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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009386 ID=TCONS_00009386|Name=TCONS_00009386|organism=Clytia hemisphaerica|type=transcript|length=484bp GTGCcacaaacaacaacaacgaccaccaccGCCGCAACAACACCCGCAAC AACCACCACAATAACAACCGCAACGACCACCCCTGCTGCAGGTTGCCAGA TAGAAGGTGCTCCAGAAGATGGTTTATCAGTCTCCAGTACCAAATGTTTA AAGTTTCAAAAGTCGAGTGCAATAGTGTTAGCTGAAGAAACATTTGGAGC TGGCATAAAACTGTGTGGCGAACAACGAGGACAACTAGTGCAATTCAAAA ATATGACGGAATTCACTCAGTTCAAATCACTGTTTATAGGCAATGGGATT TTGTCTGATCGTGTTTGGGTCGGTGCAAGTGATGCATTTGAGGAAGGGGT ATTGAAGTGGCAAGATGgTACGGTAGGAACTGCTATCGAATTCGGAACGA ATTCATCAAACGATTTGGCGACAAATTGCATTGTCTATGACAGCGGAACC CAAAAGTTGGAATGGGATAATTGTAGAACTGAAC Run BLAST on NCBI protein sequence of TCONS_00009386-protein >TCONS_00009386-protein ID=TCONS_00009386-protein|Name=TCONS_00009386-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
VPQTTTTTTTAATTPATTTTITTATTTPAAGCQIEGAPEDGLSVSSTKCL KFQKSSAIVLAEETFGAGIKLCGEQRGQLVQFKNMTEFTQFKSLFIGNGI LSDRVWVGASDAFEEGVLKWQDGTVGTAIEFGTNSSNDLATNCIVYDSGT QKLEWDNCRTE Run BLAST on NCBI transcript from alignment at sc0000093:14609..16450- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009386 ID=TCONS_00009386|Name=TCONS_00009386|organism=Clytia hemisphaerica|type=transcript|length=1842bp|location=Sequence derived from alignment at sc0000093:14609..16450- (Clytia hemisphaerica) GTGCCACAAACAACAACAACGACCACCACCGCCGCAACAACACCCGCAAC
AACCACCACAATAACAACCGCAACGACCACCCCTGCTGCAGGTATTTAAT
TTCAAATCATTTAAAAGTATTCAACTGAAAATACCATCTATTTATAGCAT
ACCTTTGAACTGCTTTTTTTTGTGATTCGCAATGTAACTTGTTAATTAAA
CGTGATCCAAAATCTAAAACAGTAAATACATTTTGCCGTCTAACGCAAAT
GTAGACTATGCTATAAGTCTAAGACGAATCACTATCTAAGAAAAAAGCCC
AAAGCCGAAGAAAATTCGCAAACGGGCTTTTTGCCAAAAGAGTTTACAGC
GGGTACAGTTTGTCAGTCTTCGAAACTGTCTCCCGCTGATTCTTTTTCCA
TATACCGCCATACCGCCATATTTTCCCGCTGTTCCTATCATTGTAACGAA
CGATAACATTGTCTAATGCAAATGCAAACATATATCTTAATTATTCAGTA
AGGGTGGCCCCGTGTCCCTTGACACATGGTGACCATGAAAATCCTTTGAA
ATACATGGCCAAAAAACTTGTCAAAAAACCAACTATAAAGCCTTGAAATT
TGCAAAGAAAGATTGATGCTCTGTTACATATGTTAATCTTTTAATCATGG
TTCTGCCTATTTGAGGAACTCCAAAACACTTCCTTGTCTCTTTAAATGGA
TCAAAATGTACACTCTTATGTCATAATACTCTCTCCGATGTCAAACTAAG
CGTCGTTCCAGGGCCCACGCCATGAAATTGAAAGTGGGGCAATGAATATA
GAGTCTAAGGAGGTGCAACCAAAATTTTTTACTTTGGTTTGCAAAAAAGT
TGGGTGGCGTGGGCCCTTCGTTTCTTATGGAATAATCAGGAATAATAATC
TTAAAAAATAAATACTTAAATTAGTAATATAAGTGTTTCTTTGTTGGTTT
GTTACTAAGTTGGTTGATTTTCTAGCTCTTTTTTCGTCTGATTAAAGTTT
GTTGGACTAAAATTTTACCACTATTTGATAGTAGCGAGTTTCTACAATAA
AGCCTTTAAAAAATTATTTTCAAAACCTTATCATTCGACTATTCAGGTTG
CCAGATAGAAGGTGCTCCAGAAGATGGTTTATCAGTCTCCAGTACCAAAT
GTTTAAAGTTTCAAAAGTCGAGTGCAATAGTGTTAGCTGAAGAAACATTT
GGAGCTGGCATAAAACTGTGTGGCGAACAACGAGGACAACTAGTGCAATT
CAAAAATATGACGGAATTCACTCAGTTCAAATCACTGTTTATAGGCAATG
GGATTTTGTCTGATCGTGTTTGGGTCGGTGCAAGTGATGCATTTGAGGAA
GGGGTATTGAAGTGGCAAGATGGTGAGTAGCCCACAGATATCTTATATGA
AACACTAGATAGAGCTACTCTGTATTTCCCAAGCAACGGTAGTCGAAGCA
AAATAATTCGTCATCTTTGCTGAAAGTAGGTCATAGTAGAAACCTTGGCG
TTTTCACTTCACTTAAGATTGCTACCCGGGGCTGCTATAGGTTTGCGGAA
TGATGGTCATGTGCCGCCCGAATATACCCGTACTCCCATTTTGCCTAGGT
ACCCCCCCCCACCCCCGGAGGGATTGCTTATACTTGCGAAATAAAATCCA
GAAAATTTCGTGATCTTTGGACTCGTTCACTCGATTTTAAATAAAGAATA
TTTTACTTTATCTTTTTTTTTACAGGTACGGTAGGAACTGCTATCGAATT
CGGAACGAATTCATCAAACGATTTGGCGACAAATTGCATTGTCTATGACA
