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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009551 ID=TCONS_00009551|Name=TCONS_00009551|organism=Clytia hemisphaerica|type=transcript|length=2314bp
TACGTCTTTTCCTTTAAGAACTACCAGCAGTAACACTGTCAAGCACTATT
CTTCTCTCTTTTCAATTCATTTCAAGATATCTTTAATAGTGAGGTAAAAT
GTGTATCGTTTTTGAGTTCTtattatacagtggagtcttcaTAACTGGAC
TTAACTGCAAAGAGACCTcagaactttttcgagttaaggcgacatttgag
ttaaagagactcttcTGTATTCCAAAGCGAGTCCTGCAACGATTTTACGG
AGTGTTTTGTTGACGATGTTATAAAATTACGTCCCCGAAAATAACGTGTT
TATGgtaaaggcgcttgaaaattaagcatctgagaaaaataattaaattt
gtCAGATCGTTTGTTTCGTTTCACACATcactttagagcttcagcgtagc
GTGCAGAAAATCATGACGATCTGTTCTCAGGTTACAGTATGGTTGAACTA
TTAACATACATACATTCTAAAGACTATTCTTTTCCAGTTTTAGAAGCAAT
AACATATCTCACTGTATGCAACCTTTTGTTCCTGCTCGGGATACCTATCA
TCTACATGGCGATGAAGAACTACCTACAACAACTTTTATGTTGTAGCTCC
CATCAAAGTGACTACGAAAATATTAATGGAGATTCATTCAGCTCAGATCT
GTCTGATTCGTTCGATACCTTTGATGACATTTTCAACCCACCGCCTGAAA
CGCCACCTAAAGAGCCatccactttcactttcgaaaGTAAAGGATATTAT
TACAGTAGACAAGCACAACTTGGTTCGAAGTTTGTTCTTTTGGGTATGAT
GCCTGATGATGAGGCTACAAAAGGCAAAATCACAACAGATGTATCTTATT
CTTTTCTACAAGAGAAAAAACCAGGCATCCAAATTAACATCAGTAACTTA
ACATTCTTAGATCAACACGATCACACAACAACAGATAAAAGCATGtacaa
atttaaaatcaaaatcgtCAACCATGATTCAATTAACCCTGATGAACCAC
TCAATACAGTTTGCCATCTAGAAAGTGATTTTATTCCCTACAATGATATC
CAAAAACACATCTTCAAAATCTATAGTTACGATGCTACAGAAATATTCGA
AAATTTAGAACTGAAATTGAGAGTTTATTATAAAAGAACATTGAATAGTG
AACGGTTTTATCTCGGTGACGGTAAATTGAAACTGGTTCACAAAGATGTT
AATGGAAATGTGGTGAAAGAGAAAATGACTCTGCGTAAAGACTGGAAACG
ACAGATATCTGCTTAAATTTAATTGAACAGACTTTTACCAAACTCGTATC
CAGTCTCTTGGCAGTCCAATAGCTCGCTTTTTGATAACTTTGATAGCGCT
CACAAAattgtatcacgtccatcagtaacaTGAAAGAAGTGGTgtaagtg
gctctgggtacgcGATTGATGAACTTTTACTTAAAGATGCAAGAAACAAA
AGTACCCTTCCATCCTGGCAAAAGAATGTTGATGAAACGGTCTAAACGTT
GTATGTAAGATACGTTTTGAGGATCCGTCTCACTGAAACATAATAATTCG
ATGGTGGTGTCGAcgaaaattttaaactcttgAGAAGGTTAgtcatgaaa
tattttttgaagaaaatactTATTTCGAGACAGAATTTATAATCTtatca
aaattgtaaatatcataacattataaaaacattttaaggcaaaCTATTAT
ATACAAGTTTTAATgcttaaaatttgataaatagaTTCAAAAAGTCCTGA
AAGGTTTATTTCCCAtaattatccatatagcggtcattaagaaAGCCGTT
AAAGGTTCaatcggcgggcggtattgaaaggttttgtgactcaaattgtc
atacccACGCTGAGGAAACTAAACCGCcaggcttcagagggctgaaatat
cattaaccgcccgggtatagggcaataacgtcatttgcTTGAAGTCGTTA
CATTGAAGCGAAGAGACTAAAATAACGTcagaaaaaacacttttttggtc
atttgcgacCCGCTCGAAGGtgctaaaaatttgttgaagagATTGCATTG
AAACGGAAAGCCTTggttgacgctagaaaaaaacgttgtttgaatgtccg
atatgaataataatagtaatagcgttaagttttcattcgttgttgtcatt
aattctaCCCTTGCAGTTtgatcatagtataagaaagccgcggctggaat
gatgacgctattgttttttatcgtaaatggatgttctatctgtgtctccg
