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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009493 ID=TCONS_00009493|Name=TCONS_00009493|organism=Clytia hemisphaerica|type=transcript|length=2305bp TAATACTTGAATCAGAAATATTATTGCTGCCTCCTACAGCTGAATTGACG TCAATTGCATTCAAAAATCTTCCAGTTCCACTGTTTGAGTTCAAAATTTA ACTATAAATATTCCANAACGCTAAACAACGATGCCGGCACGCAAGTATCG GTGAAATTCCAAAAGAACTTGAAAATACGGGAAACATGAAACGAACTCAC AGTGAAGGAGATATGGACCCATTGAAGAGATTCGAATATTTGAGGAATGG CAAAGCAACCAGTGTTATGATTCGGGCTACACCGAACGCTGTCAGGTGGG ACGAAATCAATCGTATCCAATACCGCTTCCAAGCACTCAATTTTCACAGT GATgTACTTGATGCTTTGATTCAAAACTCACCACCACTTTCAAGACGAGA ACACAACGTTGCTTCCAACAAACcgaaaaacgaaaacgaaagtgataaaa acaataacaatattCCTTTAAATCGTCGCGATGACAACAATAATAACCAA AATGGTAGCCTTAGCAGCGACGACGAAGACGATGAAACAGATCTAATTGA CGCGACATCAACAAAAAAGAATGTCGAGAAAATCCGTAATACGCGCTCCG GTAAATTGCGTTCAATACGACGATCGAATTCGGCCGACGTTCGAAACGAA ATCGAACGAAAAGCCTCGGTAGTGCAAGTAGGACCGAAAGACGATACAAG TGACTATAATAGCGATGAAGAAGTATTTCAAACTCGCTCAGAAGGAGATA TAGACTTTAATACAACAATATGTCATGTTAAAACAGGTCAAATAAAAGAC ACAACACAAATTCATGTGCAGTCTTATAATACTACGACGAATAATATGGA CAATGATAATAAACCGTTTACTAAGAAAGACTTGAATCTACTAGCAGATC CTTCTACTTACGGAAAAGCGAGTCAACGACAAGCTTCATCTGCTCCAGCG TCTACGAAAATTTCCGTGGTTACACCAATAGAAAGCGTTTCAATCAACGA TCGATTTCGAAGTGAAATAACGAACCTTGGAGATACAACAAACGAGGATT TATCAGCTAAATCGAAAGAAGATCTTATCGAATTGGTCAAAAGTTTACAA AGGGAACTGGAAACGAGTAAACAACAACAATGCAATCACTCTTCACCACA GATGCTTTCTACGAGATCTTCGTGTAGTCGACAAGATTCTATCAGTGAAG AAATCAGCCCCGAGGAGGAAGCGGACGACGGGCGGTCAACGCCCGCTGTT TCAACGTtgattgaaaatttcgaaaaacgtgAGGGATTTAGGCTACAAAG GAGCAGTACTCTACCGTACAGGATTCGAAAAGCACCAAGTTGAACGCAAA CAAATATTCTGTATGTGATATCGAGGAACCGTTGAAAAGACGAAAGGTTA ATTACATTACGTTGAGCAAAAGgaatatgctgacgtcagctaTACAGACG ATACATGTATGTAACATAACCATGCTCTTTATGGATCTTGCCATGCATTG TGGCGGTACGCCCATTTATTCAAGCCACCAGCCAAACAGAGATCATCGCC CAATATCACCCTTTATATTCTCACCACGAGTATGCTGTTAAGGCATGAAA Gttggggacgagatggagtttttacaagctcttatttgatttggttggtc gttaaccagtaataaaacaattttgttactttttctaaagaacgcgtcat ttttattacttcaaatgaccaattattaaagtatcttataaaaactccat ttcATCTGGAAAGTTGAGCCGTTGCAATTGATGATTGACGTTAAATTCAA CGCTTGAAGAccaaataaaaactttacacagAAAGATCACACGTAAATGA GCTACTAGTTAGCCACTTGatttttttatccatttttggGAAAGGATTGA CATGGTTAGTTTGACAATGGAGACTTCTCAGATCTTTCTCTTTAGTCTCA AAATTTTGACATTCAATTTTATTCGATGTTATGTTCTAATTtgtaaaaaa