TCONS_00009551 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009551
Unique NameTCONS_00009551
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2314

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009551 ID=TCONS_00009551|Name=TCONS_00009551|organism=Clytia hemisphaerica|type=transcript|length=2314bp
TACGTCTTTTCCTTTAAGAACTACCAGCAGTAACACTGTCAAGCACTATT
CTTCTCTCTTTTCAATTCATTTCAAGATATCTTTAATAGTGAGGTAAAAT
GTGTATCGTTTTTGAGTTCTtattatacagtggagtcttcaTAACTGGAC
TTAACTGCAAAGAGACCTcagaactttttcgagttaaggcgacatttgag
ttaaagagactcttcTGTATTCCAAAGCGAGTCCTGCAACGATTTTACGG
AGTGTTTTGTTGACGATGTTATAAAATTACGTCCCCGAAAATAACGTGTT
TATGgtaaaggcgcttgaaaattaagcatctgagaaaaataattaaattt
gtCAGATCGTTTGTTTCGTTTCACACATcactttagagcttcagcgtagc
GTGCAGAAAATCATGACGATCTGTTCTCAGGTTACAGTATGGTTGAACTA
TTAACATACATACATTCTAAAGACTATTCTTTTCCAGTTTTAGAAGCAAT
AACATATCTCACTGTATGCAACCTTTTGTTCCTGCTCGGGATACCTATCA
TCTACATGGCGATGAAGAACTACCTACAACAACTTTTATGTTGTAGCTCC
CATCAAAGTGACTACGAAAATATTAATGGAGATTCATTCAGCTCAGATCT
GTCTGATTCGTTCGATACCTTTGATGACATTTTCAACCCACCGCCTGAAA
CGCCACCTAAAGAGCCatccactttcactttcgaaaGTAAAGGATATTAT
TACAGTAGACAAGCACAACTTGGTTCGAAGTTTGTTCTTTTGGGTATGAT
GCCTGATGATGAGGCTACAAAAGGCAAAATCACAACAGATGTATCTTATT
CTTTTCTACAAGAGAAAAAACCAGGCATCCAAATTAACATCAGTAACTTA
ACATTCTTAGATCAACACGATCACACAACAACAGATAAAAGCATGtacaa
atttaaaatcaaaatcgtCAACCATGATTCAATTAACCCTGATGAACCAC
TCAATACAGTTTGCCATCTAGAAAGTGATTTTATTCCCTACAATGATATC
CAAAAACACATCTTCAAAATCTATAGTTACGATGCTACAGAAATATTCGA
AAATTTAGAACTGAAATTGAGAGTTTATTATAAAAGAACATTGAATAGTG
AACGGTTTTATCTCGGTGACGGTAAATTGAAACTGGTTCACAAAGATGTT
AATGGAAATGTGGTGAAAGAGAAAATGACTCTGCGTAAAGACTGGAAACG
ACAGATATCTGCTTAAATTTAATTGAACAGACTTTTACCAAACTCGTATC
CAGTCTCTTGGCAGTCCAATAGCTCGCTTTTTGATAACTTTGATAGCGCT
CACAAAattgtatcacgtccatcagtaacaTGAAAGAAGTGGTgtaagtg
gctctgggtacgcGATTGATGAACTTTTACTTAAAGATGCAAGAAACAAA
AGTACCCTTCCATCCTGGCAAAAGAATGTTGATGAAACGGTCTAAACGTT
GTATGTAAGATACGTTTTGAGGATCCGTCTCACTGAAACATAATAATTCG
ATGGTGGTGTCGAcgaaaattttaaactcttgAGAAGGTTAgtcatgaaa
tattttttgaagaaaatactTATTTCGAGACAGAATTTATAATCTtatca
aaattgtaaatatcataacattataaaaacattttaaggcaaaCTATTAT
ATACAAGTTTTAATgcttaaaatttgataaatagaTTCAAAAAGTCCTGA
AAGGTTTATTTCCCAtaattatccatatagcggtcattaagaaAGCCGTT
AAAGGTTCaatcggcgggcggtattgaaaggttttgtgactcaaattgtc
atacccACGCTGAGGAAACTAAACCGCcaggcttcagagggctgaaatat
cattaaccgcccgggtatagggcaataacgtcatttgcTTGAAGTCGTTA
CATTGAAGCGAAGAGACTAAAATAACGTcagaaaaaacacttttttggtc
atttgcgacCCGCTCGAAGGtgctaaaaatttgttgaagagATTGCATTG
AAACGGAAAGCCTTggttgacgctagaaaaaaacgttgtttgaatgtccg
atatgaataataatagtaatagcgttaagttttcattcgttgttgtcatt
aattctaCCCTTGCAGTTtgatcatagtataagaaagccgcggctggaat
gatgacgctattgttttttatcgtaaatggatgttctatctgtgtctccg
tggtttataagaactaagtcgaaggtaacaaaatccttaaccttaaaagt
gttcataatattca
Run BLAST on NCBI

