TCONS_00009516 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009516
Unique NameTCONS_00009516
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length986

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009516 ID=TCONS_00009516|Name=TCONS_00009516|organism=Clytia hemisphaerica|type=transcript|length=986bp
CTTTCagcattaaaaatgaaataaaataagaaaaaaataatggaaaCAAT
AAAAGCTGATGTCATCACAGAGCGTTTGGAAACCGAACTGGAAAATGAAT
TGCTTCCTGGAGTTAGTGCTCTTGGTTCAGATGTAGCAGCCCTTGCTGGT
GAATTAGACTTCAGAGTGGATGAAATCAATTACATTTGCTCAAAGACATC
ACCATTTAAATTCCTTCTTGATCAATGGTGTAAGAGGGATCGAAAGAAGG
CCACACTCAACCAGTTGGCTGGGAGCTTGAAAGAAATCAGAAGACCAGAT
CTGGCTGAGAAAGTCGAAACGTTCATGTCAAGCATCAATAAAGCTACATA
TTTGGAACTTCAAGAAATTGTCAATATACAAGATCAAAGATTGAAACGAA
GGGAGGAAGATGATAGCTTTTTTGCCGAATCTCTTGATCAAGAGCCAGCT
GAAGAATCACCTTTGGTCTATGCGATGTATTTTGCCGAAGACGAGCTTTA
CGAAAACGAAGTAGAAACATTCGTTGCTGATCTTCGTTTAGAATATAGTA
TTGATGTCAGGACTAACCTTTCATCTAAGGAATACGCAATGAATaaacaa
gtttttgtttttgacaGTTTAATGAAAGCAGACTATGTGCTGATTTTCTG
TAGCCCAGCTTTTAAAGTAGCTGAAGATCATAAAGTGGCAAAAAGACCTC
AGCCTTCAGagCGCCACAACGAGTTAATGTTTTGTCTACACTACATCATT
AAAGAGATATATAGGAACAAATCAGTTAATCGAAAATATATACCCATCAC
CATGAAAGAACAATATAGAGAAACACCTATTTTGAAAGCCTTACTATCAC
CTAAGAGATACCATATGCCTGGTGACAAGGATCAACTTGTACGGAGATTG
TTGTCTGTTGAAGACTGTGTATTACCGACTGTCCAAAGACAAAAAGAATT
TAAGCCGAGAAAATTTATTCCGCGATAATTCTGCGG
Run BLAST on NCBI

protein sequence of TCONS_00009516-protein

>TCONS_00009516-protein ID=TCONS_00009516-protein|Name=TCONS_00009516-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
METIKADVITERLETELENELLPGVSALGSDVAALAGELDFRVDEINYIC
SKTSPFKFLLDQWCKRDRKKATLNQLAGSLKEIRRPDLAEKVETFMSSIN
KATYLELQEIVNIQDQRLKRREEDDSFFAESLDQEPAEESPLVYAMYFAE
DELYENEVETFVADLRLEYSIDVRTNLSSKEYAMNKQVFVFDSLMKADYV
LIFCSPAFKVAEDHKVAKRPQPSERHNELMFCLHYIIKEIYRNKSVNRKY
IPITMKEQYRETPILKALLSPKRYHMPGDKDQLVRRLLSVEDCVLPTVQR
QKEFKPRKFIPR
Run BLAST on NCBI

transcript from alignment at sc0000095:296464..298657-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009516 ID=TCONS_00009516|Name=TCONS_00009516|organism=Clytia hemisphaerica|type=transcript|length=2194bp|location=Sequence derived from alignment at sc0000095:296464..298657- (Clytia hemisphaerica)
CTTTCAGCATTAAAAATGAAATAAAATAAGAAAAAAATAATGGAAACAAT
AAAAGCTGATGTCATCACAGAGCGTTTGGAAACCGAACTGGGTAAAACAC
ATTTTTTGTTGTTGATATTTTTGAATATTGTATTAATGTATAAAATAAAG
TATGAAATTGTATATACTTCCCATAAATAAGATTAGTTAACAAATAGACT
ATCGATAAACACTAGGTCAATATTTTATTATATTTAAGGCTTTCCTTTGA
ATCTTTTAAACAGCTGTTGTTGAAACGCATAGCTGAATACATTATTTGCA
