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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009456 ID=TCONS_00009456|Name=TCONS_00009456|organism=Clytia hemisphaerica|type=transcript|length=3972bpRun BLAST on NCBI transcript from alignment at sc0000095:139054..152314+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009456 ID=TCONS_00009456|Name=TCONS_00009456|organism=Clytia hemisphaerica|type=transcript|length=13261bp|location=Sequence derived from alignment at sc0000095:139054..152314+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00009456 vs. Swiss-Prot (Human)
Match: PI4KB (Phosphatidylinositol 4-kinase beta OS=Homo sapiens GN=PI4KB PE=1 SV=1) HSP 1 Score: 640.958 bits (1652), Expect = 0.000e+0 Identity = 362/750 (48.27%), Postives = 495/750 (66.00%), Query Frame = 3
Query: 540 SWLLRLFESKLFDMPIAISYMFNSKECGVLAYLGNKLFSFTDQEVDVYLPELIHMYLHMEE-VADYIFPYLSLRAKNHTIFSLRSSWILDSELNLGELEPEEIKRGKKLRQVITEEQTK-VHRPKLITTQQTPA-------SKKSHKRSKSEALIGTITDRASFHNPLPVTHSQSTDNIGQENFKMGLAFGKCPQHLLSGGVRLDPAVAMQKASSSNDLKDLATDTTEEDLSQCCCWQVPLYVA-EQEFVKALMDIGQRMKGLQTKQQKVQRLCAEXXXXXXXXPAKVFVPFDDMFPHHVVRIPHNAAVVLNSKEKAPYIIYIEVLAHDVEEDLELQEQYHENLLADHYRSMNGNDDTVLSTPFDRTKFEDGLGSFDC--GYSPESSEYD----GTLSVGDDXXXXXXXXXXXXXXXXXXXXXXXXXXMYISAIDVRMRLKDSVS-TPKAQFMVRDPDDPSAAALKEPWTEKVQRIRRMSPYGHLPNWRLIPAIVKTGDDLRQECLAYQLLRQFQAIFQQERVPLWIRPYAVLVSSSDGGLVEPIVNAISVHQIKKQSKMSLRDYFINEFGEPTTEEFLTAQRNFVESCAGYCLLCYIMQVKDRHNNNILVDADGHIIHIDFGFILSTSPGKNLGFENSPFKLTDEFVDVMDGPDSDMYNYFKILILQGFVAARKNMDRVLQVVEIFKTGSQLPCFQQGVSTIELMRERFHMNLTEDQLARHVTKLIDDSVQSLTTRLYDSFQYFTNGIL 2738
SWLLRLFESKLFD+ +AISY++NSKE GV AY+GN+LF F +++VD YLP+L++MY+HM+E V D I PY+ R + FSL+ + +L + + + + RG KLR++I ++ K HR + + + +PA SK++H+RSKS+A T S + L T S +P V N+ ++L++ T D S + P+ +A E+EF+K+LM IG+R+ L TK+QK QRL +ELSLLN LPA+V++P F HHVVR+PH AVVLNSK+KAPY+IY+EVL + + + + EN + RS +V + P E GSF Y + + G L V T + + + ++ ++I+A D+R RL + ++ TP A RDP+DPSA ALKEPW EKV+RIR SPYGHLPNWRL+ IVK GDDLRQE LA+Q+L+Q Q+I++QERVPLWI+PY +LV S+D G++EP+VNA+S+HQ+KKQS++SL DYF+ E G TTE FL+AQRNFV+SCAGYCL+CY++QVKDRHN NIL+DA+GHIIHIDFGFILS+SP +NLGFE S FKLT EFVDVM G D DM+NY+K+L+LQG +AARK+MD+V+Q+VEI + GSQLPCF G STI ++ERFHM++TE+QL V +++D S++S+TT+LYD FQY TNGI+
Sbjct: 128 SWLLRLFESKLFDISMAISYLYNSKEPGVQAYIGNRLFCFRNEDVDFYLPQLLNMYIHMDEDVGDAIKPYIVHRCRQSINFSLQCALLLGAYSSDMHISTQRHSRGTKLRKLILSDELKPAHRKRELPSL-SPAPDTGLSPSKRTHQRSKSDA-----TASISLSSNLKRTAS-------------------------------NPKV-------ENEDEELSSSTESIDNS----FSSPVRLAPEREFIKSLMAIGKRLATLPTKEQKTQRLISELSLLNHKLPARVWLPTAG-FDHHVVRVPHTQAVVLNSKDKAPYLIYVEVLECENFDTTSVPARIPENRI----RSTR----SVENLPECGITHEQRAGSFSTVPNYDNDDEAWSVDDIGELQVELPEVHTNSCDNISQFSVDSITSQESKEPVFIAAGDIRRRLSEQLAHTPTA--FKRDPEDPSAVALKEPWQEKVRRIREGSPYGHLPNWRLLSVIVKCGDDLRQELLAFQVLKQLQSIWEQERVPLWIKPYKILVISADSGMIEPVVNAVSIHQVKKQSQLSLLDYFLQEHGSYTTEAFLSAQRNFVQSCAGYCLVCYLLQVKDRHNGNILLDAEGHIIHIDFGFILSSSP-RNLGFETSAFKLTTEFVDVMGGLDGDMFNYYKMLMLQGLIAARKHMDKVVQIVEIMQQGSQLPCF-HGSSTIRNLKERFHMSMTEEQLQLLVEQMVDGSMRSITTKLYDGFQYLTNGIM 816 The following BLAST results are available for this feature:
BLAST of TCONS_00009456 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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