TCONS_00009525 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009525
Unique NameTCONS_00009525
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length821

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009525 ID=TCONS_00009525|Name=TCONS_00009525|organism=Clytia hemisphaerica|type=transcript|length=821bp
TGCACGTACTCAGTGACCAAAAATTTGAGACATTTGAAGAATGGTAAAAG
TGAGACAACGTTTCATCAGCTTGAGCATATGTGGGGCGATTATGATCATG
CGGCGTATAGTGAACGTCAAACATGTGATATTTTCCATGGATTTAAAATG
AAGTATTGTTGTCAAAcATCAAGTGGAAGCTTAATTTCAGGAACATGCAA
AACAATTTCTTACATTGAGAACATTGATTCTGCGAGACCCAGAGTTATAT
GCCGACGTGGAAGTGCTAGATCAATGGGAAAAAGAAACCAAGCATTTACG
GTAGAAGGAAGTAAATGGCAGGAAACATACACCAATGTTAAAGAAATGGT
TTGCAATGTTGATGCAGATGCTGGTCAAACTtgcttttataagcaaccac
tCTTGTTGGAATATACTTGTGAAGAACATTAAAAAATTTACGGAAAACTT
CCGCCATTGTGGAAGAAAAAGTTCAATTTGCAGATATCGCCACTTTGTCT
TTCTCAAGCCACGTTTTGCTTGAGTAAGAGACAGAGTAGTTCTATCTTGT
GTTTTGTATATAAGACATATGTGAAGGATTCGCCTTCAACAACACCAGAA
CATCTACTTCCGAAATGGCGGATTTTCTCTTAGTTACGTAACTTTGGTAA
AAGCTGATAAAACATCCatattatttcaaatatttttttgttaagcATGC
GCTGActttagtttttttgttatgaCACAGTAAACATTTtgtaattatca
cccaaaattaatttgaaaaaaaatgatatcATTGCTAAACAAAAAAGAAT
GTCTCAAAATGAAAACTTAAC
Run BLAST on NCBI

transcript from alignment at sc0000095:425799..428856-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009525 ID=TCONS_00009525|Name=TCONS_00009525|organism=Clytia hemisphaerica|type=transcript|length=3058bp|location=Sequence derived from alignment at sc0000095:425799..428856- (Clytia hemisphaerica)
TGCACGTACTCAGTGACCAAAAATTTGAGACATTTGAAGAATGGTAAAAG
TGAGACAACGTTTCATCAGCTTGAGCATATGTGGGGCGATTATGATCATG
CGGCGTATAGTGAACGTCAAACATGTGATATTTTCCATGGATTTAAAATG
AAGTATTGTTGTCAAAGTAAGTCATAGTTTCTCTGAATAAACAAAAACCC
TTCCCGTCATACTCTTCGAGATCCTTTTCCCTTCCTCCATCTCTTTGAGT
TCTCTATTCATTCACTTTCTACCATGACTCAATACATTCCCTAAGNAACT
AAAATACTGAAAAACGCGCGCAAAATTATGAGATGTTTGCCCAACTTCCT
TATGCGTGAAGCTATGAATGCCATCCTCAGAAGCTTTATGCTTCCTCCGG
TGGCAATGACTCGATTGTAATTAGAATATTTTCCTAGTGTCTAATTATTG
CGTGACCAGATAAAACTTCTCGTTTTGAAGATAATTTCTTCTCAAAAGAT
TAAAGTCAGCGAGATTTGAAACGATATTTCGGTTCAACCGTCCCCACGAA
TATAAAATTCTTGGAAAGGTTATGTTATTCACGGAATTAATTTTAAATTT
AAAAGTGAAGTTCGGATATGTTTTCTACGGAAACTTCCCGGTTTTTACCA
GTAGTTGCAAATTAAAACAATTTTTCTCTAGCTTATATTGTCAACTACTG
GTAAAACCCGGGGGTGTTTCCCGGAGAAAATGTTACGTCATAAACATCAT
GAAAATCTTTGATAATATTATTTCTATATCGCTTTTAGTCCAAATATGCA
ATGGTTGCAAAGACGGTCTCAAGAAGGATGTTTCATGTACAAACGGTCGT
AAAATTCACGTCAAATCTGCCAACATCATTATGGTCAGAGAAGGACAAGA
ATTTGAGGTTTCGAACTCCGACTGCACGTACTCAGTGACCAAAAATTTGA
GACATTTGAAGAATGGTAAAAGTGAGACAACGTTTCATCAGCTTGAGCAT
ATGTGGGGCGATTATGATCATGCGGCGTATAGTGAACGTCAAACATGTGA
TATTTTCCATGGATTTAAAATGAAGTATTGTTGTCAAAGTAAGTCATAGT
TTCTCTGAATAAACAAAAACCCTACCCGTCATACTCTTCGAGATCCTTTC
TCCTTCCTCCATCTCTTTGAGTTCTCTATTCATTCACTTTCTACCATGAC
TCAATACATTCCCTAGACTATGTTATAGTCTAAGACGAATCACGACTATC
TAAGAAAAAAGCCCGAAGCCGAAGAAAATTCGCAAACAGATTTTTTTTAC
CGAAAAGAGTTTACAGTCGGTAGAGTTGCCAGACTTTCTTCGAAACTCTC
CCGCCGATTTTTTCCCCTATACCGCCATAACGCCATACCACCATATTTTC
CCGCCTTTACTATCATTGTAACGGACGATAACATCGTCTATACGTTCCAT
CACCTCACATTTCTCCGTATTATGAAAATGATTTATGGGTTATCCAACTT
CATTATTATATTCCATCAATTTTTTGACGTGAGAGCCAACTTTTATAAAC
CAATCTTATTCTGTATAACATTAAATTTAATTGATTTCAATCGTCCATTT
