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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009403 ID=TCONS_00009403|Name=TCONS_00009403|organism=Clytia hemisphaerica|type=transcript|length=2827bpRun BLAST on NCBI protein sequence of TCONS_00009403-protein >TCONS_00009403-protein ID=TCONS_00009403-protein|Name=TCONS_00009403-protein|organism=Clytia hemisphaerica|type=polypeptide|length=651bp MRQEIKMADPLRHIYQEGINKLRSNPNAYFYYESGADYEQTLADNEYAYKRun BLAST on NCBI transcript from alignment at sc0000093:346156..404485- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009403 ID=TCONS_00009403|Name=TCONS_00009403|organism=Clytia hemisphaerica|type=transcript|length=58330bp|location=Sequence derived from alignment at sc0000093:346156..404485- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000093:346156..404485- >TCONS_00009403 ID=TCONS_00009403|Name=TCONS_00009403|organism=Clytia hemisphaerica|type=CDS|length=25428bp|location=Sequence derived from alignment at sc0000093:346156..404485- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009403 vs. Swiss-Prot (Human)
Match: HAOX1 (Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1 SV=1) HSP 1 Score: 316.235 bits (809), Expect = 3.475e-98 Identity = 148/343 (43.15%), Postives = 228/343 (66.47%), Query Frame = 1
Query: 259 YFYYESGADYEQTLADNEYAYKRYKVYPHLLKNDSRKTRQDDIDLSVNAFGEDFDIPIFLAPTAMQKMAHTDGEVGTAGAAVSKGTCMGVSTLSTTSYENLRQIVPHCTYLMQLYVTKDASLSNALIKKAESAGFKGVLFTVDAPILGQRIADVKSKFHLPRHLSLENFNGVIEHV--------DEGLMKYISDNTSSALCWDDVKKIRSITNMPIYLKGIITHEDAEKCLEHDVQGIIVSNHGGRQLDGTPATIDVLSEIVRAVGHRIPVYVDGGIRRGSDVFKALALGARGVFIGRPVLYGLSYDGEEGVKEILDHMIHELKSLMRLTGCRSIKDINSSLV 1263
Y YY SGA+ E+TLADN A+ R+K+YP +L+N + + DLS + G+ +PI + TAMQ+MAH DGE+ T A S GT M +S+ +T+S E + + P +QLY+ KD ++ L+++AE G+K + TVD P LG R+ DV+++F LP L ++NF D GL Y++ ++ W+D+K +R +T++PI KGI+ +DA + ++H + GI+VSNHG RQLDG PATIDVL EIV AV ++ V++DGG+R+G+DV KALALGA+ VF+GRP+++GL++ GE+GV+++L+ + E + M L+GC+++K I+ +LV
Sbjct: 24 YDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVA------ETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLV 360 HSP 2 Score: 123.25 bits (308), Expect = 9.519e-30 Identity = 61/154 (39.61%), Postives = 100/154 (64.94%), Query Frame = 1
Query: 1621 YNGLVVDLSLDNLEKIKELKLRTGLPVLATGVTSRHDTLQCLRYQLDGIVVS---TKNCEDQLTPIEILPEIAETIRCRIPIYFEGGIRKGTDIVKALARGASFVFVKEPLLWAHSYKGSEGVSKVLDILNEEFQRAMYLAGCKDVETIKPSLV 2073
Y +D S+ + E IK L+ T LP++A G+ D + +++ L+GI+VS + + I++LPEI E + ++ ++ +GG+RKGTD++KALA GA VFV P++W +++G +GV VL+IL EEF+ AM L+GC++V+ I +LV
Sbjct: 208 YVAKAIDPSI-SWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLV 360 The following BLAST results are available for this feature:
BLAST of TCONS_00009403 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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