TCONS_00009411 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009411
Unique NameTCONS_00009411
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009411 ID=TCONS_00009411|Name=TCONS_00009411|organism=Clytia hemisphaerica|type=transcript|length=2326bp
TTTCTTGCAAGACGCGCTCTGATTGGTCTAAACAGTAGCCTGTCTTTATA
TTACTCAACATCTTGTAAAAAAGTTCAGTAGTCATTTCAGCAAGTACAAA
CAAACATGAGCTCAGAGacaagaaaacagaaaaataatgCAACAACACTT
TTGATCAAACATGACTTAGAACGGTCGATAGGCTTGTATgagatgaaata
aaattttcggGTATTACAAAATTGAGAAATGGATCTGTTAATGTCACATG
TAATTTTTCTTGTGTGAGGAATATACTAACAAACTCAACAGCTAATTTAC
AATTTCCTTCTTATTGAAAGAGTTGTCAAGTTTTGTGTCAAGTTATCGAA
ACTCAGAACATTTCAGTATTTCAGAAACATAGTCTGAATTATTCGGCAGT
AAATAGAATGTTCCCAGGTTTtcctaatacaataatgaccggttagtgag
ggctgtactgagaaatattgcccgaggtcaagtaacgaccgagcttgcga
ggttgttacgttgaccgagggcaatattttcagtacagcccgaaaaaaac
cggccattattgtatttgttaaccgtttccttcagctttgatggattttt
agcgctttatccaggaagaatagcgaaataaagcagaaaaaacaagcgaa
aagagataaaaaattgctataatttctgacgtccgaaataaaaaatgaga
gaaatgatgtcaacgcattgttcattttcctttgaaaaagtgacgtcaca
atgaattttcctaacgacgggcaactctggacaatgtagggctctcgtca
tgcgaaaagaaccaattgcattgcgcaaaaagtcgtgtagcccgcttcga
aaaagtaaccggttaacaatttCTTGAATTCAATGGTTGGATACAGCTAC
TCTAGGGGTCATTAATCTGAAGTTTGGGATTCAGGAGGGCATTTACTCAA
TGAATACTCGACTGTTTTGTCAGAAACCTCTATACTAAGGAGCAGCAGAT
CTGAGGTGGTACAAAACTTTACGACGGATAGTTTCGGTTAACCATTTTCT
TTTGAGGGAATGAAAACTctgtaataaattttttatggtcaaaTGTAAAT
ATTCTCTTTaatatttagaaaatcaaaataaaacatcataAAATGAAGCC
ACAAACTCCACCATATAAGATCATCGAGGCTGTTGGTTTAGTTTTCATCA
TTTTGGGTCTGTTTACATGTGTAACGTTTTTGTTCCATTCAGACTATGCT
TATTTCGGACCAGCAATGATCGGTCTTGGTATTTGCCTAATGTGTGGAGG
GCGTTATATGTATTATCGTTTATATAGCAAGCTGGAGAATAGTTATGACC
GCCATGTTGACGACGTAGAGGCTCCTGTTAGCTCTGAGGAACAACAACAA
AGAACTTCAATAAATTCTCAAAATGTGTCTGTAGCCTACAGTACGAATGG
TGGATACGCAGCATCGCAACAAGatgtTAGAGAGGGATCAAATGTGATTT
AGAAGTAGAATGCCACCCACAGATGTAAACTTCCTGCGAAAGGCTTGACC
GTGTTGTCATTTGCAATTTTGTCCAAAGTTAAGTCTGTTTTAAGACTTTG
ATTGGTTGGAATGTACTAGTTATCCAGGCAGGCACACGACGCGGCAATTC
AAAGTTCTACTCACGTTATATGGATATTATAGTCGCGACATGGATGTTGT
taagatgttttgttttgtcttGGTTGCCCTCGGAAAGACTCAGTAATTTT
TGGATACCTATAATAGATAGAAAACACCAAACACCCCGGAGCTATTCCCT
GATAATTGATATTTGTTCGATTTTAGTAATTTCTCGTTTCAAAAACTAAA
ACGTTCATTTTAAAACCATCAACAATTAGGTTTCGTAAGAGCGGTAATGA
TACACATTTTTGCCAAAAACTATATTCGCCATAAAAAGTTAAATGTTTAA
AGGacatttttgctaaatttgtaTCATAATTTTCAATACTTTGACAGAGC
CTTCGCTAGGGCGACTTTGTTTTAAATTCACAGAATTAAAGTGTTCCAAA
ACCTTGGGCATAAATGTTAAGCTTACTCCTAAAGTAAAGGTGTTTTTATA
TAGGACATTTCTTGGGATGGGGGTCAAGTATTTTATAcatagtaattttt
tttaaatgacaacTATGAAATTTTAGAGACGTAGAAATatgaattaattt