GTGAGTGAACACCGAAATACTCCACTTTAAAGTCTTGGGAAGAAAATGTC
AAGCGATAAAATCATATGCTTGCACATGACAAATAAAGTGAATAAATTTT
GAAAAATAAATCTGGGTTCTCACTCATCTTTTCTAGAAAATGAATTGCTT
CCTGGAGTTAGTGCTCTTGGTTCAGATGTAGCAGCCCTTGCTGGTGAATT
AGACTTCAGAGTGGATGAAATCAATTACATTTGCTCAAAGACATCACCAT
TTAAATTCCTTCTTGATCAATGGTGTAAGAGGGATCGAAAGAAGGCCACA
CTCAACCAGTTGGCTGGGAGCTTGAAAGAAATCAGAAGACCAGATCTGGC
TGAGAAAGTCGAAACGTTCATGTCAAGTGAAGATCTTTGTTTTATATTTA
TCTTCTGCTCGAACTATTTAAGAGATTTACTTGTTTAAGTCACTTTGATT
GCAACTACCATTATATATTACAGAAACACATGAAAACACAATTTTAATGT
TTTCGGATCTTCCTTCTTCTTGCTTTATTAAACAGTAATAAGACTTTTTC
AAACACTTTTAGGCATCAATAAAGCTACATATTTGGAACTTCAAGAAATT
GTCAATATACAAGATCAAAGATTGAAACGAAGGGAGGAAGGTATCTTTTC
GTATCTCTTTATTATGTATAACTACCTTTAGCTTTTAGCTTTTTTAAATG
CCACAAGTATTCTTTGTTGAATCTTTCATTGCCATATTAATGTTATTGGT
AATATCGTTGATTGATATTAATTTAAAAGATTTTGTACAACAGTACTTTA
GCATAATCTGAATATTAAAAACAATCATATCATATCATCACTATGTTGTT
GTATAAATAGCCATGAAGTGAGAATTACCCAAAAAGAAGTTCCTTTTTAA
AATAACGGATTGGAAACATGTAGACCCCATGACTCAATTTCTAAATATTT
CTTACTTTAAAATCTCATTTTTATTCTAGATGATAGCTTTTTTGCCGAAT
CTCTTGATCAAGAGCCAGCTGAAGAATCACCTTTGGTCTATGCGATGTAT
TTTGCCGAAGACGAGCTTTACGAAAACGAAGTAGAAACATTCGTTGCTGA
TCTTCGTTTAGAATATAGTATTGATGTCAGGACTAACCTTTCATCTAAGG
AATACGCAATGAATAAACAAGTTTTTGTTTTTGACAGTTTAATGAAAGCA
GACTATGTGCTGATTTTCTGTAGCCCAGCTTTTAAAGTAGCTGAAGATCA
TAAAGTGGCAAAAAGACCTCAGCCTTCAGGTAAGATTGATATTTTCATTC
AACAAAACGATCAATACAACCTTAACGAATTTGGGGAAATGGTCTTCTAA
GGACAAGATTTGTTTTATTTTGATACTTTATAAAAAAAAGCCAAACAATA
TCTCTCAAGCATTAATTATTCTTTACATATTGTATATCAGATCTGAAAGC
ACTTATTGTGTTTTATTTCGTGCAGAATTATCCAAAAATAGTTTTCTCCT
TTCTTAAATACCAATTTTGCTCCACATTCGTGTCAATTCAATATGATGAA
GCCTGTAGTTTAAAAAGGCTGAGCAAGCAAACAGTATCAACCTTTATCCT
GATTTCTTTGATTTTAGAGCGCCACAACGAGTTAATGTTTTGTCTACACT
ACATCATTAAAGAGATATATAGGAACAAATCAGTTAATCGAAAATATATA
CCCATCACCATGAAAGAACAATATAGAGAAACACCTATTTTGAAAGCCTT
ACTATCACCTAAGAGATACCATATGCCTGGTGACAAGGATCAACTTGTAC
GGAGATTGTTGTCTGTTGAAGACTGTGTATTACCGACTGTCCAAAGACAA
AAAGAATTTAAGCCGAGAAAATTTATTCCGCGATAATTCTGCGG

Coding sequence (CDS) from alignment at sc0000095:296464..298657-

>TCONS_00009516 ID=TCONS_00009516|Name=TCONS_00009516|organism=Clytia hemisphaerica|type=CDS|length=4695bp|location=Sequence derived from alignment at sc0000095:296464..298657- (Clytia hemisphaerica)
AGCGCCACAACGAGTTAATGTTTTGTCTACACTACATCATTAAAGAGATA
TATAGGAACAAATCAGTTAATCGAAAATATATACCCATCACCATGAAAGA
ACAATATAGAGAAACACCTATTTTGAAAGCCTTACTATCACCTAAGAGAT
ACCATATGCCTGGTGACAAGGATCAACTTGTACGGAGATTGTTGTCTGTT
GAAGACTGTGTATTACCGACTGTCCAAAGACAAAAAGAATTTAAGCCGAG
