGNATGCACATTTCGCATC
CTTTCTTATCTATAACAATACTTTCATAAGTaatattagaatttttttta
actgaaatgCTTGGGGTATATTTGAttcatcagattgttttttttaatat
ttcacagatttatattgttttgaataaattatgatttttttaatattttg
ggccaataattttattgttttgagcAATTTTAGAAACATTATTAGTATAA
TAGAAAAAAGGACAAGCAGCTTTAAAATGAGTACTTGATTACAAATTTTA
TAAGTTTTTAAAATCATTTCTGCAAAAAGTACAAGTATTTTACTTTGAGA
TGTactataccttattggaactaattttcatggGAACTAATATTCGTGGT
CGAAaagaaaaatcggaaaaaatgcgAAGAACTGGGATTTAATTTtagcg
gttttgcccttttttggacaaatttctttcattttcctagggatttttca
aatttttcgataaaattgcgGGTTCAAATTTTCCCATAGCATGGGCCTAT
TTTTACTTCATTTCTCTTGAATCATAGACTTACTTGGGAGGAGAACGAAA
TGTGGAGAGGAAAACATAATGTTTCGTTTTCTTTCTACCCTGTAATGCCC
ACTGTTTTATTGTTACtgaattgttttttcattcCTTTGTCGAATGTGAA
TAAATATTAAATTTTGTCATTTAGcacattttgtttttcaaaatttatat
agATTTAATAACTTTTGTCCTTTAATAATATTTTAGATAATATATTAATT
GTAGTCTGAATATGGGAGATAAAATTATTAGTTAAGTCATTTTTGTTATA
GTAACCTGAAAACTGAATATTATAAGTGGCCAAATTTTTGCTTggacatt
ttcacaaaattaaaaatctaaaatttttgcatGGAAAAACTTTGCGAATA
TGAGTTACAAATGTACACCCAACAGCTttttagaagtgacgtaaaacttg
aatttaTCCAATAGAATGGCTTAATTTTGTTTCAGTGAAACGGAACCGTA
TCGTGTGAACGTGGTCTAAATGCATTAAAATATAAATgtgtctttgtttt
tcaatctcATAACATGAtgcattgattttatttttttgcaaacaattttt
ttagCGTTCATTTAGTTAAATGAAATATATAGCAGCCAGCCATTTTGTTA
AATTAAAATATGCCTTTTTTGTaggtattttttcatttatctgaATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009587-exon-sc0000097-1491911889:400891..403137 | TCONS_00009587-exon-sc0000097-1491911889:400891..403137 | Clytia hemisphaerica | exon |
| TCONS_00009587-exon-sc0000097-1510915933:400891..403137 | TCONS_00009587-exon-sc0000097-1510915933:400891..403137 | Clytia hemisphaerica | exon |
| TCONS_00009587-exon-sc0000097-1575043694:400891..403137 | TCONS_00009587-exon-sc0000097-1575043694:400891..403137 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000097 | supercontig | sc0000097:400891..403137 + |
Blast
The following BLAST results are available for this feature:
|