GCGGAACCCAAAAGTTGGAATGGGATAATTGTAGAACTGAAC Coding sequence (CDS) from alignment at sc0000093:14609..16450- >TCONS_00009386 ID=TCONS_00009386|Name=TCONS_00009386|organism=Clytia hemisphaerica|type=CDS|length=1449bp|location=Sequence derived from alignment at sc0000093:14609..16450- (Clytia hemisphaerica) GTACGGTAGGAACTGCTATCGAATTCGGAACGAATTCATCAAACGATTTG GCGACAAATTGCATTGTCTATGACAGCGGAACCCAAAAGTTGGAATGGGA TAATTGTAGAACTGAAGTTGCCAGATAGAAGGTGCTCCAGAAGATGGTTT ATCAGTCTCCAGTACCAAATGTTTAAAGTTTCAAAAGTCGAGTGCAATAG TGTTAGCTGAAGAAACATTTGGAGCTGGCATAAAACTGTGTGGCGAACAA CGAGGACAACTAGTGCAATTCAAAAATATGACGGAATTCACTCAGTTCAA ATCACTGTTTATAGGCAATGGGATTTTGTCTGATCGTGTTTGGGTCGGTG CAAGTGATGCATTTGAGGAAGGGGTATTGAAGTGGCAAGATGGTGCCACA AACAACAACAACGACCACCACCGCCGCAACAACACCCGCAACAACCACCA CAATAACAACCGCAACGACCACCCCTGCTGCAGGTACGGTAGGAACTGCT ATCGAATTCGGAACGAATTCATCAAACGATTTGGCGACAAATTGCATTGT CTATGACAGCGGAACCCAAAAGTTGGAATGGGATAATTGTAGAACTGAAG TTGCCAGATAGAAGGTGCTCCAGAAGATGGTTTATCAGTCTCCAGTACCA AATGTTTAAAGTTTCAAAAGTCGAGTGCAATAGTGTTAGCTGAAGAAACA TTTGGAGCTGGCATAAAACTGTGTGGCGAACAACGAGGACAACTAGTGCA ATTCAAAAATATGACGGAATTCACTCAGTTCAAATCACTGTTTATAGGCA ATGGGATTTTGTCTGATCGTGTTTGGGTCGGTGCAAGTGATGCATTTGAG GAAGGGGTATTGAAGTGGCAAGATGGTGCCACAAACAACAACAACGACCA CCACCGCCGCAACAACACCCGCAACAACCACCACAATAACAACCGCAACG ACCACCCCTGCTGCAGGTACGGTAGGAACTGCTATCGAATTCGGAACGAA TTCATCAAACGATTTGGCGACAAATTGCATTGTCTATGACAGCGGAACCC AAAAGTTGGAATGGGATAATTGTAGAACTGAAGTTGCCAGATAGAAGGTG CTCCAGAAGATGGTTTATCAGTCTCCAGTACCAAATGTTTAAAGTTTCAA AAGTCGAGTGCAATAGTGTTAGCTGAAGAAACATTTGGAGCTGGCATAAA ACTGTGTGGCGAACAACGAGGACAACTAGTGCAATTCAAAAATATGACGG AATTCACTCAGTTCAAATCACTGTTTATAGGCAATGGGATTTTGTCTGAT CGTGTTTGGGTCGGTGCAAGTGATGCATTTGAGGAAGGGGTATTGAAGTG GCAAGATGGTGCCACAAACAACAACAACGACCACCACCGCCGCAACAACA CCCGCAACAACCACCACAATAACAACCGCAACGACCACCCCTGCTGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00009386-exon-sc0000093-1575043694:16360..16450 | TCONS_00009386-exon-sc0000093-1575043694:16360..16450 | Clytia hemisphaerica | exon |
TCONS_00009386-exon-sc0000093-1575043694:15079..15354 | TCONS_00009386-exon-sc0000093-1575043694:15079..15354 | Clytia hemisphaerica | exon |
TCONS_00009386-exon-sc0000093-1575043694:14609..14725 | TCONS_00009386-exon-sc0000093-1575043694:14609..14725 | Clytia hemisphaerica | exon |
TCONS_00009386-exon-sc0000093-1510915933:16360..16450 | TCONS_00009386-exon-sc0000093-1510915933:16360..16450 | Clytia hemisphaerica | exon |
TCONS_00009386-exon-sc0000093-1510915933:15079..15354 | TCONS_00009386-exon-sc0000093-1510915933:15079..15354 | Clytia hemisphaerica | exon |
TCONS_00009386-exon-sc0000093-1510915933:14609..14725 | TCONS_00009386-exon-sc0000093-1510915933:14609..14725 | Clytia hemisphaerica | exon |
TCONS_00009386-exon-sc0000093-1491911889:16360..16450 | TCONS_00009386-exon-sc0000093-1491911889:16360..16450 | Clytia hemisphaerica | exon |
TCONS_00009386-exon-sc0000093-1491911889:15079..15354 | TCONS_00009386-exon-sc0000093-1491911889:15079..15354 | Clytia hemisphaerica | exon |
TCONS_00009386-exon-sc0000093-1491911889:14609..14725 | TCONS_00009386-exon-sc0000093-1491911889:14609..14725 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000093 | supercontig | sc0000093:14609..16450 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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