protein sequence of TCONS_00009551-protein

>TCONS_00009551-protein ID=TCONS_00009551-protein|Name=TCONS_00009551-protein|organism=Clytia hemisphaerica|type=polypeptide|length=275bp
MVELLTYIHSKDYSFPVLEAITYLTVCNLLFLLGIPIIYMAMKNYLQQLL
CCSSHQSDYENINGDSFSSDLSDSFDTFDDIFNPPPETPPKEPSTFTFES
KGYYYSRQAQLGSKFVLLGMMPDDEATKGKITTDVSYSFLQEKKPGIQIN
ISNLTFLDQHDHTTTDKSMYKFKIKIVNHDSINPDEPLNTVCHLESDFIP
YNDIQKHIFKIYSYDATEIFENLELKLRVYYKRTLNSERFYLGDGKLKLV
HKDVNGNVVKEKMTLRKDWKRQISA
Run BLAST on NCBI

transcript from alignment at sc0000095:180622..182935

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009551 ID=TCONS_00009551|Name=TCONS_00009551|organism=Clytia hemisphaerica|type=transcript|length=2314bp|location=Sequence derived from alignment at sc0000095:180622..182935 (Clytia hemisphaerica)
tgaatattatgaacacttttaaggttaaggattttgttaccttcgactta gttcttataaaccacggagacacagatagaacatccatttacgataaaaa acaatagcgtcatcattccagccgcggctttcttatactatgatcaAACT GCAAGGGtagaattaatgacaacaacgaatgaaaacttaacgctattact attattattcatatcggacattcaaacaacgtttttttctagcgtcaacc AAGGCTTTCCGTTTCAATGCAATctcttcaacaaatttttagcaCCTTCG AGCGGgtcgcaaatgaccaaaaaagtgttttttctgACGTTATTTTAGTC TCTTCGCTTCAATGTAACGACTTCAAgcaaatgacgttattgccctatac ccgggcggttaatgatatttcagccctctgaagcctgGCGGTTTAGTTTC CTCAGCGTgggtatgacaatttgagtcacaaaacctttcaataccgcccg ccgattGAACCTTTAACGGCTttcttaatgaccgctatatggataattaT GGGAAATAAACCTTTCAGGACTTTTTGAAtctatttatcaaattttaagc ATTAAAACTTGTATATAATAGtttgccttaaaatgtttttataatgttat gatatttacaattttgataAGATTATAAATTCTGTCTCGAAATAagtatt ttcttcaaaaaatatttcatgacTAACCTTCTcaagagtttaaaattttc gTCGACACCACCATCGAATTATTATGTTTCAGTGAGACGGATCCTCAAAA CGTATCTTACATACAACGTTTAGACCGTTTCATCAACATTCTTTTGCCAG GATGGAAGGGTACTTTTGTTTCTTGCATCTTTAAGTAAAAGTTCATCAAT CgcgtacccagagccacttacACCACTTCTTTCAtgttactgatggacgt gatacaatTTTGTGAGCGCTATCAAAGTTATCAAAAAGCGAGCTATTGGA CTGCCAAGAGACTGGATACGAGTTTGGTAAAAGTCTGTTCAATTAAATTT AAGCAGATATCTGTCGTTTCCAGTCTTTACGCAGAGTCATTTTCTCTTTC ACCACATTTCCATTAACATCTTTGTGAACCAGTTTCAATTTACCGTCACC GAGATAAAACCGTTCACTATTCAATGTTCTTTTATAATAAACTCTCAATT TCAGTTCTAAATTTTCGAATATTTCTGTAGCATCGTAACTATAGATTTTG AAGATGTGTTTTTGGATATCATTGTAGGGAATAAAATCACTTTCTAGATG GCAAACTGTATTGAGTGGTTCATCAGGGTTAATTGAATCATGGTTGacga ttttgattttaaatttgtaCATGCTTTTATCTGTTGTTGTGTGATCGTGT TGATCTAAGAATGTTAAGTTACTGATGTTAATTTGGATGCCTGGTTTTTT CTCTTGTAGAAAAGAATAAGATACATCTGTTGTGATTTTGCCTTTTGTAG CCTCATCATCAGGCATCATACCCAAAAGAACAAACTTCGAACCAAGTTGT GCTTGTCTACTGTAATAATATCCTTTACtttcgaaagtgaaagtggatGG CTCTTTAGGTGGCGTTTCAGGCGGTGGGTTGAAAATGTCATCAAAGGTAT CGAACGAATCAGACAGATCTGAGCTGAATGAATCTCCATTAATATTTTCG TAGTCACTTTGATGGGAGCTACAACATAAAAGTTGTTGTAGGTAGTTCTT CATCGCCATGTAGATGATAGGTATCCCGAGCAGGAACAAAAGGTTGCATA CAGTGAGATATGTTATTGCTTCTAAAACTGGAAAAGAATAGTCTTTAGAA TGTATGTATGTTAATAGTTCAACCATACTGTAACCTGAGAACAGATCGTC ATGATTTTCTGCACgctacgctgaagctctaaagtgATGTGTGAAACGAA ACAAACGATCTGacaaatttaattatttttctcagatgcttaattttcaa gcgcctttacCATAAACACGTTATTTTCGGGGACGTAATTTTATAACATC GTCAACAAAACACTCCGTAAAATCGTTGCAGGACTCGCTTTGGAATACAg aagagtctctttaactcaaatgtcgccttaactcgaaaaagttctgAGGT CTCTTTGCAGTTAAGTCCAGTTAtgaagactccactgtataataAGAACT CAAAAACGATACACATTTTACCTCACTATTAAAGATATCTTGAAATGAAT TGAAAAGAGAGAAGAATAGTGCTTGACAGTGTTACTGCTGGTAGTTCTTA AAGGAAAAGACGTA