caaaatagaataaaaatgaaaataaaaataaaattagttaCATACCTGTT
ATTTTTCCTTacttttcttgtttttgttcttcATGTAACACGACCATTAT
TCATTTCCATTTTATTGTCAACTAAT
Run BLAST on NCBI

protein sequence of TCONS_00009411-protein

>TCONS_00009411-protein ID=TCONS_00009411-protein|Name=TCONS_00009411-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MKPQTPPYKIIEAVGLVFIILGLFTCVTFLFHSDYAYFGPAMIGLGICLM
CGGRYMYYRLYSKLENSYDRHVDDVEAPVSSEEQQQRTSINSQNVSVAYS
TNGGYAASQQDVREGSNVI
Run BLAST on NCBI

transcript from alignment at sc0000093:460301..464802-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009411 ID=TCONS_00009411|Name=TCONS_00009411|organism=Clytia hemisphaerica|type=transcript|length=4502bp|location=Sequence derived from alignment at sc0000093:460301..464802- (Clytia hemisphaerica)
TTTCTTGCAAGACGCGCTCTGATTGGTCTAAACAGTAGCCTGTCTTTATA
TTACTCAACATCTTGTAAAAAAGTTCAGTAGTCATTTCAGCAAGTACAAA
CAAACATGAGCTCAGAGACAAGAAAACAGAAAAATAATGCAACAACACTT
TTGATCAAACATGACTTAGAACGGTCGATAGGCTTGTATGAGATGAAATA
AAATTTTCGGGTATTACAAAATTGAGAAATGGATCTGTTAATGTCACATG
TAATTTTTCTTGTGTGAGGAATATACTAACAAACTCAACAGCTAATTTAC
AATTTCCTTCTTATTGAAAGAGTTGTCAAGTTTTGTGTCAAGTTATCGAA
ACTCAGAACATTTCAGTATTTCAGAAACATAGTCTGAATTATTCGGCAGT
AAATAGAATGTTCCCAGGTTTTCCTAATACAATAATGACCGGTTAGTGAG
GGCTGTACTGAGAAATATTGCCCGAGGTCAAGTAACGACCGAGCTTGCGA
GGTTGTTACGTTGACCGAGGGCAATATTTTCAGTACAGCCCGAAAAAAAC
CGGCCATTATTGTATTTGTTAACCGTTTCCTTCAGCTTTGATGGATTTTT
AGCGCTTTATCCAGGAAGAATAGCGAAATAAAGCAGAAAAAACAAGCGAA
AAGAGATAAAAAATTGCTATAATTTCTGACGTCCGAAATAAAAAATGAGA
GAAATGATGTCAACGCATTGTTCATTTTCCTTTGAAAAAGTGACGTCACA
ATGAATTTTCCTAACGACGGGCAACTCTGGACAATGTAGGGCTCTCGTCA
TGCGAAAAGAACCAATTGCATTGCGCAAAAAGTCGTGTAGCCCGCTTCGA
AAAAGTAACCGGTTAACAATTTCTTGAATTCAATGGTTGGATACAGCTAC
TCTAGGGGTCATTAATCTGAAGTTTGGGATTCAGGAGGGCATTTACTCAA
TGAATACTCGACTGTTTTGTCAGAAACCTCTATACTAAGGAGCAGCAGAT
CTGAGGTGGTACAAAACTTTACGACGGATAGTTTCGGTTAACCATTTTCT
TTTGAGGGAATGAAAACTCTGTAATAAATTTTTTATGGTCAAATGTAAAT
ATTCTCTTTAATATTTAGAAAATCAAAATAAAACATCATAAAATGAAGCC
ACAAACTCCACCATATAAGATCATCGAGGCTGTTGGTTTAGTTTTCATCA
TTTTGGGTCTGTTTACATGTGTAACGTTTTTGTTCCATTCAGACTATGCT
TATTTCGGACCAGCAATGATCGGTCTTGGTATTTGCCTAATGTGTGGAGG
GCGTTATATGTATTATCGTTTATATAGCAAGCTGGAGAATAGTTATGACC
GCCATGTTGACGACGTAGAGGCTCCTGTTAGCTCTGAGGAACAACAACAA
AGAACTTCAATAAATTCTCAAAATGTGTCTGTAGCCTACAGTACGAATGG
TGGATACGCAGCATCGCAACAAGGTGTGTAGATAAAGGTTTGTTTCTTAC
TCAAGTTTTTTTTCTCTTGTTTTTATTTTTAGGTACACGTTTTTTTATAA
GAACATTCAAAATTTTTGAAGCCTTCGGATGTTCTTAACTTTTTGAGTTT
CAAGCCTGAAAATGTTCTTAACTTGTTCTTAATATCTTTGCAACCGAACC
CTTATGTTCTTATAGTTTGTTCTTATATTAAAAAACGTGTAACTTATAAT