AACGTTAGATTGACGTTTAAAACAACGTTGTGTGCCAGCTGGGATAACAC
TAGTAAGAACATTTTAAGCTCAAAACTGGCAAAAAAAATAGCGCAACCGA
GCCTAGATGACGCTATCGTCCATTTAGAGGGTCAGTAAACGGGAGAAAGT
ATATGCGCAGAGTCAGGGCGTCAGGGTGGTTTACGGAAAAAATAGTGGCG
GTAGAGTTTTGGAACACTGAAAACACCTCCGCCACTGTTTACTACGCCCC
GAACTGAACTCCGTTTTCAAATTTATCCCGCCTCCTGAATTATTCCCTAC
AGAGCCCAGCCAGGAGTAAGACTTTAAAAAAAGTGTGTAGTACGTTATTC
AGATTTGATCTGGTTTGGAATACTTCACCTTGAAAAACTTTTTTATTTAT
AGCATCAAGTGGAAGCTTAATTTCAGGAACATGCAAAACAAGTAAGTCAG
TTTTTTCAAAAAGATTTTTCTACCGAATGTTTCAAAAAAACCGTGTACAA
AATTGAATGGTTTTTGAGTGGTTTACCCCTCGTGCCAAGTTAGGGATATT
GGGGCCTAAAGTTTTGTAATTTTACGAGGCTACCTGTTCTTTGTGGGTAG
TTAGCTGTTTTGATTGAGGCTCAACTGTATTTTCAAAGTTGATGAATATT
TTGCATTGTTAATAAATTTTTAACCTACTGTAAGAGCTCAATTTCTCGAT
TTCGTTTCTTTCATATTGGGATACCAAACTCAAAGCAATTGCTCAAGAGG
GCCTAAATCTCTGGGGGCACTTTACTTCAATGGGTGCACGGAATGTGAGC
TAAAACCATGAAGTGTAATTTTCATCTCACTGTATTTTTTAGTTTCTTAC
ATTGAGAACATTGATTCTGCGAGACCCAGAGTTATATGCCGACGTGGAAG
TGCTAGATCAATGGGAAAAAGAAACCAAGCATTTACGGTAGAAGGAAGTA
AATGGCAGGAAACATACACCAATGTTAAAGAAATGGTTTGCAATGTTGAT
GCAGATGCTGGTCAAACTTGCTTTTATAAGCAACCACTCTTGTTGGAATA
TACTTGTGAAGAACATTAAAAAATTTACGGAAAACTTCCGCCATTGTGGA
AGAAAAAGTTCAATTTGCAGATATCGCCACTTTGTCTTTCTCAAGCCACG
TTTTGCTTGAGTAAGAGACAGAGTAGTTCTATCTTGTGTTTTGTATATAA
GACATATGTGAAGGATTCGCCTTCAACAACACCAGAACATCTACTTCCGA
AATGGCGGATTTTCTCTTAGTTACGTAACTTTGGTAAAAGCTGATAAAAC
ATCCATATTATTTCAAATATTTTTTTGTTAAGCATGCGCTGACTTTAGTT
TTTTTGTTATGACACAGTAAACATTTTGTAATTATCACCCAAAATTAATT
TGAAAAAAAATGATATCATTGCTAAACAAAAAAGAATGTCTCAAAATGAA
AACTTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005316XLOC_005316Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009525-exon-sc0000095-1575043694:428691..428856TCONS_00009525-exon-sc0000095-1575043694:428691..428856Clytia hemisphaericaexon
TCONS_00009525-exon-sc0000095-1575043694:426816..426854TCONS_00009525-exon-sc0000095-1575043694:426816..426854Clytia hemisphaericaexon
TCONS_00009525-exon-sc0000095-1575043694:425799..426414TCONS_00009525-exon-sc0000095-1575043694:425799..426414Clytia hemisphaericaexon
TCONS_00009525-exon-sc0000095-1510915933:428691..428856TCONS_00009525-exon-sc0000095-1510915933:428691..428856Clytia hemisphaericaexon
TCONS_00009525-exon-sc0000095-1510915933:426816..426854TCONS_00009525-exon-sc0000095-1510915933:426816..426854Clytia hemisphaericaexon
TCONS_00009525-exon-sc0000095-1510915933:425799..426414TCONS_00009525-exon-sc0000095-1510915933:425799..426414Clytia hemisphaericaexon
TCONS_00009525-exon-sc0000095-1491911889:428691..428856TCONS_00009525-exon-sc0000095-1491911889:428691..428856Clytia hemisphaericaexon
TCONS_00009525-exon-sc0000095-1491911889:426816..426854TCONS_00009525-exon-sc0000095-1491911889:426816..426854Clytia hemisphaericaexon
TCONS_00009525-exon-sc0000095-1491911889:425799..426414TCONS_00009525-exon-sc0000095-1491911889:425799..426414Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095supercontigsc0000095:425799..428856 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0617757	0	0.0817075	0	0	0	0.00440212	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009525 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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