TCONS_00009562 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009562
Unique NameTCONS_00009562
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length761

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009562 ID=TCONS_00009562|Name=TCONS_00009562|organism=Clytia hemisphaerica|type=transcript|length=761bp
gtaaaattcagaaacaatAAAGCAGAGCTAATTTATGTTAAACTAGACGA
TGAAACGGCTGGAATAAAAGCTCAAAGTAAAGACCAATATGCTAAGGCCA
CTGAAACTGTTCCCATTGAAAAGAGTGAGGTAAATTTTCCCTTTGACAAA
AAAANACTTCACCTATTATTTCTCGGACACAATTTCCTCTTAAGCTAGCT
TATGCTTGTACAGTGCACAAAGTTCAAGGATTGACTTTGGATTCTGTAGT
CGTTANTAAGGCAAAGAAAGTTCAATGCTGGTCAAATGTATGTTGCAATG
AGCAgagtgaaaaatttaaatagTTTGTACTTTACTGGTCAATATCGACG
TAGTGCTTTTGTCTGTAGTGATAAAGTTAGTGAAGAATACACACGATTGC
GTCAGAACAAAGTTGAAAGAGTTGCAGATATTATGAGGTGCAGTTCTAAT
TTAAATGTTTGCCTATTGAATGTAAGATCTTTAAAACGTCATGCAGTTGA
TGTTCAAAgggacagatttttgtatgaaaatgatttgttatGCCTGACAG
AGACACAGATTAGTTATGAGCATTCTGAGGAAGACAAACAAAGTATTCAT
GAACAGCTTCCTTATTATATTCTTAGTCATAATATTGACCAGCATAAATT
CAACAGTATTACTGTCTGTCATTCTCCTTCTTTTATTGACATTGATGAGT
ATGATCATTCATCATGCTTTTCTcttgtaaaatttagaaaagctgAATTT
ACTGAAAAGGA
Run BLAST on NCBI

protein sequence of TCONS_00009562-protein

>TCONS_00009562-protein ID=TCONS_00009562-protein|Name=TCONS_00009562-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MYVAMSRVKNLNSLYFTGQYRRSAFVCSDKVSEEYTRLRQNKVERVADIM
RCSSNLNVCLLNVRSLKRHAVDVQRDRFLYENDLLCLTETQISYEHSEED
KQSIHEQLPYYILSHNIDQHKFNSITVCHSPSFIDIDEYDHSSCFSLVKF
RKAEFTEK
Run BLAST on NCBI

transcript from alignment at sc0000095:569809..570569

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009562 ID=TCONS_00009562|Name=TCONS_00009562|organism=Clytia hemisphaerica|type=transcript|length=761bp|location=Sequence derived from alignment at sc0000095:569809..570569 (Clytia hemisphaerica)
TCCTTTTCAGTAAATTcagcttttctaaattttacaagAGAAAAGCATGA
TGAATGATCATACTCATCAATGTCAATAAAAGAAGGAGAATGACAGACAG
TAATACTGTTGAATTTATGCTGGTCAATATTATGACTAAGAATATAATAA
GGAAGCTGTTCATGAATACTTTGTTTGTCTTCCTCAGAATGCTCATAACT
AATCTGTGTCTCTGTCAGGCataacaaatcattttcatacaaaaatctgt
cccTTTGAACATCAACTGCATGACGTTTTAAAGATCTTACATTCAATAGG
CAAACATTTAAATTAGAACTGCACCTCATAATATCTGCAACTCTTTCAAC
TTTGTTCTGACGCAATCGTGTGTATTCTTCACTAACTTTATCACTACAGA
CAAAAGCACTACGTCGATATTGACCAGTAAAGTACAAActatttaaattt
ttcactcTGCTCATTGCAACATACATTTGACCAGCATTGAACTTTCTTTG
CCTTANTAACGACTACAGAATCCAAAGTCAATCCTTGAACTTTGTGCACT
GTACAAGCATAAGCTAGCTTAAGAGGAAATTGTGTCCGAGAAATAATAGG
TGAAGTNTTTTTTTGTCAAAGGGAAAATTTACCTCACTCTTTTCAATGGG
AACAGTTTCAGTGGCCTTAGCATATTGGTCTTTACTTTGAGCTTTTATTC
CAGCCGTTTCATCGTCTAGTTTAACATAAATTAGCTCTGCTTTattgttt
ctgaattttac

Coding sequence (CDS) from alignment at sc0000095:569809..570569

>TCONS_00009562 ID=TCONS_00009562|Name=TCONS_00009562|organism=Clytia hemisphaerica|type=CDS|length=474bp|location=Sequence derived from alignment at sc0000095:569809..570569 (Clytia hemisphaerica)
CTTTTCAGTAAATTcagcttttctaaattttacaagAGAAAAGCATGATG
AATGATCATACTCATCAATGTCAATAAAAGAAGGAGAATGACAGACAGTA
ATACTGTTGAATTTATGCTGGTCAATATTATGACTAAGAATATAATAAGG
AAGCTGTTCATGAATACTTTGTTTGTCTTCCTCAGAATGCTCATAACTAA
TCTGTGTCTCTGTCAGGCataacaaatcattttcatacaaaaatctgtcc
cTTTGAACATCAACTGCATGACGTTTTAAAGATCTTACATTCAATAGGCA
AACATTTAAATTAGAACTGCACCTCATAATATCTGCAACTCTTTCAACTT
TGTTCTGACGCAATCGTGTGTATTCTTCACTAACTTTATCACTACAGACA
AAAGCACTACGTCGATATTGACCAGTAAAGTACAAActatttaaattttt
cactcTGCTCATTGCAACATACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005344XLOC_005344Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009562-proteinTCONS_00009562-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009562-exon-sc0000095-1491911889:569809..570569TCONS_00009562-exon-sc0000095-1491911889:569809..570569Clytia hemisphaericaexon
TCONS_00009562-exon-sc0000095-1510915933:569809..570569TCONS_00009562-exon-sc0000095-1510915933:569809..570569Clytia hemisphaericaexon
TCONS_00009562-exon-sc0000095-1575043694:569809..570569TCONS_00009562-exon-sc0000095-1575043694:569809..570569Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095supercontigsc0000095:569809..570569 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.42371	6.02491	5.16836	5.22148	0.967231	1.41398	2.74293	1.46754	2.77731	2.08445	0.911874	2.45325	1.76014	1.69495	2.27325	3.2908	2.2699	2.54169	1.78799	2.38544	1.86403	3.85762	1.73898	2.75668	0.349357	1.29141	5.31903	3.99682	3.74465	4.88213
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009562 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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