TCONS_00009395 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009395
Unique NameTCONS_00009395
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length931

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009395 ID=TCONS_00009395|Name=TCONS_00009395|organism=Clytia hemisphaerica|type=transcript|length=931bp
CGGGTCATAATTCTTAACAAGCATTAACTACAGTCGTTTGAAAGAAATAA
AATGCAATCAAACGAGATAATTATCAATATTTCAcctatttcattttaaa
attttcaatttagctGTAACTATATCATacaaaaatacacaaaatataaa
atctattgaaaacaaatgaaaaaacaaatctAATACTTCTCAAAGCGCTT
ATACTTTTGATGCTTAAATATTTGTGGCTGGTGGCCCACTTTGACCAACT
tgatatattcaatttcaagtcCAAAAGGTCCATTATTTTTATCGCTGATG
GAAACACCAAGGGTTCGAATATTAGCAAAATCAACTTGTTCATCTTGTAG
GTAACCTTGGTAAGTCATTAGAAACTTGGTGAAAGGGATTCGTTCAACTT
CCCAATACGGTCCACCTTTGGTGAACAAAAAAGCTTGAAATAAATCATAC
TGGTTAAGAAGCAACATTGATTCTGTTTGTAGATTGACAAAATAACAACG
ACCATCTCCTCTGTATTTGATATCCACTGCATCATAATAAGTCATGTCAG
TCGTTTCGACCTTATTGAATAATCCAATAACAGGTTGTGATCGTATCCCA
CAAAATCCACTATGATCTACTTTCAATCCTTTATCTAGCTCAGTTGACAA
GTCACCTTTTATCATCAGTCGCCCATTGACACTAGTCGTTAAGCTTGCTG
TACTTTTTCCACCGACATCTATATCAGTAATaagatcaaaatttttaatt
gtttctgGTTTAACAAAATCATAAAGTACTTTTACATCTTCCATCATGAT
ATTTTCACCTTTGAAGCCTTTCCACATTGATTGaaggttatttttcacat
attTGCCACAATCTTGTAAAAACTTTCTTGTTATCATTTTAATGTTTATA
ATATAactgaaaaacaaacaaaaaaaacatt
Run BLAST on NCBI

transcript from alignment at sc0000093:181063..182310-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009395 ID=TCONS_00009395|Name=TCONS_00009395|organism=Clytia hemisphaerica|type=transcript|length=1248bp|location=Sequence derived from alignment at sc0000093:181063..182310- (Clytia hemisphaerica)
CGGGTCATAATTCTTAACAAGCATTAACTACAGTCGTTTGAAAGAAATAA
AATGCAATCAAACGAGATAATTATCAATATTTCACCTATTTCATTTTAAA
ATTTTCAATTTAGCTGTAACTATATCATACAAAAATACACAAAATATAAA
ATCTATTGAAAACAAATGAAAAAACAAATCTAATACTTCTCAAAGCGCTT
ATACTTTTGATGCTTAAATATTTGTGGCTGGTGGCCCACTTTGACCAACT
TGATATATTCAATTTCAAGTCCAAAAGGTCCATTATTTTTATCGCTGATG
GAAACACCAAGGGTTCGAATATTAGCAAAATCAACTTGTTCATCTTGTAG
GTACCCNAAAGAAATAAAATGCAATCAAACGAGATAATTATCAAGATTTC
ACCTATTTCATTTTAAAATTTTCAATTTAGCTGTAACTATATCATACAAA
AATACACAAAATATAAAATCTATTGAAAACAAATGAAAAAATAAATCTAA
TACTTCTCAAAGCGCTTATACTTTTGATGCTTAAATATTTGTGGCTGGTG
GCCCACTTTGACCAACTTAATATATTCAATTTCAAGTCCAAAAGGTCCAT
TATTTTTATCACTGATGGAAACACCAAGTGTTCGAATATTAGCAAAATCA
ACTTGTTCATCTTGCAGGTAACCTTGGTAAGTCATTAGAAACTTGGTGAA
AGGGATTCGTTCAACTTCCCAATACGGTCCACCTTTGGTGAACAAAAAAG
CTTGAAATAAATCATACTGGTTAAGAAGCAACATTGATTCTGTTTGTAGA
TTGACAAAATAACAACGACCATCTCCTCTGTATTTGATATCCACTGCATC
ATAATAAGTCATGTCAGTCGTTTCGACCTTATTGAATAATCCAATAACAG
GTTGTGATCGTATCCCACAAAATCCACTATGATCTACTTTCAATCCTTTA
TCTAGCTCAGTTGACAAGTCACCTTTTATCATCAGTCGCCCATTGACACT
AGTCGTTAAGCTTGCTGTACTTTTTCCACCGACATCTATATCAGTAATAA
GATCAAAATTTTTAATTGTTTCTGGTTTAACAAAATCATAAAGTACTTTT
ACATCTTCCATCATGATATTTTCACCTTTGAAGCCTTTCCACATTGATTG