AAAATTTATTCCGCGATAAATGATAGCTTTTTTGCCGAATCTCTTGATCA
AGAGCCAGCTGAAGAATCACCTTTGGTCTATGCGATGTATTTTGCCGAAG
ACGAGCTTTACGAAAACGAAGTAGAAACATTCGTTGCTGATCTTCGTTTA
GAATATAGTATTGATGTCAGGACTAACCTTTCATCTAAGGAATACGCAAT
GAATAAACAAGTTTTTGTTTTTGACAGTTTAATGAAAGCAGACTATGTGC
TGATTTTCTGTAGCCCAGCTTTTAAAGTAGCTGAAGATCATAAAGTGGCA
AAAAGACCTCAGCCTTCAGGCATCAATAAAGCTACATATTTGGAACTTCA
AGAAATTGTCAATATACAAGATCAAAGATTGAAACGAAGGGAGGAAGAAA
ATGAATTGCTTCCTGGAGTTAGTGCTCTTGGTTCAGATGTAGCAGCCCTT
GCTGGTGAATTAGACTTCAGAGTGGATGAAATCAATTACATTTGCTCAAA
GACATCACCATTTAAATTCCTTCTTGATCAATGGTGTAAGAGGGATCGAA
AGAAGGCCACACTCAACCAGTTGGCTGGGAGCTTGAAAGAAATCAGAAGA
CCAGATCTGGCTGAGAAAGTCGAAACGTTCATGTCAAATGGAAACAATAA
AAGCTGATGTCATCACAGAGCGTTTGGAAACCGAACTGGAGCGCCACAAC
GAGTTAATGTTTTGTCTACACTACATCATTAAAGAGATATATAGGAACAA
ATCAGTTAATCGAAAATATATACCCATCACCATGAAAGAACAATATAGAG
AAACACCTATTTTGAAAGCCTTACTATCACCTAAGAGATACCATATGCCT
GGTGACAAGGATCAACTTGTACGGAGATTGTTGTCTGTTGAAGACTGTGT
ATTACCGACTGTCCAAAGACAAAAAGAATTTAAGCCGAGAAAATTTATTC
CGCGATAAATGATAGCTTTTTTGCCGAATCTCTTGATCAAGAGCCAGCTG
AAGAATCACCTTTGGTCTATGCGATGTATTTTGCCGAAGACGAGCTTTAC
GAAAACGAAGTAGAAACATTCGTTGCTGATCTTCGTTTAGAATATAGTAT
TGATGTCAGGACTAACCTTTCATCTAAGGAATACGCAATGAATAAACAAG
TTTTTGTTTTTGACAGTTTAATGAAAGCAGACTATGTGCTGATTTTCTGT
AGCCCAGCTTTTAAAGTAGCTGAAGATCATAAAGTGGCAAAAAGACCTCA
GCCTTCAGGCATCAATAAAGCTACATATTTGGAACTTCAAGAAATTGTCA
ATATACAAGATCAAAGATTGAAACGAAGGGAGGAAGAAAATGAATTGCTT
CCTGGAGTTAGTGCTCTTGGTTCAGATGTAGCAGCCCTTGCTGGTGAATT
AGACTTCAGAGTGGATGAAATCAATTACATTTGCTCAAAGACATCACCAT
TTAAATTCCTTCTTGATCAATGGTGTAAGAGGGATCGAAAGAAGGCCACA
CTCAACCAGTTGGCTGGGAGCTTGAAAGAAATCAGAAGACCAGATCTGGC
TGAGAAAGTCGAAACGTTCATGTCAAATGGAAACAATAAAAGCTGATGTC
ATCACAGAGCGTTTGGAAACCGAACTGGAGCGCCACAACGAGTTAATGTT
TTGTCTACACTACATCATTAAAGAGATATATAGGAACAAATCAGTTAATC
GAAAATATATACCCATCACCATGAAAGAACAATATAGAGAAACACCTATT
TTGAAAGCCTTACTATCACCTAAGAGATACCATATGCCTGGTGACAAGGA
TCAACTTGTACGGAGATTGTTGTCTGTTGAAGACTGTGTATTACCGACTG
TCCAAAGACAAAAAGAATTTAAGCCGAGAAAATTTATTCCGCGATAAATG
ATAGCTTTTTTGCCGAATCTCTTGATCAAGAGCCAGCTGAAGAATCACCT
TTGGTCTATGCGATGTATTTTGCCGAAGACGAGCTTTACGAAAACGAAGT
AGAAACATTCGTTGCTGATCTTCGTTTAGAATATAGTATTGATGTCAGGA
CTAACCTTTCATCTAAGGAATACGCAATGAATAAACAAGTTTTTGTTTTT
GACAGTTTAATGAAAGCAGACTATGTGCTGATTTTCTGTAGCCCAGCTTT
TAAAGTAGCTGAAGATCATAAAGTGGCAAAAAGACCTCAGCCTTCAGGCA
TCAATAAAGCTACATATTTGGAACTTCAAGAAATTGTCAATATACAAGAT
CAAAGATTGAAACGAAGGGAGGAAGAAAATGAATTGCTTCCTGGAGTTAG
TGCTCTTGGTTCAGATGTAGCAGCCCTTGCTGGTGAATTAGACTTCAGAG
TGGATGAAATCAATTACATTTGCTCAAAGACATCACCATTTAAATTCCTT