caacatttttattcaagaaTACCTATAAccttttaatttgtttttcgaaa aaagCAATTTGTACATTCTACATTAGGTAATGAAATAATTATTAGCGAGT ACTATAAAACTTGTAAAATTTTAGTTGAGTTTTATATCTTAAAATTCTGA TTTGTAAAAtagttaattttcaaaaataatagcATAATCTTTTAATACCA ATTAAAAACCCATTAACGACCTATTGTAAAATATGAGAATATTCGGTTTT CTTTTTCTAGTATAGTAAAAtaataatacaaaaatatatcaaaatacaaa tttaa Run BLAST on NCBI transcript from alignment at sc0000095:490102..498152+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009493 ID=TCONS_00009493|Name=TCONS_00009493|organism=Clytia hemisphaerica|type=transcript|length=8051bp|location=Sequence derived from alignment at sc0000095:490102..498152+ (Clytia hemisphaerica) TAATACTTGAATCAGAAATATTATTGCTGCCTCCTACAGCTGAATTGACG
TCAATTGCATTCAAAAATCTTCCAGTTCCACTGTTTGAGTTCAAAATTTA
ACTATAAATATTCCANAACGCTAAACAACGATGCCGGCACGCAAGTATCG
GTGAAATTCCAAAAGAACTTGAAAATACGGGAAACATGAAACGAACTCAC
AGTGAAGGAGATATGGTAAGAATACGCATGCGCGataaaaatgttttact
tttcaagaattttgaggCTGTGTTTGGGATgcgtatttaaaaaaaagtta
tttgttttagCTGTATTCCCAAATGATACATAACGTCAAGGAAACGTcaa
tttaacgttcacaacattAAAAggtttcaaagatttttaaatctCGGGTT
TCGAATCTTCATGCTTTCCCAACTTGTACATAATGTCAAGCCACGGTCAA
GCTGAATTCTATCCAACCTTTAAGAGGACACTCTTGCAAAaatatgctga
atcagcaaaaaagtTTCATAATATCTAAGTTTCACATGTTTGTGTAGttt
gtattgatgttatgtttaCGTAATATCATTTCTGTCTTACTCAAGATGGC
GAAACTTTTTTCATGTACTTTCTATTTAAGTTTGTTTCAATATCTTGTTT
TTTATAACCATAATGTGAATCAAAATGTGAATTACTCTATACTTTACTCT
TTATTGGTTTCACCATATCTGTCTCTGTAATGCTAATATATCTTTTGGga
ctttgataattttttttgtaagaatatccAAATATCATATGTTAAATATC
GAGATGTAGTACTGACTTTTGATGACACAGACATGGCTTTTTTTGTCTTT
TGGCTTGAATAAAGCAAACAATTTTGACATATGATAGGCTAATAATGATT
TTCTTGTCATAATCATCCTCGTTTCCAGCTACCATGATAAGTATCTCCAA
GTCCTCTCCTTTTCGTGACATTTCGAAACACgaaatttagagggtttata
taACAGTTAGTCCAAAGCCTGTACCGCTAGCTCAGTCAAAGAGATTCGGG
AAAAGAACTCGAAATTAAACATTacaaaaaaatgacgtcacaactGAGTG
CtttgctcaaaaaattaaaCCAACTTAAAGATGACGTCACAGGGCGCCCT
ATCGATTATGATTTATCTGTTTTCCCCagttgtatttttttcttctcttt
tttccttggaaaagCCACATGGTGCTTGTATATGATTACTTGGAGTGATA
ACATAATTCTTttatactatcgtattacatCCGCtattatgaattttttt
cttgagtCCGCGCTATTGTAATGGCGtgtattttccttttctttcaaTAA
AGTTAAAGGCACTGCGCCTTTTGTAGTTATATGGTtgcttttaataattt
tctcagggggatatagaaaaaaaaatcttttatctcgacattttaaatat
tttaccGACGACCCTCTTATTCTACGACtgttcttttatgttttaacgcA
ACGGAACGAATTTAATTCTTGGACTTGGAAGTTATTTTGTGTTCTTTTTG
AGAGAGATTGTGTtagaaaaaccaaaatattttggtaaagGAGAATTTTG
