TCONS_00009540 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00009540
Unique Name	TCONS_00009540
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2549

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000095:637740..640288-

transcript sequence

>TCONS_00009540 ID=TCONS_00009540|Name=TCONS_00009540|organism=Clytia hemisphaerica|type=transcript|length=2549bp
CtgcaatttctttatttttttgcacatttAGCCAAcccttaaaattttcc
tttgagaaGATCTTGTCCTGCACTTTGTAAACatatttgttatattttat
aCAATATTATATACACTTGAGCTTATTACACCTTCAACTAAAAATAACAA
ATACATGATGAACCTGGGTGtgctttttttgttaattttgagcCAAAAGT
GTTCTTATTGGTGTTCTTGAAGTTAATAATTGGGTTAAAAAAATTAGCGC
TCTAGACTCTAATTTAAAGTTGAGAAGTAAAATAGTTACTGCAATTGCGA
AAGTTTCTTGTGAACTCAGATAATTCTGAGCAAATTATGGCTCATCTATT
CAATTCATATTCTGgccatgttcttacgatgttcttattttccctcaAAT
TTCAGCCTCTAAATGTTCATATACAAcgtgtttcaaataaaaaaaagtga
attcaaaacaaaagacaaattaaaataaataacTCTTTATAAACTTAATA
ACCAACTCATTAGGCAACTTGTTACCGAGTGTCTTACAACTTTACAACCA
TCAGCTCTCAATGTACATAGTCTCATGGTCCTTTTATACAGCAAATAACA
TGCTAAATATTCATTTCTGGAATTAAAACAATTTTCCAATCTATAAGTAT
CCTTTATTAACCCTTTCCTCTATGAAAGTCATAGACACTTTATTAAACGT
TGGGAGGAGCAGGGTTTTGCCTCTTACCTTCATCAACCTCACTATTTGCA
ACAGAAATAACAGCATAGATAAATGATTGACGatacaacaaaaataaaag
ctGGAGCAGCTGATAAGATAGCTATAGACTTATCCAAATCGGTTAGGCAC
TCTTTATGCCAAGGCGTTTGTATGAGTTTACCATCTTCCTTGGCAAAACA
TTCGCGTACTAATTCGTTGCTGCTGTGTTGTTTGATGTTAGCGATGACTC
GTAGTAAAGAAGCTAATGTGAAAAGGGCCAATGATAAATAGAGAAATCCT
TTGTATACGGATAGGCAATGAGGCATTTTACATTTAGATTTATTGATTTG
GGTAGGTGGGATTTCGGTGTTTTCTTGCGGCTCGGAACCTGTTGTGGCTG
AAGTTGAGGGAGATTCAGTGGTTTGGGTAGGTGGGATTTCGGTTTTTTGT
TGCGGCTCGGAACCTGTCGTGGCTGAAGTTGAAAGAGATTTAGTGGTTTG
GGTAGGTGGGATTTCGGTGTTTCGCTGCGGTTTATCTTGGAGTAATTTCC
CAGATTTCCCAGTTTCTTCTTGTAATTCGCCGGCTTCAgtgtcttcattt
ttcttttcctgtGTTGATACATTGGTGTGGATATGGGAAATCACTTCTGC
AAATCCGGAGATACAGACCAAGAATGCAAAGACACATTGAACGATGTCTT
TACCAAACAACCACCATTTGTATTCAccaacaaaataattttccatgTAG
AAGTATTGAAGAATCAATTCAGCACCATTATCAGAGAAAATAATAACAAG
AGCtagaaaaagctgaaaattcgAGTACTCCTTGATCACTTCGTCTCGCT
GCTTTCTCTTTACTTTTATGACTGGACTGTATACGATTGATGGATTTTCT
TGACTTGGTCCAGGCATTGTGTCATCTTGTGGAGTTTCCCCTGTGTCGGT
CAGTCGACTTGGTACTGGCTTTGCGTCATCTTGCGGAGTTTCCACGTTTT
CAATGGTTCTGGCGTATCGTTCATCGCGACCAGTAAATTTCCAGGTGCGA
TAGAAGGAACAAATGGCAATCATCTTGCAGATATATCCGACTATACCGAA
TGCAAAAGCAGATTTTGTTACGTGACTGTTACGGTGAAGTGATTGATGTG
ATCCTTCTAAATGAACAAGATCTCCAAATTCATATGTATAAAAGGCGTAA
AAATCACCAATCATATCAATTAAAAACCACCAATAAGTAACAATCCCAAG
AATGTAACCaacaaaatgtttcatttcaacACAATTATAGTTTCCACATT
TAGTACTGCAACATAAAGAATTGTTTGAGCAACAGTCCTTGCACCAGTTA
AGACAAGAATCGCAACGTTTATCACAATTAAGACAACAACCACAGCAACA
ACAGCAACAGTCTCCATCATCACAACATTCACAACATCTTTCTTTATCAT
CGTTACAGTTGTGAGTGGTATTCAGATAAACTTCAATAAGTTTTCGATTG
TAGTTGAAGAAAAACACAACAAGGCTTATAATGAAAGCAATGAATGGAAT
TGCGATGATAACACCAAGCCAAGCCTTTTTATTCATATCGGACTCCCATA
GCTGGTCAACACCACACCAATATTTGCAACCCTTCGTTATAGGTAATTTG
ATACAAGTTTTCGAACACGGGATGCTCAGCTCTCCTggtttcatttttga
taccaaTTTTTTCTTCGTGTCTCCTCTACTGAGAGATGTTCACAACTACA
CGAAGATCGCGTGCAAAGCCAAAGAAAAATATCATGAGATAAAATATCTT
CCCGTCCTCTCTTCTtcataaaaagaagaaaagatcaAAGGCCCCACAT

