TCONS_00009386 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009386
Unique NameTCONS_00009386
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length484

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009386 ID=TCONS_00009386|Name=TCONS_00009386|organism=Clytia hemisphaerica|type=transcript|length=484bp
GTGCcacaaacaacaacaacgaccaccaccGCCGCAACAACACCCGCAAC
AACCACCACAATAACAACCGCAACGACCACCCCTGCTGCAGGTTGCCAGA
TAGAAGGTGCTCCAGAAGATGGTTTATCAGTCTCCAGTACCAAATGTTTA
AAGTTTCAAAAGTCGAGTGCAATAGTGTTAGCTGAAGAAACATTTGGAGC
TGGCATAAAACTGTGTGGCGAACAACGAGGACAACTAGTGCAATTCAAAA
ATATGACGGAATTCACTCAGTTCAAATCACTGTTTATAGGCAATGGGATT
TTGTCTGATCGTGTTTGGGTCGGTGCAAGTGATGCATTTGAGGAAGGGGT
ATTGAAGTGGCAAGATGgTACGGTAGGAACTGCTATCGAATTCGGAACGA
ATTCATCAAACGATTTGGCGACAAATTGCATTGTCTATGACAGCGGAACC
CAAAAGTTGGAATGGGATAATTGTAGAACTGAAC
Run BLAST on NCBI

protein sequence of TCONS_00009386-protein

>TCONS_00009386-protein ID=TCONS_00009386-protein|Name=TCONS_00009386-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
VPQTTTTTTTAATTPATTTTITTATTTPAAGCQIEGAPEDGLSVSSTKCL
KFQKSSAIVLAEETFGAGIKLCGEQRGQLVQFKNMTEFTQFKSLFIGNGI
LSDRVWVGASDAFEEGVLKWQDGTVGTAIEFGTNSSNDLATNCIVYDSGT
QKLEWDNCRTE
Run BLAST on NCBI