TTCTTTGTGAGTCAAAACTGCTTTTGCGAGGCAAATAAAATGTAAAAATT
TGCAATTCTCATGAATTTAACGAATTATCCCTTTATTTTAAGGATAAAAC
CCCGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCCCCTTACAGTGCATTTTAAACATG
TTGGAAAAGGTACCCTTAGGACCCGCACATACCCGTCGGGCCTTTTGCCC
AGCTGCCCCCCCCCCCGGGATAAAACCAAAAACTACCGCTTTAAAAATGC
ACAGATTTGTGAAAATAAGTAAACCTTTCAGCTGATGAAAGGTTGTTATA
TTATTCTAAAATCCCTAGAACTTCACTTTTATGTTAAAAACCTTGAGCTG
AGCTCGCCCCCGCTTTAAATATTTAAGTTTTATTAGAGCCTTTACAGGGG
GGGGTTGTACTTTTACGGTGTGACGGGATTGGGCCTTTTTTAGTACGGTA
TTACGGGATTTGACGAAAAAAAGACGGGAAAACGGTATTTTAAAATCAGA
CGGTGACGGTTGTACAAACCGCTGTGACGGTGTTATTATTTTTTTCACTT
TTCGAGATTCCGGGATTCAGCAAAAATTATGACGGGAAAACGGTATTTTA
AAATTAGACGGTGACGGTTGTACAAACCGCTGTGACGGTGTTATTATTTT
TTTCACTTTTCGAGATTCCGGGATTCAGCAAAAATTTTGGCGGGAAAACG
GTTTTTCGAACCCCCCCCCCCCTTTACAGTCAGTTGAAAACCGGCTGCTT
TCGCAATTTAGGCTATACTAGGTATATATTATGCAATGAATAGTTAGTAG
GTAAATTAGTATAGAACTTTGATGAAAACAGCTCTATTGGAAGGCAAACT
TTCTCATAAAAGTCACGCGGAAATCACGAGAAAGTCTGCGCTGTGATACA
TAGTTAAACGAAAAACTAGAAGTTCATATTTCAAATATTGCAAAACCTCC
GAAATCGCATATCACAGTATCTTTCTTTGTAACAGAAAGTGCAAAAATTT
CTGTTTGACCTCATTTCACGAAAAGACTCTTTTTCCGCGCGATCTAAAAA
TCCTTAAAAATGCGGGTCCTAATCTATACTTAAGGGCTACATACACTACA
CAATATATTGCCAGGTAATATATTGGCAATTTATTTATACAGACAATATA
TTGTTAAGGTGTCCGCAATATATTGTCAGCTCGATTTGCAATATTCCAAC
AATATAGAGGGATTTTTAAAGAAAAAATTTCTTTTTATAATAGAGTACCT
GATGTTTACTTTGTACATTACGGTCCGAAAACTATTTTGTTGAATATTTC
TCGTCAATATATTGTGTTTATATATTGTCCTTTTTAGACTAATAGTTTTG
TTAGAAGAAGAGAAGTTGATAAAAATTGCTACGGCTTCAACAATGCAGAC
TCAAAAAGAACACCAAAAAATGAATCCAAAATTTTGACGAGTTGTTGTGT
TGTCGAGTTTTGTTAATTAGAAATTGGACTGTATTTAGGAAGTGTTCGAG
CTTCATCTTTCTTTACTAAAAATTCTTATTCATTGTTTTCTTTTTTTAGA
TGTTAGAGAGGGATCAAATGTGATTTAGAAGTAGAATGCCACCCACAGAT
GTAAACTTCCTGCGAAAGGCTTGACCGTGTTGTCATTTGCAATTTTGTCC
AAAGTTAAGTCTGTTTTAAGACTTTGATTGGTTGGAATGTACTAGTTATC
CAGGCAGGCACACGACGCGGCAATTCAAAGTTCTACTCACGTTATATGGA
TATTATAGTCGCGACATGGATGTTGTTAAGATGTTTTGTTTTGTCTTGGT
TGCCCTCGGAAAGACTCAGTAATTTTTGGATACCTATAATAGATAGAAAA
CACCAAACACCCCGGAGCTATTCCCTGATAATTGATATTTGTTCGATTTT
AGTAATTTCTCGTTTCAAAAACTAAAACGTTCATTTTAAAACCATCAACA
ATTAGGTTTCGTAAGAGCGGTAATGATACACATTTTTGCCAAAAACTATA
TTCGCCATAAAAAGTTAAATGTTTAAAGGACATTTTTGCTAAATTTGTAT
CATAATTTTCAATACTTTGACAGAGCCTTCGCTAGGGCGACTTTGTTTTA
AATTCACAGAATTAAAGTGTTCCAAAACCTTGGGCATAAATGTTAAGCTT
ACTCCTAAAGTAAAGGTGTTTTTATATAGGACATTTCTTGGGATGGGGGT
CAAGTATTTTATACATAGTAATTTTTTTTAAATGACAACTATGAAATTTT
AGAGACGTAGAAATATGAATTAATTTCAAAATAGAATAAAAATGAAAATA
AAAATAAAATTAGTTACATACCTGTTATTTTTCCTTACTTTTCTTGTTTT
TGTTCTTCATGTAACACGACCATTATTCATTTCCATTTTATTGTCAACTA