Run BLAST on NCBI

transcript from alignment at sc0000095:637740..640288-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00009540 ID=TCONS_00009540|Name=TCONS_00009540|organism=Clytia hemisphaerica|type=transcript|length=2549bp|location=Sequence derived from alignment at sc0000095:637740..640288- (Clytia hemisphaerica)
CTGCAATTTCTTTATTTTTTTGCACATTTAGCCAACCCTTAAAATTTTCC
TTTGAGAAGATCTTGTCCTGCACTTTGTAAACATATTTGTTATATTTTAT
ACAATATTATATACACTTGAGCTTATTACACCTTCAACTAAAAATAACAA
ATACATGATGAACCTGGGTGTGCTTTTTTTGTTAATTTTGAGCCAAAAGT
GTTCTTATTGGTGTTCTTGAAGTTAATAATTGGGTTAAAAAAATTAGCGC
TCTAGACTCTAATTTAAAGTTGAGAAGTAAAATAGTTACTGCAATTGCGA
AAGTTTCTTGTGAACTCAGATAATTCTGAGCAAATTATGGCTCATCTATT
CAATTCATATTCTGGCCATGTTCTTACGATGTTCTTATTTTCCCTCAAAT
TTCAGCCTCTAAATGTTCATATACAACGTGTTTCAAATAAAAAAAAGTGA
ATTCAAAACAAAAGACAAATTAAAATAAATAACTCTTTATAAACTTAATA
ACCAACTCATTAGGCAACTTGTTACCGAGTGTCTTACAACTTTACAACCA
TCAGCTCTCAATGTACATAGTCTCATGGTCCTTTTATACAGCAAATAACA
TGCTAAATATTCATTTCTGGAATTAAAACAATTTTCCAATCTATAAGTAT
CCTTTATTAACCCTTTCCTCTATGAAAGTCATAGACACTTTATTAAACGT
TGGGAGGAGCAGGGTTTTGCCTCTTACCTTCATCAACCTCACTATTTGCA
ACAGAAATAACAGCATAGATAAATGATTGACGATACAACAAAAATAAAAG
CTGGAGCAGCTGATAAGATAGCTATAGACTTATCCAAATCGGTTAGGCAC
TCTTTATGCCAAGGCGTTTGTATGAGTTTACCATCTTCCTTGGCAAAACA
TTCGCGTACTAATTCGTTGCTGCTGTGTTGTTTGATGTTAGCGATGACTC
GTAGTAAAGAAGCTAATGTGAAAAGGGCCAATGATAAATAGAGAAATCCT
TTGTATACGGATAGGCAATGAGGCATTTTACATTTAGATTTATTGATTTG
GGTAGGTGGGATTTCGGTGTTTTCTTGCGGCTCGGAACCTGTTGTGGCTG
AAGTTGAGGGAGATTCAGTGGTTTGGGTAGGTGGGATTTCGGTTTTTTGT
TGCGGCTCGGAACCTGTCGTGGCTGAAGTTGAAAGAGATTTAGTGGTTTG
GGTAGGTGGGATTTCGGTGTTTCGCTGCGGTTTATCTTGGAGTAATTTCC
CAGATTTCCCAGTTTCTTCTTGTAATTCGCCGGCTTCAGTGTCTTCATTT
TTCTTTTCCTGTGTTGATACATTGGTGTGGATATGGGAAATCACTTCTGC
AAATCCGGAGATACAGACCAAGAATGCAAAGACACATTGAACGATGTCTT
TACCAAACAACCACCATTTGTATTCACCAACAAAATAATTTTCCATGTAG
AAGTATTGAAGAATCAATTCAGCACCATTATCAGAGAAAATAATAACAAG
AGCTAGAAAAAGCTGAAAATTCGAGTACTCCTTGATCACTTCGTCTCGCT
GCTTTCTCTTTACTTTTATGACTGGACTGTATACGATTGATGGATTTTCT
TGACTTGGTCCAGGCATTGTGTCATCTTGTGGAGTTTCCCCTGTGTCGGT