GCTgtgttttttggaaatttacaaaCAAACAATGGTACAACTcaatttac
acttttttttaataagaaccagtaaatttttgttgaggctccGCTGCTCT
TattcttttttggtaatttgaGCCTCAtattgttcttatcttgtttTAGG
GCCAAGTTTAGGTAGTCTGACCTTACTNAAAATCTTCCAGTTCCACTGTT
TGAGTTCAAAATTTAACTATAAATATTCCATACCGGCTATCAATACGGCA
TGGTATGTGTTTTGTTTATCCCATACTCAGCATTTTTTGAACTATTAAAC
TAAAATCATTTTGCAATCTTTTCCCACATTGCGTCACCAGGATGTATTTC
GTGACGTCAAGAATAGTGTATCTAGCTAGGTTAGCATAAACTTGCAAAGG
ACATCACGCCGCGATTAGAATGCGCTCTAAAAATAGGCAAATATTTCGCA
ATGCTTgggaaaagaatttttatacCGTGAATAGAATCGTGTACTTACTA
ACATTCTATGCTATTTTAAGTACCTTttagtatgcttataaaagagaGGA
AAACTTATTTAGACTATGACTTAAGTGTATATAGGAATGTAACCGACTCC
CCGGCTAGGTTGACGTCATCACTAACAAAATTTATCGGTATTCGGAATAA
tcttagatatttttataaatattcACATACGATTAAAGCCCAAAACCCAC
AGAGGCTAAAGAAAGAACGGTTATATACATAAAGTAAATATAGAAACCCT
TTTCTTAAAGGAAAATTAGGCTCAATaattaatgttttattttatcgGCA
TGGAAACCTAATTGATTATTCAGTTATAACcttttgaattcattttattc
attGATTTTAAACATATATGTTTAGGTTAACCGCTTAAGATAAACGGTTT
CTAAGCGCTTttgatcaaagtttcttttctaatactaaattttttctata
agaacgaGAAAAATGCTTTAAATCGCTTGACGTTTGAGTTTTGGAGTAGT
AGAtctttaaactaaaatggctagGATTTTGGAGATAGTTGAGTTTATAT
GAGTTTTGTACATGGTATCCATTTGTGAAATTTTAACGTGAAGCAGCTTG
CCCTGTTGATAGCTTTATGAAATCAAACAAGTTTCTCGTAAAACAAATGC
TGATGGTTGCATATTCTTATATAATcattgtttataagaacatttctcGA
ATACTTTTAAATATTATGTTTCTAAGCTAGCCGCTGTGAAGTGAACGCAA
AAGTTGAATAGCCTCTGACGTCAAACTGTCTTTCACGTGAATGAATATGA
TGGAAATTCCCTGGTTTTtcaataacacagcaaaaagaTTGTATATAAAA
ACTCTGAAGGAAAAGAAATAGGACATTACTAAATCAGTCTATGAAAAACC
AACACACGATTGACATTGATGACAAGAAGTTTTTTGATAAAGACAAGCTC
TTTGACTtccaataaattttatttggaaatttagACCAGAGGGTCGTTTT
TATATAGCTTTACTAAAATTTTGACTAAGTCTTTGTGAAAATGGCAATCG
AGAGGTTTCTAGAAATGAACGCTAAACAACGATGCCGGCACGCAAGTATC
GGTGAAATTCCAAAAGAACTTGAAAATACGGGAAACATGAAACGAACTCA
CAGTGAAGGAGATATGGTAAGAGTACGCATGCGCGataaaaatgttttac
ttttcaagaattttgaggCTGTGTTTGGGATgcgtatttaaaaaaaagtt
atttgttttagCTGTATTCCCAAATGATACATAACGTCAAGGAAACGTca
atttaacgttcacaacattAAAAggtttcaaagatttttaaatctCGGGT
TTCGAATCTTCATGCTTTCCCAACTTGTACATAATGTCAAGCCACGGTCA
AGCTGAATTCTATCCAACCTTTAAGAGGACACTCTTGCAAAaatatgctg
aatcagcaaaaaagtTTCATAATATCTAAGTTTCACATGTTTGTGTAGtt
tgtattgatgttatgtttaCGTAATATCATTTCTGTCTTACTCAAGATGG
CGAAACTTTTTTCATGTACTTTCTATTTAAGTTTGTTTCAATATCTTGTT
TTTTATAACCATAATGTGAATCAAAATGTGAATTACTCTATACTTTACTC
TTTATTGGTTTCACCATATCTGTCTCTGTAATGCTAATATATCTTTTGGg