transcript from alignment at sc0000093:14609..16450-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009386 ID=TCONS_00009386|Name=TCONS_00009386|organism=Clytia hemisphaerica|type=transcript|length=1842bp|location=Sequence derived from alignment at sc0000093:14609..16450- (Clytia hemisphaerica)
GTGCCACAAACAACAACAACGACCACCACCGCCGCAACAACACCCGCAAC
AACCACCACAATAACAACCGCAACGACCACCCCTGCTGCAGGTATTTAAT
TTCAAATCATTTAAAAGTATTCAACTGAAAATACCATCTATTTATAGCAT
ACCTTTGAACTGCTTTTTTTTGTGATTCGCAATGTAACTTGTTAATTAAA
CGTGATCCAAAATCTAAAACAGTAAATACATTTTGCCGTCTAACGCAAAT
GTAGACTATGCTATAAGTCTAAGACGAATCACTATCTAAGAAAAAAGCCC
AAAGCCGAAGAAAATTCGCAAACGGGCTTTTTGCCAAAAGAGTTTACAGC
GGGTACAGTTTGTCAGTCTTCGAAACTGTCTCCCGCTGATTCTTTTTCCA
TATACCGCCATACCGCCATATTTTCCCGCTGTTCCTATCATTGTAACGAA
CGATAACATTGTCTAATGCAAATGCAAACATATATCTTAATTATTCAGTA
AGGGTGGCCCCGTGTCCCTTGACACATGGTGACCATGAAAATCCTTTGAA
ATACATGGCCAAAAAACTTGTCAAAAAACCAACTATAAAGCCTTGAAATT
TGCAAAGAAAGATTGATGCTCTGTTACATATGTTAATCTTTTAATCATGG
TTCTGCCTATTTGAGGAACTCCAAAACACTTCCTTGTCTCTTTAAATGGA
TCAAAATGTACACTCTTATGTCATAATACTCTCTCCGATGTCAAACTAAG
CGTCGTTCCAGGGCCCACGCCATGAAATTGAAAGTGGGGCAATGAATATA
GAGTCTAAGGAGGTGCAACCAAAATTTTTTACTTTGGTTTGCAAAAAAGT
TGGGTGGCGTGGGCCCTTCGTTTCTTATGGAATAATCAGGAATAATAATC
TTAAAAAATAAATACTTAAATTAGTAATATAAGTGTTTCTTTGTTGGTTT
GTTACTAAGTTGGTTGATTTTCTAGCTCTTTTTTCGTCTGATTAAAGTTT
GTTGGACTAAAATTTTACCACTATTTGATAGTAGCGAGTTTCTACAATAA
AGCCTTTAAAAAATTATTTTCAAAACCTTATCATTCGACTATTCAGGTTG
CCAGATAGAAGGTGCTCCAGAAGATGGTTTATCAGTCTCCAGTACCAAAT
GTTTAAAGTTTCAAAAGTCGAGTGCAATAGTGTTAGCTGAAGAAACATTT
GGAGCTGGCATAAAACTGTGTGGCGAACAACGAGGACAACTAGTGCAATT
CAAAAATATGACGGAATTCACTCAGTTCAAATCACTGTTTATAGGCAATG
GGATTTTGTCTGATCGTGTTTGGGTCGGTGCAAGTGATGCATTTGAGGAA
GGGGTATTGAAGTGGCAAGATGGTGAGTAGCCCACAGATATCTTATATGA
AACACTAGATAGAGCTACTCTGTATTTCCCAAGCAACGGTAGTCGAAGCA
AAATAATTCGTCATCTTTGCTGAAAGTAGGTCATAGTAGAAACCTTGGCG
TTTTCACTTCACTTAAGATTGCTACCCGGGGCTGCTATAGGTTTGCGGAA
TGATGGTCATGTGCCGCCCGAATATACCCGTACTCCCATTTTGCCTAGGT
ACCCCCCCCCACCCCCGGAGGGATTGCTTATACTTGCGAAATAAAATCCA
GAAAATTTCGTGATCTTTGGACTCGTTCACTCGATTTTAAATAAAGAATA
TTTTACTTTATCTTTTTTTTTACAGGTACGGTAGGAACTGCTATCGAATT
CGGAACGAATTCATCAAACGATTTGGCGACAAATTGCATTGTCTATGACA
GCGGAACCCAAAAGTTGGAATGGGATAATTGTAGAACTGAAC