AT

Coding sequence (CDS) from alignment at sc0000093:460301..464802-

>TCONS_00009411 ID=TCONS_00009411|Name=TCONS_00009411|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at sc0000093:460301..464802- (Clytia hemisphaerica)
ATGTTAGAGAGGGATCAAATGTGATTTAGATGAAGCCACAAACTCCACCA
TATAAGATCATCGAGGCTGTTGGTTTAGTTTTCATCATTTTGGGTCTGTT
TACATGTGTAACGTTTTTGTTCCATTCAGACTATGCTTATTTCGGACCAG
CAATGATCGGTCTTGGTATTTGCCTAATGTGTGGAGGGCGTTATATGTAT
TATCGTTTATATAGCAAGCTGGAGAATAGTTATGACCGCCATGTTGACGA
CGTAGAGGCTCCTGTTAGCTCTGAGGAACAACAACAAAGAACTTCAATAA
ATTCTCAAAATGTGTCTGTAGCCTACAGTACGAATGGTGGATACGCAGCA
TCGCAACAAGATGTTAGAGAGGGATCAAATGTGATTTAGATGAAGCCACA
AACTCCACCATATAAGATCATCGAGGCTGTTGGTTTAGTTTTCATCATTT
TGGGTCTGTTTACATGTGTAACGTTTTTGTTCCATTCAGACTATGCTTAT
TTCGGACCAGCAATGATCGGTCTTGGTATTTGCCTAATGTGTGGAGGGCG
TTATATGTATTATCGTTTATATAGCAAGCTGGAGAATAGTTATGACCGCC
ATGTTGACGACGTAGAGGCTCCTGTTAGCTCTGAGGAACAACAACAAAGA
ACTTCAATAAATTCTCAAAATGTGTCTGTAGCCTACAGTACGAATGGTGG
ATACGCAGCATCGCAACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005270XLOC_005270Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009411-proteinTCONS_00009411-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009411-exon-sc0000093-1575043694:463330..464802TCONS_00009411-exon-sc0000093-1575043694:463330..464802Clytia hemisphaericaexon
TCONS_00009411-exon-sc0000093-1575043694:460301..461153TCONS_00009411-exon-sc0000093-1575043694:460301..461153Clytia hemisphaericaexon
TCONS_00009411-exon-sc0000093-1510915933:463330..464802TCONS_00009411-exon-sc0000093-1510915933:463330..464802Clytia hemisphaericaexon
TCONS_00009411-exon-sc0000093-1510915933:460301..461153TCONS_00009411-exon-sc0000093-1510915933:460301..461153Clytia hemisphaericaexon
TCONS_00009411-exon-sc0000093-1491911889:463330..464802TCONS_00009411-exon-sc0000093-1491911889:463330..464802Clytia hemisphaericaexon
TCONS_00009411-exon-sc0000093-1491911889:460301..461153TCONS_00009411-exon-sc0000093-1491911889:460301..461153Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093supercontigsc0000093:460301..464802 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.679158	0.410849	0.712448	1.74957	2.972	2.63113	5.41263	5.01094	3.54475	3.43119	4.58208	3.95316	2.479	2.69606	2.63452	2.65278	3.33932	3.83266	2.88914	1.92541	3.34051	5.12559	2.15024	2.69907	2.85159	3.43927	2.05063	2.19655	4.09142	2.36901
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009411 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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