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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009388 ID=TCONS_00009388|Name=TCONS_00009388|organism=Clytia hemisphaerica|type=transcript|length=913bp
AAACCATCATGAAGACCGCCATCTTTTTTGCAGCTTTCTTGGCAGtcgCC
CTAGCCGATTTGACATTCTGGGAAGAGAGAATGTCGACGGAAAAGAAAAA
CGATGCTCTTCCAGAAGTACCATGCCCTGACACCTTGTGCAATGGAAAAG
CTGATGGAAACCATTATTACTACCCATACTACACTGGTGCTTACAGATAC
AATTTCTTCCTCCAATGCTCAGGTGGAAAAGCTACCTGCCAAGCTTGTTT
CCCATTGTCCTTGGAATACAGCTATGAATGCAACCAATGTTTGTACAAGA
AATCTGATGCTTGCGTCACCACAAAACCATGGAAACCAGTCGCCACTTTC
ACTTGCCCAGACAGATGTCCATCTTATGGACCTAAATACACTGGTAATGT
CGCTGATCCAGCTCAAAGCAAACAATACGTTGCATGCTGGGAAGGTGTCA
CTGTCGGATGTATTGCTTGTCCAGGAAACTTGATGTTCAACGAACAAGAG
AACGCTTGTTTGTTTGAAGGAAAATACATCACTGAGCCAACTAAACAGTA
AATCACCAATCGAAATCAACAATGAACGTTTGAAATTGGGAAATTGAATT
CCTTTTAACAAAACATTTACTTTAttgatcaaaaatattactaccgCTTA
TTACCgctctttttcactttttctttcccTATCACTTTTCTAGACGTCTT
TCCATAAAGTTCTTTCTAGTCTTATTCTATTCTGTTCATTTCTAGTTCTT
CCTCTTTCATTCACCTCGCTAGCTTATTTACAtcacaaatattttaaaat
atattatctCAGAATTTCTAGATTATACAAATAGAATATTTGGATACCTG
TTATTAAGGAATATTGATTTCTAAAGACGAAATAAAATAACTTTCATCTG
GTCATGAAAAAAT Run BLAST on NCBI protein sequence of TCONS_00009388-protein >TCONS_00009388-protein ID=TCONS_00009388-protein|Name=TCONS_00009388-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
TIMKTAIFFAAFLAVALADLTFWEERMSTEKKNDALPEVPCPDTLCNGKA
DGNHYYYPYYTGAYRYNFFLQCSGGKATCQACFPLSLEYSYECNQCLYKK
SDACVTTKPWKPVATFTCPDRCPSYGPKYTGNVADPAQSKQYVACWEGVT
VGCIACPGNLMFNEQENACLFEGKYITEPTKQ Run BLAST on NCBI transcript from alignment at sc0000093:64685..65834- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009388 ID=TCONS_00009388|Name=TCONS_00009388|organism=Clytia hemisphaerica|type=transcript|length=1150bp|location=Sequence derived from alignment at sc0000093:64685..65834- (Clytia hemisphaerica)
AAACCATCATGAAGACCGCCATCTTTTTTGCAGCTTTCTTGGCAGGTATA
ACACGTCAGTCAATCCTGCTCATTTTACTCAAGTTCTGTTTCTGCTGCAA
ATCATGGATAGACTTTTTCACTGAATCTGGATTGGTCTTCAAATACTGTA
ATATCTACACGGAGGCAGTCTTTATTCTTTAATAGTACATGTTTACGGCC
TCTATACAAGTTCAAGAAACATTCTCGATACATAAATTTAGCTCTATTTT
TTCATATGAATCTTTGACTTTCTTTTTTTCAGTCGCCCTAGCCGATTTGA
CATTCTGGGAAGAGAGAATGTCGACGGAAAAGAAAAACGATGCTCTTCCA
GAAGTACCATGCCCTGACACCTTGTGCAATGGAAAAGCTGATGGAAACCA
TTATTACTACCCATACTACACTGGTGCTTACAGATACAATTTCTTCCTCC
AATGCTCAGGTGGAAAAGCTACCTGCCAAGCTTGTTTCCCATTGTCCTTG
GAATACAGCTATGAATGCAACCAATGTTTGTACAAGAAATCTGATGCTTG
CGTCACCACAAAACCATGGAAACCAGTCGCCACTTTCACTTGCCCAGACA
GATGTCCATCTTATGGACCTAAATACACTGGTAATGTCGCTGATCCAGCT
CAAAGCAAACAATACGTTGCATGCTGGGAAGGTGTCACTGTCGGATGTAT
TGCTTGTCCAGGAAACTTGATGTTCAACGAACAAGAGAACGCTTGTTTGT
TTGAAGGAAAATACATCACTGAGCCAACTAAACAGTAAATCACCAATCGA
AATCAACAATGAACGTTTGAAATTGGGAAATTGAATTCCTTTTAACAAAA
CATTTACTTTATTGATCAAAAATATTACTACCGCTTATTACCGCTCTTTT