CTTGATCAATGGTGTAAGAGGGATCGAAAGAAGGCCACACTCAACCAGTT
GGCTGGGAGCTTGAAAGAAATCAGAAGACCAGATCTGGCTGAGAAAGTCG
AAACGTTCATGTCAAATGGAAACAATAAAAGCTGATGTCATCACAGAGCG
TTTGGAAACCGAACTGGAGCGCCACAACGAGTTAATGTTTTGTCTACACT
ACATCATTAAAGAGATATATAGGAACAAATCAGTTAATCGAAAATATATA
CCCATCACCATGAAAGAACAATATAGAGAAACACCTATTTTGAAAGCCTT
ACTATCACCTAAGAGATACCATATGCCTGGTGACAAGGATCAACTTGTAC
GGAGATTGTTGTCTGTTGAAGACTGTGTATTACCGACTGTCCAAAGACAA
AAAGAATTTAAGCCGAGAAAATTTATTCCGCGATAAATGATAGCTTTTTT
GCCGAATCTCTTGATCAAGAGCCAGCTGAAGAATCACCTTTGGTCTATGC
GATGTATTTTGCCGAAGACGAGCTTTACGAAAACGAAGTAGAAACATTCG
TTGCTGATCTTCGTTTAGAATATAGTATTGATGTCAGGACTAACCTTTCA
TCTAAGGAATACGCAATGAATAAACAAGTTTTTGTTTTTGACAGTTTAAT
GAAAGCAGACTATGTGCTGATTTTCTGTAGCCCAGCTTTTAAAGTAGCTG
AAGATCATAAAGTGGCAAAAAGACCTCAGCCTTCAGGCATCAATAAAGCT
ACATATTTGGAACTTCAAGAAATTGTCAATATACAAGATCAAAGATTGAA
ACGAAGGGAGGAAGAAAATGAATTGCTTCCTGGAGTTAGTGCTCTTGGTT
CAGATGTAGCAGCCCTTGCTGGTGAATTAGACTTCAGAGTGGATGAAATC
AATTACATTTGCTCAAAGACATCACCATTTAAATTCCTTCTTGATCAATG
GTGTAAGAGGGATCGAAAGAAGGCCACACTCAACCAGTTGGCTGGGAGCT
TGAAAGAAATCAGAAGACCAGATCTGGCTGAGAAAGTCGAAACGTTCATG
TCAAATGGAAACAATAAAAGCTGATGTCATCACAGAGCGTTTGGAAACCG
AACTGGAGCGCCACAACGAGTTAATGTTTTGTCTACACTACATCATTAAA
GAGATATATAGGAACAAATCAGTTAATCGAAAATATATACCCATCACCAT
GAAAGAACAATATAGAGAAACACCTATTTTGAAAGCCTTACTATCACCTA
AGAGATACCATATGCCTGGTGACAAGGATCAACTTGTACGGAGATTGTTG
TCTGTTGAAGACTGTGTATTACCGACTGTCCAAAGACAAAAAGAATTTAA
GCCGAGAAAATTTATTCCGCGATAAATGATAGCTTTTTTGCCGAATCTCT
TGATCAAGAGCCAGCTGAAGAATCACCTTTGGTCTATGCGATGTATTTTG
CCGAAGACGAGCTTTACGAAAACGAAGTAGAAACATTCGTTGCTGATCTT
CGTTTAGAATATAGTATTGATGTCAGGACTAACCTTTCATCTAAGGAATA
CGCAATGAATAAACAAGTTTTTGTTTTTGACAGTTTAATGAAAGCAGACT
ATGTGCTGATTTTCTGTAGCCCAGCTTTTAAAGTAGCTGAAGATCATAAA
GTGGCAAAAAGACCTCAGCCTTCAGGCATCAATAAAGCTACATATTTGGA
ACTTCAAGAAATTGTCAATATACAAGATCAAAGATTGAAACGAAGGGAGG
AAGAAAATGAATTGCTTCCTGGAGTTAGTGCTCTTGGTTCAGATGTAGCA
GCCCTTGCTGGTGAATTAGACTTCAGAGTGGATGAAATCAATTACATTTG
CTCAAAGACATCACCATTTAAATTCCTTCTTGATCAATGGTGTAAGAGGG
ATCGAAAGAAGGCCACACTCAACCAGTTGGCTGGGAGCTTGAAAGAAATC
AGAAGACCAGATCTGGCTGAGAAAGTCGAAACGTTCATGTCAAATGGAAA
CAATAAAAGCTGATGTCATCACAGAGCGTTTGGAAACCGAACTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005311XLOC_005311Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009516-exon-sc0000095-1575043694:298567..298657TCONS_00009516-exon-sc0000095-1575043694:298567..298657Clytia hemisphaericaexon
TCONS_00009516-exon-sc0000095-1575043694:297982..298221TCONS_00009516-exon-sc0000095-1575043694:297982..298221Clytia hemisphaericaexon