Coding sequence (CDS) from alignment at sc0000093:14609..16450-

>TCONS_00009386 ID=TCONS_00009386|Name=TCONS_00009386|organism=Clytia hemisphaerica|type=CDS|length=1449bp|location=Sequence derived from alignment at sc0000093:14609..16450- (Clytia hemisphaerica)
GTACGGTAGGAACTGCTATCGAATTCGGAACGAATTCATCAAACGATTTG
GCGACAAATTGCATTGTCTATGACAGCGGAACCCAAAAGTTGGAATGGGA
TAATTGTAGAACTGAAGTTGCCAGATAGAAGGTGCTCCAGAAGATGGTTT
ATCAGTCTCCAGTACCAAATGTTTAAAGTTTCAAAAGTCGAGTGCAATAG
TGTTAGCTGAAGAAACATTTGGAGCTGGCATAAAACTGTGTGGCGAACAA
CGAGGACAACTAGTGCAATTCAAAAATATGACGGAATTCACTCAGTTCAA
ATCACTGTTTATAGGCAATGGGATTTTGTCTGATCGTGTTTGGGTCGGTG
CAAGTGATGCATTTGAGGAAGGGGTATTGAAGTGGCAAGATGGTGCCACA
AACAACAACAACGACCACCACCGCCGCAACAACACCCGCAACAACCACCA
CAATAACAACCGCAACGACCACCCCTGCTGCAGGTACGGTAGGAACTGCT
ATCGAATTCGGAACGAATTCATCAAACGATTTGGCGACAAATTGCATTGT
CTATGACAGCGGAACCCAAAAGTTGGAATGGGATAATTGTAGAACTGAAG
TTGCCAGATAGAAGGTGCTCCAGAAGATGGTTTATCAGTCTCCAGTACCA
AATGTTTAAAGTTTCAAAAGTCGAGTGCAATAGTGTTAGCTGAAGAAACA
TTTGGAGCTGGCATAAAACTGTGTGGCGAACAACGAGGACAACTAGTGCA
ATTCAAAAATATGACGGAATTCACTCAGTTCAAATCACTGTTTATAGGCA
ATGGGATTTTGTCTGATCGTGTTTGGGTCGGTGCAAGTGATGCATTTGAG
GAAGGGGTATTGAAGTGGCAAGATGGTGCCACAAACAACAACAACGACCA
CCACCGCCGCAACAACACCCGCAACAACCACCACAATAACAACCGCAACG
ACCACCCCTGCTGCAGGTACGGTAGGAACTGCTATCGAATTCGGAACGAA
TTCATCAAACGATTTGGCGACAAATTGCATTGTCTATGACAGCGGAACCC
AAAAGTTGGAATGGGATAATTGTAGAACTGAAGTTGCCAGATAGAAGGTG
CTCCAGAAGATGGTTTATCAGTCTCCAGTACCAAATGTTTAAAGTTTCAA
AAGTCGAGTGCAATAGTGTTAGCTGAAGAAACATTTGGAGCTGGCATAAA
ACTGTGTGGCGAACAACGAGGACAACTAGTGCAATTCAAAAATATGACGG
AATTCACTCAGTTCAAATCACTGTTTATAGGCAATGGGATTTTGTCTGAT
CGTGTTTGGGTCGGTGCAAGTGATGCATTTGAGGAAGGGGTATTGAAGTG
GCAAGATGGTGCCACAAACAACAACAACGACCACCACCGCCGCAACAACA
CCCGCAACAACCACCACAATAACAACCGCAACGACCACCCCTGCTGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005255XLOC_005255Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009386-proteinTCONS_00009386-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009386-exon-sc0000093-1575043694:16360..16450TCONS_00009386-exon-sc0000093-1575043694:16360..16450Clytia hemisphaericaexon
TCONS_00009386-exon-sc0000093-1575043694:15079..15354TCONS_00009386-exon-sc0000093-1575043694:15079..15354Clytia hemisphaericaexon
TCONS_00009386-exon-sc0000093-1575043694:14609..14725TCONS_00009386-exon-sc0000093-1575043694:14609..14725Clytia hemisphaericaexon
TCONS_00009386-exon-sc0000093-1510915933:16360..16450TCONS_00009386-exon-sc0000093-1510915933:16360..16450Clytia hemisphaericaexon
TCONS_00009386-exon-sc0000093-1510915933:15079..15354TCONS_00009386-exon-sc0000093-1510915933:15079..15354Clytia hemisphaericaexon
TCONS_00009386-exon-sc0000093-1510915933:14609..14725TCONS_00009386-exon-sc0000093-1510915933:14609..14725Clytia hemisphaericaexon
TCONS_00009386-exon-sc0000093-1491911889:16360..16450TCONS_00009386-exon-sc0000093-1491911889:16360..16450Clytia hemisphaericaexon
TCONS_00009386-exon-sc0000093-1491911889:15079..15354TCONS_00009386-exon-sc0000093-1491911889:15079..15354Clytia hemisphaericaexon
TCONS_00009386-exon-sc0000093-1491911889:14609..14725TCONS_00009386-exon-sc0000093-1491911889:14609..14725Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093supercontigsc0000093:14609..16450 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.25802	0.377415	0.584287	0	0.173977	0.137479	0.165863	0.310557	0.326143	0.13466	0.914931	0.4296	4.71903	3.65329	1.1721	1.65092	0.0968473	0.694858	6.17132	4.87926	0.498937	0.547569	0.443761	0.403443	1.38512	2.34876	0.176898	0.566372	0.143191	0.583556
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016186C-type_lectin-like/link
IPR001304C-type_lectin-like
IPR016187CTDL_fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009386 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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