TCONS_00009417 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009417
Unique NameTCONS_00009417
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length777

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009417 ID=TCONS_00009417|Name=TCONS_00009417|organism=Clytia hemisphaerica|type=transcript|length=777bp
AATTAAGTCCTAAAAACCATTTTAAAGGTCCTGAGATTTTAATACTGATC
ACTGTTAAAAGTTACAAAATCATGATGCATGAAATCTatatggtaaaaaa
attatgttctgataaaaatatatgttgatgaaataaaaaagtactGGAAA
CATATCGATCAAATCTTGAATGGTAAAAGGCTTGAGAGATATCTAATGTT
AaggaactgaaaaaaaaattaaataaggaTAACGACATCTTAAGAGCTAT
TGGGCTAAAATTCCCAACATTATTGCTTTGAAAATTGTTGCACTTGCTGT
CCTCTTTCCAACAGAATTGATTGTTCCCAATTGGATCCATCAAAATCAAT
CACTTTCACTTCTTTCAAAGTATCTCCGTCAATACAATGAGGCATAACAC
CAACACCATCCGGATTTGATCTTGGTGTATAAAAACTCTGGACACCGCAT
ACTTTACAGAAAGTGTGTTTCGCCATGTGCGTATTGAAAGTGTATGTTGT
AATGAAATCTGCACCTTCCAGTAAACGGAATTTGGACCGTGGTACAATGA
AATGGTGATTCTGTTTTTTGTTACAAATACTACAGTTGCATGTGACACAT
GTTATTTTCTCAGGTGCTTCCACTTCAAACCTGATTTTACCACAATGACA
GCTCCCCTTGTGGAGGACTGCTGTTGTTTCATTTGTTGTCATATTATTGT
tttgttgtcaatttttttgctgaaatgaaaaaacatcaaaaacatcaaaa
tttaaatgaaaGGAAAACATGTTTTAT
Run BLAST on NCBI

protein sequence of TCONS_00009417-protein

>TCONS_00009417-protein ID=TCONS_00009417-protein|Name=TCONS_00009417-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MTTNETTAVLHKGSCHCGKIRFEVEAPEKITCVTCNCSICNKKQNHHFIV
PRSKFRLLEGADFITTYTFNTHMAKHTFCKVCGVQSFYTPRSNPDGVGVM
PHCIDGDTLKEVKVIDFDGSNWEQSILLERGQQVQQFSKQ
Run BLAST on NCBI

transcript from alignment at sc0000093:62221..62997

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009417 ID=TCONS_00009417|Name=TCONS_00009417|organism=Clytia hemisphaerica|type=transcript|length=777bp|location=Sequence derived from alignment at sc0000093:62221..62997 (Clytia hemisphaerica)
ATAAAACATGTTTTCCtttcatttaaattttgatgtttttgatgtttttt
catttcagcaaaaaaattgacaacaaaACAATAATATGACAACAAATGAA
ACAACAGCAGTCCTCCACAAGGGGAGCTGTCATTGTGGTAAAATCAGGTT
TGAAGTGGAAGCACCTGAGAAAATAACATGTGTCACATGCAACTGTAGTA
TTTGTAACAAAAAACAGAATCACCATTTCATTGTACCACGGTCCAAATTC
CGTTTACTGGAAGGTGCAGATTTCATTACAACATACACTTTCAATACGCA
CATGGCGAAACACACTTTCTGTAAAGTATGCGGTGTCCAGAGTTTTTATA
CACCAAGATCAAATCCGGATGGTGTTGGTGTTATGCCTCATTGTATTGAC
GGAGATACTTTGAAAGAAGTGAAAGTGATTGATTTTGATGGATCCAATTG
GGAACAATCAATTCTGTTGGAAAGAGGACAGCAAGTGCAACAATTTTCAA
AGCAATAATGTTGGGAATTTTAGCCCAATAGCTCTTAAGATGTCGTTAtc
cttatttaatttttttttcagttcctTAACATTAGATATCTCTCAAGCCT
TTTACCATTCAAGATTTGATCGATATGTTTCCagtacttttttatttcat
caacatatatttttatcagaacataatttttttaccatatAGATTTCATG
CATCATGATTTTGTAACTTTTAACAGTGATCAGTATTAAAATCTCAGGAC
CTTTAAAATGGTTTTTAGGACTTAATT