CAGTCGACTTGGTACTGGCTTTGCGTCATCTTGCGGAGTTTCCACGTTTT
CAATGGTTCTGGCGTATCGTTCATCGCGACCAGTAAATTTCCAGGTGCGA
TAGAAGGAACAAATGGCAATCATCTTGCAGATATATCCGACTATACCGAA
TGCAAAAGCAGATTTTGTTACGTGACTGTTACGGTGAAGTGATTGATGTG
ATCCTTCTAAATGAACAAGATCTCCAAATTCATATGTATAAAAGGCGTAA
AAATCACCAATCATATCAATTAAAAACCACCAATAAGTAACAATCCCAAG
AATGTAACCAACAAAATGTTTCATTTCAACACAATTATAGTTTCCACATT
TAGTACTGCAACATAAAGAATTGTTTGAGCAACAGTCCTTGCACCAGTTA
AGACAAGAATCGCAACGTTTATCACAATTAAGACAACAACCACAGCAACA
ACAGCAACAGTCTCCATCATCACAACATTCACAACATCTTTCTTTATCAT
CGTTACAGTTGTGAGTGGTATTCAGATAAACTTCAATAAGTTTTCGATTG
TAGTTGAAGAAAAACACAACAAGGCTTATAATGAAAGCAATGAATGGAAT
TGCGATGATAACACCAAGCCAAGCCTTTTTATTCATATCGGACTCCCATA
GCTGGTCAACACCACACCAATATTTGCAACCCTTCGTTATAGGTAATTTG
ATACAAGTTTTCGAACACGGGATGCTCAGCTCTCCTGGTTTCATTTTTGA
TACCAATTTTTTCTTCGTGTCTCCTCTACTGAGAGATGTTCACAACTACA
CGAAGATCGCGTGCAAAGCCAAAGAAAAATATCATGAGATAAAATATCTT
CCCGTCCTCTCTTCTTCATAAAAAGAAGAAAAGATCAAAGGCCCCACAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005322	XLOC_005322	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00009540-exon-sc0000095-1575043694:637740..640288	TCONS_00009540-exon-sc0000095-1575043694:637740..640288	Clytia hemisphaerica	exon
TCONS_00009540-exon-sc0000095-1510915933:637740..640288	TCONS_00009540-exon-sc0000095-1510915933:637740..640288	Clytia hemisphaerica	exon
TCONS_00009540-exon-sc0000095-1491911889:637740..640288	TCONS_00009540-exon-sc0000095-1491911889:637740..640288	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000095	supercontig	sc0000095:637740..640288 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0171665	0	0.0817841	0.0484702	0.622069	0.609544	0.943741	0.790106	1.06871	1.57006	2.60616	2.17472	13.0431	9.22206	1.59091	1.24878	4.42619	7.94952	0.478308	0.622368	0.166242	0.17062	0.130248	0.240538	0.154552	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00009540 vs. Swiss-Prot (Human)

BLAST of TCONS_00009540 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00009540 (transcript) - C. hemisphaerica