AAGGTTATTTTTCACATATTTGCCACAATCTTGTAAAAACTTTCTTGTTA
TCATTTTAATGTTTATAATATAACTGAAAAACAAACAAAAAAAACATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005261XLOC_005261Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009395-exon-sc0000093-1575043694:181961..182310TCONS_00009395-exon-sc0000093-1575043694:181961..182310Clytia hemisphaericaexon
TCONS_00009395-exon-sc0000093-1575043694:181063..181643TCONS_00009395-exon-sc0000093-1575043694:181063..181643Clytia hemisphaericaexon
TCONS_00009395-exon-sc0000093-1510915933:181961..182310TCONS_00009395-exon-sc0000093-1510915933:181961..182310Clytia hemisphaericaexon
TCONS_00009395-exon-sc0000093-1510915933:181063..181643TCONS_00009395-exon-sc0000093-1510915933:181063..181643Clytia hemisphaericaexon
TCONS_00009395-exon-sc0000093-1491911889:181961..182310TCONS_00009395-exon-sc0000093-1491911889:181961..182310Clytia hemisphaericaexon
TCONS_00009395-exon-sc0000093-1491911889:181063..181643TCONS_00009395-exon-sc0000093-1491911889:181063..181643Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093supercontigsc0000093:181063..182310 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.2613	22.2068	5.02717	1.843	3.77568	1.79761	3.05011	3.31942	3.10807	4.11917	2.72515	1.05368	2.47495	2.64199	3.06682	3.13438	9.43168	7.98116	2.4406	1.64899	6.16691	5.04806	33.0984	26.4627	1.62668	1.32531	7.91299	4.82804	16.6817	19.443
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013857NADH-UbQ_OxRdtase-assoc_prot30
IPR008979Galactose-bd-like
Blast
[Close]
BLAST of TCONS_00009395 vs. Swiss-Prot (Human)
Match: CIA30 (Complex I intermediate-associated protein 30, mitochondrial OS=Homo sapiens GN=NDUFAF1 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 8.944e-31
Identity = 60/207 (28.99%), Postives = 119/207 (57.49%), Query Frame = -3 
Query:  252 KYVKNNLQSMWKGFKGE---NIMMEDVKVLYDFVKPETIKNFDLITDIDVGGKSTASLTTSVNGR-LMIKGDLSTELDKGLKVDHSGFCGIRSQPVIGLFNKVETTDMTYYDAVDIKYRGDGRCYFVNLQTESMLLLNQYDLFQAFLFTKGGPYWEVERIPFTKFLMTYQGYLQDEQVDFA--NIRTLGVSISDKNNGPFGLEIEYI 854
            + +K+ +   W+G +G     +++E  KV++ F   E +  + + +D  +GG+S   L    N +  ++ G LS+E  +  +   SG+C + S+   G F +  + D + ++ + ++ RGDGR + VN++ ++        ++  F+FT+GGPYW+  +IPF+KF  + +G ++D Q +     I ++G +++DK +GPF LEI++I
Sbjct:   95 RLLKDEIVDHWRGPEGHPLHEVLLEQAKVVWQFRGKEDLDKWTVTSDKTIGGRSEVFLKMGKNNQSALLYGTLSSEAPQDGESTRSGYCAMISRIPRGAFERKMSYDWSQFNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYFMFTRGGPYWQEVKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDFI 301
The following BLAST results are available for this feature:
BLAST of TCONS_00009395 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CIA308.944e-3128.99Complex I intermediate-associated protein 30, mito... [more]
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