actttgataattttttttgtaagaatatccAAATATCATATGTTAAATAT
CGAGATGTAGTACTGACTTTTGATGACACAGACATGGCTTTTTTTGTCTT
TTGGCTTGAATAAAGCAAACAATTTTGACATATGATAGGCTAATAATGAT
TTTCTTGTCATAATCATCCTCGTTTCCAGCTACCATGATAAGTATCTCCA
AGTCCTCTCCTTTTCGTGACATTTCGAAACACgaaatttagagggtttat
ataACAGTTAGTCCAAAGCCTGTACCGCTAGCTCAGTCAAAGAGATTCGG
GAAAAGAACTCGAAATTAAACATTacaaaaaaatgacgtcacaactGAGT
GCtttgctcaaaaaattaaaCCAACTTAAAGATGACGTCACAGGGCGCCC
TATCGATTATGATTTATCTGTTTTCCCCagttgtatttttttcttctctt
ttttccttggaaaagCCACATGGTGCTTGTATATGATTACTTGGAGTGAT
AACATAATTCTTttatactatcgtattacatCCGCtattatgaatttttt
tcttgagtCCGCGCTATTGTAATGGCGtgtattttccttttctttcaaTA
AAGTTAAAGGCACTGCGCCTTTTGTAGTTATATGGTtgcttttaataatt
ttctcagggggatatagaaaaaaaaatcttttatctcgacattttaaata
ttttaccGACGACCCTCTTATTCTACGACtgttcttttatgttttaacgc
AACGGAACGAATTTAATTCTTGGACTTGGAAGTTATTTTGTGTTCTTTTT
GAGAGAGATTGTGTtagaaaaaccaaaatattttggtaaagGAGAATTTT
GGCTgtgttttttggaaatttacaaaCAAACAATGGTACAACTcaattta
cacttttttttaataagaaccagtaaatttttgttgaggctccGCTGCTC
TTattcttttttggtaatttgaGCCTCAtattgttcttatcttgtttTAG
GGCCAAGTTTAGGTAGTCTGACCTTACTTTGACGCGTCCTCTACTAGAAA
TTCAGCATTTCCAACTTAAGCAttattattcttaaattgttcttattttt
cgatgattatgatcttcatcgttCTCATAGAAGAAAAAGAGTTCGCCCAT
AATTTAGCTTACGTATCGGTTTCTGTTTTCAAACCTACACGCTTGAAACA
TGGTGTAAACAATAGTTTTaacatgaagaaattttcaaatataacATAGA
TAAAAGGATATAGTTTTATAGTTCCTTTTCCTTATTagttttccaaatat
ttgaagtcaaaagacgtcaaaaaaatttggaagcAGAACTTTTTTCTATG
AAAGAACGGAAAAAAAACTACTGTAGACATATAGGTCACAGAGGGTTATG
TTTAAGGAAAAACACTCaagaaaaatgatcaaaaacaaGAGTTTAATCGA
CCTTGTTATTTCTTCTTCTCATGTTCAGGACCCATTGAAGAGATTCGAAT
ATTTGAGGAATGGCAAAGCAACCAGTGTTATGATTCGGGCTACACCGAAC
GCTGTCAGGTGGGACGAAATCAATCGTATCCAATACCGCTTCCAAGCACT
CAATTTTCACAGTGATggtatgtaattttttttcaacttcgttcttaact
tattcttatgAGTTATTGACATTTCTACAAAAACGCGCTAAATTACTTTA
TCGGTAGAAAAATTGCCGGCCTTGAAAATTTGTCTGTAAAAAAATCGTCA
TCAAGCGactttttcgtcactttttgccGACTAAATGAGCATTGATTTAT
TATTATATGTATTAATTTTCTGCTATTATTTTCTCTCTTTAGTACTTGAT
GCTTTGATTCAAAACTCACCACCACTTTCAAGACGAGAACACAACGTTGC
TTCCAACAAACcgaaaaacgaaaacgaaagtgataaaaacaataacaata
ttCCTTTAAATCGTCGCGATGACAACAATAATAACCAAAATGGTAGCCTT
AGCAGCGACGACGAAGACGATGAAACAGATCTAATTGACGCGACATCAAC
AAAAAAGAATGTCGAGAAAATCCGTAATACGCGCTCCGGTAAATTGCGTT
CAATACGACGATCGAATTCGGCCGACGTTCGAAACGAAATCGAACGAAAA
GCCTCGGTAGTGCAAGTAGGACCGAAAGACGATACAAGTGACTATAATAG