TCONS_00009516-exon-sc0000095-1575043694:297718..297795TCONS_00009516-exon-sc0000095-1575043694:297718..297795Clytia hemisphaericaexon
TCONS_00009516-exon-sc0000095-1575043694:297079..297378TCONS_00009516-exon-sc0000095-1575043694:297079..297378Clytia hemisphaericaexon
TCONS_00009516-exon-sc0000095-1575043694:296464..296740TCONS_00009516-exon-sc0000095-1575043694:296464..296740Clytia hemisphaericaexon
TCONS_00009516-exon-sc0000095-1510915933:298567..298657TCONS_00009516-exon-sc0000095-1510915933:298567..298657Clytia hemisphaericaexon
TCONS_00009516-exon-sc0000095-1510915933:297982..298221TCONS_00009516-exon-sc0000095-1510915933:297982..298221Clytia hemisphaericaexon
TCONS_00009516-exon-sc0000095-1510915933:297718..297795TCONS_00009516-exon-sc0000095-1510915933:297718..297795Clytia hemisphaericaexon
TCONS_00009516-exon-sc0000095-1510915933:297079..297378TCONS_00009516-exon-sc0000095-1510915933:297079..297378Clytia hemisphaericaexon
TCONS_00009516-exon-sc0000095-1510915933:296464..296740TCONS_00009516-exon-sc0000095-1510915933:296464..296740Clytia hemisphaericaexon
TCONS_00009516-exon-sc0000095-1491911889:298567..298657TCONS_00009516-exon-sc0000095-1491911889:298567..298657Clytia hemisphaericaexon
TCONS_00009516-exon-sc0000095-1491911889:297982..298221TCONS_00009516-exon-sc0000095-1491911889:297982..298221Clytia hemisphaericaexon
TCONS_00009516-exon-sc0000095-1491911889:297718..297795TCONS_00009516-exon-sc0000095-1491911889:297718..297795Clytia hemisphaericaexon
TCONS_00009516-exon-sc0000095-1491911889:297079..297378TCONS_00009516-exon-sc0000095-1491911889:297079..297378Clytia hemisphaericaexon
TCONS_00009516-exon-sc0000095-1491911889:296464..296740TCONS_00009516-exon-sc0000095-1491911889:296464..296740Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009516-proteinTCONS_00009516-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095supercontigsc0000095:296464..298657 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.6021	13.981	28.2791	30.0944	19.2114	14.1593	17.1413	17.0367	19.5077	15.4417	16.0983	15.9953	13.0578	11.1639	13.6896	13.1885	15.4931	15.634	13.3478	14.6278	12.3169	11.8863	18.2711	15.9447	17.5502	17.807	9.82958	6.41451	10.7439	13.9411
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000488Death_domain
IPR013568SEFIR_dom
IPR011029DEATH-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009516 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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