TCACTTTTTCTTTCCCTATCACTTTTCTAGACGTCTTTCCATAAAGTTCT
TTCTAGTCTTATTCTATTCTGTTCATTTCTAGTTCTTCCTCTTTCATTCA
CCTCGCTAGCTTATTTACATCACAAATATTTTAAAATATATTATCTCAGA
ATTTCTAGATTATACAAATAGAATATTTGGATACCTGTTATTAAGGAATA
TTGATTTCTAAAGACGAAATAAAATAACTTTCATCTGGTCATGAAAAAAT
Coding sequence (CDS) from alignment at sc0000093:64685..65834- >TCONS_00009388 ID=TCONS_00009388|Name=TCONS_00009388|organism=Clytia hemisphaerica|type=CDS|length=1098bp|location=Sequence derived from alignment at sc0000093:64685..65834- (Clytia hemisphaerica)
TCGCCCTAGCCGATTTGACATTCTGGGAAGAGAGAATGTCGACGGAAAAG
AAAAACGATGCTCTTCCAGAAGTACCATGCCCTGACACCTTGTGCAATGG
AAAAGCTGATGGAAACCATTATTACTACCCATACTACACTGGTGCTTACA
GATACAATTTCTTCCTCCAATGCTCAGGTGGAAAAGCTACCTGCCAAGCT
TGTTTCCCATTGTCCTTGGAATACAGCTATGAATGCAACCAATGTTTGTA
CAAGAAATCTGATGCTTGCGTCACCACAAAACCATGGAAACCAGTCGCCA
CTTTCACTTGCCCAGACAGATGTCCATCTTATGGACCTAAATACACTGGT
AATGTCGCTGATCCAGCTCAAAGCAAACAATACGTTGCATGCTGGGAAGG
TGTCACTGTCGGATGTATTGCTTGTCCAGGAAACTTGATGTTCAACGAAC
AAGAGAACGCTTGTTTGTTTGAAGGAAAATACATCACTGAGCCAACTAAA
CAGTAAACCATCATGAAGACCGCCATCTTTTTTGCAGCTTTCTTGGCAGT
CGCCCTAGCCGATTTGACATTCTGGGAAGAGAGAATGTCGACGGAAAAGA
AAAACGATGCTCTTCCAGAAGTACCATGCCCTGACACCTTGTGCAATGGA
AAAGCTGATGGAAACCATTATTACTACCCATACTACACTGGTGCTTACAG
ATACAATTTCTTCCTCCAATGCTCAGGTGGAAAAGCTACCTGCCAAGCTT
GTTTCCCATTGTCCTTGGAATACAGCTATGAATGCAACCAATGTTTGTAC
AAGAAATCTGATGCTTGCGTCACCACAAAACCATGGAAACCAGTCGCCAC
TTTCACTTGCCCAGACAGATGTCCATCTTATGGACCTAAATACACTGGTA
ATGTCGCTGATCCAGCTCAAAGCAAACAATACGTTGCATGCTGGGAAGGT
GTCACTGTCGGATGTATTGCTTGTCCAGGAAACTTGATGTTCAACGAACA
AGAGAACGCTTGTTTGTTTGAAGGAAAATACATCACTGAGCCAACTAAAC
AGTAAACCATCATGAAGACCGCCATCTTTTTTGCAGCTTTCTTGGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009388-exon-sc0000093-1575043694:65790..65834 | TCONS_00009388-exon-sc0000093-1575043694:65790..65834 | Clytia hemisphaerica | exon |
| TCONS_00009388-exon-sc0000093-1575043694:64685..65552 | TCONS_00009388-exon-sc0000093-1575043694:64685..65552 | Clytia hemisphaerica | exon |
| TCONS_00009388-exon-sc0000093-1510915933:65790..65834 | TCONS_00009388-exon-sc0000093-1510915933:65790..65834 | Clytia hemisphaerica | exon |
| TCONS_00009388-exon-sc0000093-1510915933:64685..65552 | TCONS_00009388-exon-sc0000093-1510915933:64685..65552 | Clytia hemisphaerica | exon |
| TCONS_00009388-exon-sc0000093-1491911889:65790..65834 | TCONS_00009388-exon-sc0000093-1491911889:65790..65834 | Clytia hemisphaerica | exon |
| TCONS_00009388-exon-sc0000093-1491911889:64685..65552 | TCONS_00009388-exon-sc0000093-1491911889:64685..65552 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000093 | supercontig | sc0000093:64685..65834 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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