CGATGAAGAAGTATTTCAAACTCGCTCAGAAGGAGATATAGACTTTAATA
CAACAATATGTCATGTTAAAACAGGTCAAATAAAAGACACAACACAAATT
CATGTGCAGTCTTATAATACTACGACGAATAATATGGACAATGATAATAA
ACCGTTTACTAAGAAAGACTTGAATCTACTAGCAGATCCTTCTACTTACG
GAAAAGCGAGTCAACGACAAGCTTCATCTGCTCCAGCGTCTACGAAAATT
TCCGTGGTTACACCAATAGAAAGCGTTTCAATCAACGATCGATTTCGAAG
TGAAATAACGAACCTTGGAGATACAACAAACGAGGATTTATCAGCTAAAT
CGGTacgtttttgttttgacttcCATATAATTCTTGAAGCTTTTTTGGTT
TTAAGGGTCTTTACAATACTACAATTTTTCATTCACAATATTACTACATG
TAATCCTTCCTCCCGGAATGTTTTGTTTTCTAACTGCAGAATATCTCGAA
TATCTTTTTTATGGGCTTAATATAAAGTTTATAATTTTAACTTAACTTTC
TAATTCTTATCATCAAAACAGAAAGAAGATCTTATCGAATTGGTCAAAAG
TTTACAAAGGGAACTGGAAACGAGTAAACAACAACAATGCAATCACTCTT
CACCACAGATGCTTTCTACGAGATCTTCGTGTAGTCGACAAGATTCTATC
AGTGAAGAAATCAGCCCCGAGGAGGAAGCGGACGACGGGCGGTCAACGCC
CGCTGTTTCAACGTtgattgaaaatttcgaaaaacgtgAGGGATTTAGGC
TACAAAGGAGCAGTACTCTACCGTACAGGGTAGGTTATATATTGAATTAT
CTTTGATCCAAATGTCATTGGAAGCGTTCAGAATTTAAGGTTCGGCTCCG
CTGTAAAACATCGAGAACTAGTTCTCTTAGGGGACCTAAAAGACGCTCAT
CTTATTACTCACTAGTTCTTTTAAAAGTCATATCTTGACAACAACAGGct
tataattttgaaattttgctcgGAAAAGTTCTTCTGGGATttgatatgtt
ttttttcttcatttctagATTCGAAAAGCACCAAGTTGAACGCAAACAAA
TATTCTGTATGTGATATCGAGGAACCGTTGAAAAGACGAAAGGTTAATTA
CATTACGTTGAGCAAAAGgaatatgctgacgtcagctaTACAGACGATAC
ATGTATGTAACATAACCATGCTCTTTATGGATCTTGCCATGCATTGTGGC
GGTACGCCCATTTATTCAAGCCACCAGCCAAACAGAGATCATCGCCCAAT
ATCACCCTTTATATTCTCACCACGAGTATGCTGTTAAGGCATGAAAGttg
gggacgagatggagtttttacaagctcttatttgatttggttggtcgtta
accagtaataaaacaattttgttactttttctaaagaacgcgtcattttt
attacttcaaatgaccaattattaaagtatcttataaaaactccatttcA
TCTGGAAAGTTGAGCCGTTGCAATTGATGATTGACGTTAAATTCAACGCT
TGAAGAccaaataaaaactttacacagAAAGATCACACGTAAATGAGCTA
CTAGTTAGCCACTTGatttttttatccatttttggGAAAGGATTGACATG
GTTAGTTTGACAATGGAGACTTCTCAGATCTTTCTCTTTAGTCTCAAAAT
TTTGACATTCAATTTTATTCGATGTTATGTTCTAATTtgtaaaaaacaac
atttttattcaagaaTACCTATAAccttttaatttgtttttcgaaaaaag
CAATTTGTACATTCTACATTAGGTAATGAAATAATTATTAGCGAGTACTA
TAAAACTTGTAAAATTTTAGTTGAGTTTTATATCTTAAAATTCTGATTTG
TAAAAtagttaattttcaaaaataatagcATAATCTTTTAATACCAATTA
AAAACCCATTAACGACCTATTGTAAAATATGAGAATATTCGGTTTTCTTT
TTCTAGTATAGTAAAAtaataatacaaaaatatatcaaaatacaaattta
a
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00009493-exon-sc0000095-1491911889:490102..490316 | TCONS_00009493-exon-sc0000095-1491911889:490102..490316 | Clytia hemisphaerica | exon |
