TCONS_00009425 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009425
Unique NameTCONS_00009425
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length441

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009425 ID=TCONS_00009425|Name=TCONS_00009425|organism=Clytia hemisphaerica|type=transcript|length=441bp
GCTAAGACTAAGGCTATAGTACTTAATAAGAAAagtgatatgaaaaatga
attaatgtgctaagtaaaattttttattgatatacaaaataaaataaaat
aaaactcctTCCTAGTATAAAGTAAACCTCAGAAATAATGCAAGAGATTA
GTAGATGCTAAGCAGGAATGAATGAATTAATGGCACAAAGATTGTTCTAG
AAGAAGGTGCTAAGACTTGGCACAAAGATTGTTCTAGGGTAAGGTGCTAA
GACTTGAAAGTGGAAGTAAAGATTCATTGTAAGGCTATAGCTGTAAAAAT
ATATAGTTAGGATAAATGAGATTTAAATATGTTTTAGAAGTTCGTCAGAA
AATGTTGTTAAGTTATCATTCATGGTCACTTCATTTGGAAGTTCGTTCCA
CCAGTCAATGGTGGTAGGGATAAAAGAGTTGGAATACGCCA
Run BLAST on NCBI

transcript from alignment at sc0000093:220913..221353

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009425 ID=TCONS_00009425|Name=TCONS_00009425|organism=Clytia hemisphaerica|type=transcript|length=441bp|location=Sequence derived from alignment at sc0000093:220913..221353 (Clytia hemisphaerica)
TGGCGTATTCCAACTCTTTTATCCCTACCACCATTGACTGGTGGAACGAA
CTTCCAAATGAAGTGACCATGAATGATAACTTAACAACATTTTCTGACGA
ACTTCTAAAACATATTTAAATCTCATTTATCCTAACTATATATTTTTACA
GCTATAGCCTTACAATGAATCTTTACTTCCACTTTCAAGTCTTAGCACCT
TACCCTAGAACAATCTTTGTGCCAAGTCTTAGCACCTTCTTCTAGAACAA
TCTTTGTGCCATTAATTCATTCATTCCTGCTTAGCATCTACTAATCTCTT
GCATTATTTCTGAGGTTTACTTTATACTAGGAaggagttttattttattt
tattttgtatatcaataaaaaattttacttagcacattaattcatttttc
atatcactTTTCTTATTAAGTACTATAGCCTTAGTCTTAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005281XLOC_005281Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009425-exon-sc0000093-1491911889:220913..221353TCONS_00009425-exon-sc0000093-1491911889:220913..221353Clytia hemisphaericaexon
TCONS_00009425-exon-sc0000093-1510915933:220913..221353TCONS_00009425-exon-sc0000093-1510915933:220913..221353Clytia hemisphaericaexon
TCONS_00009425-exon-sc0000093-1575043694:220913..221353TCONS_00009425-exon-sc0000093-1575043694:220913..221353Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093supercontigsc0000093:220913..221353 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.530514	17.7761	8.98049	3.44726	5.07545	2.34226	1.66043	0.56149	1.56862	0.216326	0.0867882	0	0	0.475765	0	0	0	2.76592	1.99501	0.879145	2.62159	0	3.07252	0.821495	0.828517	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009425 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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