Coding sequence (CDS) from alignment at sc0000093:62221..62997

>TCONS_00009417 ID=TCONS_00009417|Name=TCONS_00009417|organism=Clytia hemisphaerica|type=CDS|length=423bp|location=Sequence derived from alignment at sc0000093:62221..62997 (Clytia hemisphaerica)
ATGACAACAAATGAAACAACAGCAGTCCTCCACAAGGGGAGCTGTCATTG
TGGTAAAATCAGGTTTGAAGTGGAAGCACCTGAGAAAATAACATGTGTCA
CATGCAACTGTAGTATTTGTAACAAAAAACAGAATCACCATTTCATTGTA
CCACGGTCCAAATTCCGTTTACTGGAAGGTGCAGATTTCATTACAACATA
CACTTTCAATACGCACATGGCGAAACACACTTTCTGTAAAGTATGCGGTG
TCCAGAGTTTTTATACACCAAGATCAAATCCGGATGGTGTTGGTGTTATG
CCTCATTGTATTGACGGAGATACTTTGAAAGAAGTGAAAGTGATTGATTT
TGATGGATCCAATTGGGAACAATCAATTCTGTTGGAAAGAGGACAGCAAG
TGCAACAATTTTCAAAGCAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005274XLOC_005274Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009417-proteinTCONS_00009417-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009417-exon-sc0000093-1491911889:62221..62997TCONS_00009417-exon-sc0000093-1491911889:62221..62997Clytia hemisphaericaexon
TCONS_00009417-exon-sc0000093-1510915933:62221..62997TCONS_00009417-exon-sc0000093-1510915933:62221..62997Clytia hemisphaericaexon
TCONS_00009417-exon-sc0000093-1575043694:62221..62997TCONS_00009417-exon-sc0000093-1575043694:62221..62997Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093supercontigsc0000093:62221..62997 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
47.1579	50.0673	25.3182	21.2413	36.2197	28.4882	26.0986	30.5978	28.8964	22.4927	18.4781	16.265	15.0377	11.6048	16.3504	16.3666	14.6294	15.1869	8.83083	10.4915	7.54883	7.15792	34.5191	31.9037	6.7732	15.2021	6.6804	7.86074	13.8653	15.2567
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006913GFA/CENP-V
IPR011057Mss4-like
Vocabulary: Molecular Function
TermDefinition
GO:0016846carbon-sulfur lyase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0016846 carbon-sulfur lyase activity
Blast
[Close]
BLAST of TCONS_00009417 vs. Swiss-Prot (Human)
Match: CENPV (Centromere protein V OS=Homo sapiens GN=CENPV PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.303e-50
Identity = 73/118 (61.86%), Postives = 91/118 (77.12%), Query Frame = -2 
Query:  315 VLHKGSCHCGKIRFEVEAPEKITCVTCNCSICNKKQNHHFIVPRSKFRLLEGADFITTYTFNTHMAKHTFCKVCGVQSFYTPRSNPDGVGVMPHCIDGDTLKEVKVIDFDGSNWEQSI 668
            V H G CHCG +RFEV A   +    CNCSIC KKQN HFIVP S+F+LL+GA+ ITTYTFNTH A+HTFCK CGVQSFYTPRSNP G G+ PHC+D  T++ +   +F+GS+WE+++
Sbjct:  146 VKHTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLLKGAEHITTYTFNTHKAQHTFCKRCGVQSFYTPRSNPGGFGIAPHCLDEGTVRSMVTEEFNGSDWEKAM 263
The following BLAST results are available for this feature:
BLAST of TCONS_00009417 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CENPV1.303e-5061.86Centromere protein V OS=Homo sapiens GN=CENPV PE=1... [more]
back to top