TCONS_00009571 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009571
Unique NameTCONS_00009571
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length188

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009571 ID=TCONS_00009571|Name=TCONS_00009571|organism=Clytia hemisphaerica|type=transcript|length=188bp
AGTGGTTATGTGGATGACTGTTACAACTCCACATTAGCTGTTTATCAATT
GGAAAATGCAAAGACTTTTTGTAACAATGAAACACAATGTAAATTAAAAG
CAGgattcaatTTTGCGGATAAATGCAACAACCTAATGTGGTATGATCCG
TGCGATGGAAGATCAAAGTATCTGGATCTGAACTACAC
Run BLAST on NCBI

transcript from alignment at sc0000097:205958..206605+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009571 ID=TCONS_00009571|Name=TCONS_00009571|organism=Clytia hemisphaerica|type=transcript|length=648bp|location=Sequence derived from alignment at sc0000097:205958..206605+ (Clytia hemisphaerica)
AGTGGTTATGTGGATGACTGTTACAACTCCACATTAGCTGTTTATCAATT
GGAAAATGCAAAGACTTTTTGTAACAATGAAACACAATGTAAATTAAAAG
CAGGTAAGTTATATCTAAGAATTGCATATAGCTTCTCAAGGTTGTGCTGT
AAAAGTCGAATATTCTTCAAGAGTGCTCTACCTACTCTACCTTGGGCAAA
GGTAATCTAACAGATTACAACGCCCTCCGAACAACATCACAACTGCTGCT
CTACCTACGGATCATGCAGAAATAGAAACACTCTTAGCATGACATAGACG
ATGTTACCATCCGTTATAATGacagtaaaggcgggaaaatatggcggtat
cgcgttatggcggtatacagAAAAAAAAGTCGGCGGGAGACTAGCAAACT
CATCGATTGTAAACTGTTTTCGGCAAAAAGCCCGTTTGCGacttttcttc
ggctttggccttatttcttagatagtgatttgtcttagactatagcatag
tctgtGCATGACAGTATAAACTAAGGAGTTTTTACTGGtgaatatttttg
gatatttttttaggattcaatTTTGCGGATAAATGCAACAACCTAATGTG
GTATGATCCGTGCGATGGAAGATCAAAGTATCTGGATCTGAACTACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005351XLOC_005351Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009571-exon-sc0000097-1491911889:205958..206060TCONS_00009571-exon-sc0000097-1491911889:205958..206060Clytia hemisphaericaexon
TCONS_00009571-exon-sc0000097-1510915933:205958..206060TCONS_00009571-exon-sc0000097-1510915933:205958..206060Clytia hemisphaericaexon
TCONS_00009571-exon-sc0000097-1575043694:205958..206060TCONS_00009571-exon-sc0000097-1575043694:205958..206060Clytia hemisphaericaexon
TCONS_00009571-exon-sc0000097-1491911889:206521..206605TCONS_00009571-exon-sc0000097-1491911889:206521..206605Clytia hemisphaericaexon
TCONS_00009571-exon-sc0000097-1510915933:206521..206605TCONS_00009571-exon-sc0000097-1510915933:206521..206605Clytia hemisphaericaexon
TCONS_00009571-exon-sc0000097-1575043694:206521..206605TCONS_00009571-exon-sc0000097-1575043694:206521..206605Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097supercontigsc0000097:205958..206605 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	1.65181	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009571 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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