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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009569 ID=TCONS_00009569|Name=TCONS_00009569|organism=Clytia hemisphaerica|type=transcript|length=3457bpRun BLAST on NCBI protein sequence of TCONS_00009569-protein >TCONS_00009569-protein ID=TCONS_00009569-protein|Name=TCONS_00009569-protein|organism=Clytia hemisphaerica|type=polypeptide|length=586bp MQSCILFAFLVGVVCGAPPKFPIGSEPGLWEGDIKLNEKQKKDVDRILEKRun BLAST on NCBI transcript from alignment at sc0000097:179584..188306+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009569 ID=TCONS_00009569|Name=TCONS_00009569|organism=Clytia hemisphaerica|type=transcript|length=8723bp|location=Sequence derived from alignment at sc0000097:179584..188306+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000097:179584..188306+ >TCONS_00009569 ID=TCONS_00009569|Name=TCONS_00009569|organism=Clytia hemisphaerica|type=CDS|length=17610bp|location=Sequence derived from alignment at sc0000097:179584..188306+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009569 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3) HSP 1 Score: 123.25 bits (308), Expect = 1.466e-28 Identity = 82/229 (35.81%), Postives = 112/229 (48.91%), Query Frame = 3
Query: 585 LWEGDIKLNEKQKKDVDRILEKKGTSTFGLTNVYPPWTNGVVVYEFAPSIANNPAKNRGIYAAMREWTTKTSNCITFRKRRPNEKNYLQFFVGNGCWGHLGMPN-GRSQISVGAGCEGQNVMAHEIGHALGFWHEQSRTDRDSYLRILWENVPNAFREAFEKYGRDQIDSLGVPYDYTSIMHYPWNAFSTTGRDTV--RPLRKVPSPGPYVHVSALDVKQARLFYKCDA 1262
L+EGDI+L+ Q ++ S G +P + Y S+ N AK I A + KT CI F K E NY+ F G+GCW +G G+ ++S+GA C+ + HE HALGFWHEQSR+DRD Y+RI+W+ + + F Y D DSL VPYDYTS+MHY AF T+ R G + S D+ + Y C +
Sbjct: 48 LFEGDIRLDRAQIRN----------SIIGEKYRWPH----TIPYVLEDSLEMN-AKGV-ILNAFERYRLKT--CIDF-KPWAGETNYISVFKGSGCWSSVGNRRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDFEDVIGQRMDFSDSDLLKLNQLYNCSS 257 The following BLAST results are available for this feature:
BLAST of TCONS_00009569 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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