tggtttataagaactaagtcgaaggtaacaaaatccttaaccttaaaagt
gttcataatattca Run BLAST on NCBI protein sequence of TCONS_00009551-protein >TCONS_00009551-protein ID=TCONS_00009551-protein|Name=TCONS_00009551-protein|organism=Clytia hemisphaerica|type=polypeptide|length=275bp
MVELLTYIHSKDYSFPVLEAITYLTVCNLLFLLGIPIIYMAMKNYLQQLL
CCSSHQSDYENINGDSFSSDLSDSFDTFDDIFNPPPETPPKEPSTFTFES
KGYYYSRQAQLGSKFVLLGMMPDDEATKGKITTDVSYSFLQEKKPGIQIN
ISNLTFLDQHDHTTTDKSMYKFKIKIVNHDSINPDEPLNTVCHLESDFIP
YNDIQKHIFKIYSYDATEIFENLELKLRVYYKRTLNSERFYLGDGKLKLV
HKDVNGNVVKEKMTLRKDWKRQISA Run BLAST on NCBI transcript from alignment at sc0000095:180622..182935 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009551 ID=TCONS_00009551|Name=TCONS_00009551|organism=Clytia hemisphaerica|type=transcript|length=2314bp|location=Sequence derived from alignment at sc0000095:180622..182935 (Clytia hemisphaerica)
tgaatattatgaacacttttaaggttaaggattttgttaccttcgactta
gttcttataaaccacggagacacagatagaacatccatttacgataaaaa
acaatagcgtcatcattccagccgcggctttcttatactatgatcaAACT
GCAAGGGtagaattaatgacaacaacgaatgaaaacttaacgctattact
attattattcatatcggacattcaaacaacgtttttttctagcgtcaacc
AAGGCTTTCCGTTTCAATGCAATctcttcaacaaatttttagcaCCTTCG
AGCGGgtcgcaaatgaccaaaaaagtgttttttctgACGTTATTTTAGTC
TCTTCGCTTCAATGTAACGACTTCAAgcaaatgacgttattgccctatac
ccgggcggttaatgatatttcagccctctgaagcctgGCGGTTTAGTTTC
CTCAGCGTgggtatgacaatttgagtcacaaaacctttcaataccgcccg
ccgattGAACCTTTAACGGCTttcttaatgaccgctatatggataattaT
GGGAAATAAACCTTTCAGGACTTTTTGAAtctatttatcaaattttaagc
ATTAAAACTTGTATATAATAGtttgccttaaaatgtttttataatgttat
gatatttacaattttgataAGATTATAAATTCTGTCTCGAAATAagtatt
ttcttcaaaaaatatttcatgacTAACCTTCTcaagagtttaaaattttc
gTCGACACCACCATCGAATTATTATGTTTCAGTGAGACGGATCCTCAAAA
CGTATCTTACATACAACGTTTAGACCGTTTCATCAACATTCTTTTGCCAG
GATGGAAGGGTACTTTTGTTTCTTGCATCTTTAAGTAAAAGTTCATCAAT
CgcgtacccagagccacttacACCACTTCTTTCAtgttactgatggacgt
gatacaatTTTGTGAGCGCTATCAAAGTTATCAAAAAGCGAGCTATTGGA
CTGCCAAGAGACTGGATACGAGTTTGGTAAAAGTCTGTTCAATTAAATTT
AAGCAGATATCTGTCGTTTCCAGTCTTTACGCAGAGTCATTTTCTCTTTC
ACCACATTTCCATTAACATCTTTGTGAACCAGTTTCAATTTACCGTCACC
GAGATAAAACCGTTCACTATTCAATGTTCTTTTATAATAAACTCTCAATT
TCAGTTCTAAATTTTCGAATATTTCTGTAGCATCGTAACTATAGATTTTG
AAGATGTGTTTTTGGATATCATTGTAGGGAATAAAATCACTTTCTAGATG
GCAAACTGTATTGAGTGGTTCATCAGGGTTAATTGAATCATGGTTGacga
ttttgattttaaatttgtaCATGCTTTTATCTGTTGTTGTGTGATCGTGT
TGATCTAAGAATGTTAAGTTACTGATGTTAATTTGGATGCCTGGTTTTTT
CTCTTGTAGAAAAGAATAAGATACATCTGTTGTGATTTTGCCTTTTGTAG
CCTCATCATCAGGCATCATACCCAAAAGAACAAACTTCGAACCAAGTTGT
GCTTGTCTACTGTAATAATATCCTTTACtttcgaaagtgaaagtggatGG