Coding sequence (CDS) from alignment at sc0000095:180622..182935

>TCONS_00009551 ID=TCONS_00009551|Name=TCONS_00009551|organism=Clytia hemisphaerica|type=CDS|length=828bp|location=Sequence derived from alignment at sc0000095:180622..182935 (Clytia hemisphaerica)
TTAAGCAGATATCTGTCGTTTCCAGTCTTTACGCAGAGTCATTTTCTCTT
TCACCACATTTCCATTAACATCTTTGTGAACCAGTTTCAATTTACCGTCA
CCGAGATAAAACCGTTCACTATTCAATGTTCTTTTATAATAAACTCTCAA
TTTCAGTTCTAAATTTTCGAATATTTCTGTAGCATCGTAACTATAGATTT
TGAAGATGTGTTTTTGGATATCATTGTAGGGAATAAAATCACTTTCTAGA
TGGCAAACTGTATTGAGTGGTTCATCAGGGTTAATTGAATCATGGTTGac
gattttgattttaaatttgtaCATGCTTTTATCTGTTGTTGTGTGATCGT
GTTGATCTAAGAATGTTAAGTTACTGATGTTAATTTGGATGCCTGGTTTT
TTCTCTTGTAGAAAAGAATAAGATACATCTGTTGTGATTTTGCCTTTTGT
AGCCTCATCATCAGGCATCATACCCAAAAGAACAAACTTCGAACCAAGTT
GTGCTTGTCTACTGTAATAATATCCTTTACtttcgaaagtgaaagtggat
GGCTCTTTAGGTGGCGTTTCAGGCGGTGGGTTGAAAATGTCATCAAAGGT
ATCGAACGAATCAGACAGATCTGAGCTGAATGAATCTCCATTAATATTTT
CGTAGTCACTTTGATGGGAGCTACAACATAAAAGTTGTTGTAGGTAGTTC
TTCATCGCCATGTAGATGATAGGTATCCCGAGCAGGAACAAAAGGTTGCA
TACAGTGAGATATGTTATTGCTTCTAAAACTGGAAAAGAATAGTCTTTAG
AATGTATGTATGTTAATAGTTCAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005333XLOC_005333Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009551-proteinTCONS_00009551-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009551-exon-sc0000095-1491911889:180622..182935TCONS_00009551-exon-sc0000095-1491911889:180622..182935Clytia hemisphaericaexon
TCONS_00009551-exon-sc0000095-1510915933:180622..182935TCONS_00009551-exon-sc0000095-1510915933:180622..182935Clytia hemisphaericaexon
TCONS_00009551-exon-sc0000095-1575043694:180622..182935TCONS_00009551-exon-sc0000095-1575043694:180622..182935Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095supercontigsc0000095:180622..182935 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.438205 0.218089 0.636512 1.23185 0.727315 0.630702 0.836012 1.20501 1.14155 1.44884 1.55121 0.940849 5.69763 5.31484 3.43396 2.33908 2.07737 2.85691 3.09094 3.25401 2.17556 2.20589 1.21632 0.79162 2.71431 3.10469 1.12093 1.1889 1.76489 1.50051
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009551 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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