TCONS_00009493-exon-sc0000095-1510915933:490102..490316 | TCONS_00009493-exon-sc0000095-1510915933:490102..490316 | Clytia hemisphaerica | exon |
TCONS_00009493-exon-sc0000095-1575043694:490102..490316 | TCONS_00009493-exon-sc0000095-1575043694:490102..490316 | Clytia hemisphaerica | exon |
TCONS_00009493-exon-sc0000095-1491911889:495380..495518 | TCONS_00009493-exon-sc0000095-1491911889:495380..495518 | Clytia hemisphaerica | exon |
TCONS_00009493-exon-sc0000095-1510915933:495380..495518 | TCONS_00009493-exon-sc0000095-1510915933:495380..495518 | Clytia hemisphaerica | exon |
TCONS_00009493-exon-sc0000095-1575043694:495380..495518 | TCONS_00009493-exon-sc0000095-1575043694:495380..495518 | Clytia hemisphaerica | exon |
TCONS_00009493-exon-sc0000095-1491911889:495744..496453 | TCONS_00009493-exon-sc0000095-1491911889:495744..496453 | Clytia hemisphaerica | exon |
TCONS_00009493-exon-sc0000095-1510915933:495744..496453 | TCONS_00009493-exon-sc0000095-1510915933:495744..496453 | Clytia hemisphaerica | exon |
TCONS_00009493-exon-sc0000095-1575043694:495744..496453 | TCONS_00009493-exon-sc0000095-1575043694:495744..496453 | Clytia hemisphaerica | exon |
TCONS_00009493-exon-sc0000095-1491911889:496673..496930 | TCONS_00009493-exon-sc0000095-1491911889:496673..496930 | Clytia hemisphaerica | exon |
TCONS_00009493-exon-sc0000095-1510915933:496673..496930 | TCONS_00009493-exon-sc0000095-1510915933:496673..496930 | Clytia hemisphaerica | exon |
TCONS_00009493-exon-sc0000095-1575043694:496673..496930 | TCONS_00009493-exon-sc0000095-1575043694:496673..496930 | Clytia hemisphaerica | exon |
TCONS_00009493-exon-sc0000095-1491911889:497170..498152 | TCONS_00009493-exon-sc0000095-1491911889:497170..498152 | Clytia hemisphaerica | exon |
TCONS_00009493-exon-sc0000095-1510915933:497170..498152 | TCONS_00009493-exon-sc0000095-1510915933:497170..498152 | Clytia hemisphaerica | exon |
TCONS_00009493-exon-sc0000095-1575043694:497170..498152 | TCONS_00009493-exon-sc0000095-1575043694:497170..498152 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000095 | supercontig | sc0000095:490102..498152 + |
Blast
The following BLAST results are available for this feature:
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