CTCTTTAGGTGGCGTTTCAGGCGGTGGGTTGAAAATGTCATCAAAGGTAT
CGAACGAATCAGACAGATCTGAGCTGAATGAATCTCCATTAATATTTTCG
TAGTCACTTTGATGGGAGCTACAACATAAAAGTTGTTGTAGGTAGTTCTT
CATCGCCATGTAGATGATAGGTATCCCGAGCAGGAACAAAAGGTTGCATA
CAGTGAGATATGTTATTGCTTCTAAAACTGGAAAAGAATAGTCTTTAGAA
TGTATGTATGTTAATAGTTCAACCATACTGTAACCTGAGAACAGATCGTC
ATGATTTTCTGCACgctacgctgaagctctaaagtgATGTGTGAAACGAA
ACAAACGATCTGacaaatttaattatttttctcagatgcttaattttcaa
gcgcctttacCATAAACACGTTATTTTCGGGGACGTAATTTTATAACATC
GTCAACAAAACACTCCGTAAAATCGTTGCAGGACTCGCTTTGGAATACAg
aagagtctctttaactcaaatgtcgccttaactcgaaaaagttctgAGGT
CTCTTTGCAGTTAAGTCCAGTTAtgaagactccactgtataataAGAACT
CAAAAACGATACACATTTTACCTCACTATTAAAGATATCTTGAAATGAAT
TGAAAAGAGAGAAGAATAGTGCTTGACAGTGTTACTGCTGGTAGTTCTTA
AAGGAAAAGACGTA Coding sequence (CDS) from alignment at sc0000095:180622..182935 >TCONS_00009551 ID=TCONS_00009551|Name=TCONS_00009551|organism=Clytia hemisphaerica|type=CDS|length=828bp|location=Sequence derived from alignment at sc0000095:180622..182935 (Clytia hemisphaerica)
TTAAGCAGATATCTGTCGTTTCCAGTCTTTACGCAGAGTCATTTTCTCTT
TCACCACATTTCCATTAACATCTTTGTGAACCAGTTTCAATTTACCGTCA
CCGAGATAAAACCGTTCACTATTCAATGTTCTTTTATAATAAACTCTCAA
TTTCAGTTCTAAATTTTCGAATATTTCTGTAGCATCGTAACTATAGATTT
TGAAGATGTGTTTTTGGATATCATTGTAGGGAATAAAATCACTTTCTAGA
TGGCAAACTGTATTGAGTGGTTCATCAGGGTTAATTGAATCATGGTTGac
gattttgattttaaatttgtaCATGCTTTTATCTGTTGTTGTGTGATCGT
GTTGATCTAAGAATGTTAAGTTACTGATGTTAATTTGGATGCCTGGTTTT
TTCTCTTGTAGAAAAGAATAAGATACATCTGTTGTGATTTTGCCTTTTGT
AGCCTCATCATCAGGCATCATACCCAAAAGAACAAACTTCGAACCAAGTT
GTGCTTGTCTACTGTAATAATATCCTTTACtttcgaaagtgaaagtggat
GGCTCTTTAGGTGGCGTTTCAGGCGGTGGGTTGAAAATGTCATCAAAGGT
ATCGAACGAATCAGACAGATCTGAGCTGAATGAATCTCCATTAATATTTT
CGTAGTCACTTTGATGGGAGCTACAACATAAAAGTTGTTGTAGGTAGTTC
TTCATCGCCATGTAGATGATAGGTATCCCGAGCAGGAACAAAAGGTTGCA
TACAGTGAGATATGTTATTGCTTCTAAAACTGGAAAAGAATAGTCTTTAG
AATGTATGTATGTTAATAGTTCAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009551-exon-sc0000095-1491911889:180622..182935 | TCONS_00009551-exon-sc0000095-1491911889:180622..182935 | Clytia hemisphaerica | exon |
| TCONS_00009551-exon-sc0000095-1510915933:180622..182935 | TCONS_00009551-exon-sc0000095-1510915933:180622..182935 | Clytia hemisphaerica | exon |
| TCONS_00009551-exon-sc0000095-1575043694:180622..182935 | TCONS_00009551-exon-sc0000095-1575043694:180622..182935 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000095 | supercontig | sc0000095:180622..182935 . |
Blast
The following BLAST results are available for this feature:
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