|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009363 ID=TCONS_00009363|Name=TCONS_00009363|organism=Clytia hemisphaerica|type=transcript|length=2233bp
TGCATTAATTAGCCAAATTCATTAGACAAAATGGTAATTTATTACTGGGA
TTGGTCaatcaacaaaaacagaaaaattgtttcaaaaaatttctctcttt
gGTGGCTGTTTGCTTTATATGGAGAATTGTTTTGAATACTTATATGTGGT
TGTAATGTTGCAATAAAGTCATGTTTTGACTGACGTTAAGAAGAATTGAA
AGTGTAGTGTTAAAAGCTCAAGAAAACTTTACGAGAATGGGTGAAACAAG
CCGCCCTTTTATCAAAACGCCCATTGGCGTCACAATGTTGATTAATATTG
TTTTCCTTTTCATCACATGGTGTTTAATCATTAGTTGGAGGTATGGGGAC
GAGTTGCGTGAAAAATTAGCTGAAGAAATTGAGTGGAAAGTcaacttctt
tttcatttcgattttCATGGTTTGGATATTGATGTGTGTACTATTTGCAA
CCTTCAGCCTTGGTAAATGCATGAACCAAAGATGTTTTACAATGATGGTG
GTTCTTGGAGGATTGCTTGGAGCATTGGTCATTGTTGCAAGTGGATTCAT
TGCTTTGGAAGCTAAAAGACATAAATGTACTTTATGGAATTGTCGGATGG
TGGATGCGACAGCTGCATTTGGTTTCCTTTGTACTATTGGTTTGGTTGTC
CAAGCATTCATGTAtttcttttttcacatttataAACATCGAAGTTGAAT
ATCATTTCTTTCTCCGACGAATCACTTACTCCAGTGTGTTATATATGAAG
CTTTCTAGAGATTTTCGAAACGATAGGATTAAAGTAATGGGATTTTGATA
ACTTTGGTTTTGGTAATGGATTCATAATAACAACAAAGGATTACACCTAT
TACAATATCGGAGAAGCTCTAGAGAAAGAGACTTTGAATATAAAGTTATG
GAACAATGGACTCTTctagaaaatatttgaatattgGGAGcaggaggata
taacattttttgaattttacacGCCGAagattgtgacttttgacccaaCG
GGCAGTATAATTCTCagccccctggacaagcatcaattgacccccggaca
ttcaaaatcacccaTAATCAGAGCAGATTTTTCTCCTAGACAAGgcaaat
ttagatttttcactaccccccccccagactatatatcctccacccccatg
tacgaacatttccTGGAAGTGCTTCTTAAGGTAAGTCAGATCATCAATTG
TAATATTTATGTACAATGACTTTGGTTTTCTAAGATGAAAACCTAATAAT
GTTTTCCACTATAAGTATAAAaactaaatattttcaattttattataAAT
ACCTAAATATTCTAACGTCACGTCCAAACAAAGATGTATGTTTTTTCACC
AGGTACGTTCGGGCCATAGCCCTATACAACCTATCAACCTTTAGGGCCGG
TctctggggggggggcatttgCCCACCTGCaccctgccaccacgccactt
TACAAGACCCCTTAAAAGAAAATCGCGTCGTTAAGGGTTTATGGATGCAT
TTAATTATATAGTTGTGCAGTTTCTTTACTTTACGGTTGACAACATTTCT
AACACCACCATGTCCATATTAGCAAGTGTATGTATTGGAGGAGATCGAGG
GAAACGGTAAGTGAAGTTAACataaaacaaagtcgatagttgaagTACGG
CtcatatcgcctttgctcacctaaccAGACgtagtctttttttttttacc
tttgtCCAGCTATTTTGGGAACATGCCAACTATgccataccttatcgggg
aaaataccttatcggggaaaactttgtcggggaaaagtgacgaaattttg
gacaagtgacgaatattttccccaaCGATAATTTCCCCCgcccttaatgc
gtttaccaactaccagcaagtaacgaatttttcccgacgaaaattttccc
cgacgaagttttccccgataaggtataccgtctccttcgatacatctcga
atacataaactagCTATAACGGGTGCGAGATGGATGTTATGAACGATAAA
TGGACGTTGTATTGCTGTTTTGGTACCAGCTATGGAAACATCAATACTTT
TTTGCTTTGGGGTTTGGAGATTTCTTCAGCTTCAAATCCCTCTTCCTTTA
GTCATTTTGCTATATGGAGCGCTTTCTTTACAACAGCGATTTTTCTTTAG
TACTCTTAAGTGAAGATACGCCTGAACTGCAAGTGATAGACCACCAATTA
TACCAAGACTTGcctgaaatagaaaaatatatt Run BLAST on NCBI protein sequence of TCONS_00009363-protein >TCONS_00009363-protein ID=TCONS_00009363-protein|Name=TCONS_00009363-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MGETSRPFIKTPIGVTMLINIVFLFITWCLIISWRYGDELREKLAEEIEW
KVNFFFISIFMVWILMCVLFATFSLGKCMNQRCFTMMVVLGGLLGALVIV
ASGFIALEAKRHKCTLWNCRMVDATAAFGFLCTIGLVVQAFMYFFFHIYK
HRS Run BLAST on NCBI transcript from alignment at sc0000093:429090..433134+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009363 ID=TCONS_00009363|Name=TCONS_00009363|organism=Clytia hemisphaerica|type=transcript|length=4045bp|location=Sequence derived from alignment at sc0000093:429090..433134+ (Clytia hemisphaerica)
TGCATTAATTAGCCAAATTCATTAGACAAAATGGTAATTTATTACTGGGA
TTGGTCaatcaacaaaaacagaaaaattgtttcaaaaaatttctctcttt
gGTGGCTGTTTGCTTTATATGGAGAATTGTTTTGAATACTTATATGTGGT
TGTAATGTTGCAATAAAGTCATGTTTTGACTGACGTTAAGAAGAATTGAA
AGTGTAGTGGtaagattttttgatttgttgaGATTTATAATATCGTAACT
GAgagacaatttattttattttttttttcaaaaaaaagtggaTTCTCCAA
ATTCAACCTATGGGTTTTAGGTTTTGTATTGCAGTTAAGTCTTCAaaact
cgaacttctataacttgtcgaatgtctccttaacttggTTTTCCTCGTCC
CGTTCCGTGATGCGTGCTCGAGTTTTTGAGACTCTGCTGTACTGTAATAT
TACCGCTTTTGTTGACCAtcttttttaagcattttaaagctctCCTTCTT
ACCTTTTTCCCATAGTTAAAAGCTCAAGAAAACTTTACGAGAATGGGTGA
AACAAGCCGCCCTTTTATCAAAACGCCCATTGGCGTCACAATGTTGATTA
ATATTGTAAGTATACACATTTGTTTGTATTGAGCAAAGATCGTTGTTAAA
ATTTGTATAATGTCCTTAGCCAATGGTTCTCTGAAATCACGATTTCACGA
TTTAATGAACCCTTCTAGGGAGTTCTActatttcgaaatttttgaatttt
tcttttgtcgAAATTATGCGAATAAAGTGACCCTAGATGAGACTAGAATC
ACATGCTGCTTTTCCAGGCTAACTTCGTAATATACAGTTTacattctcta
attcgacgttctgcTATTCGATACggtccattattcgataatagcgagtt
tatgtatttgcacttttgaggatgttaaagtgactgaagcgatttagaaa
aATACCCGCAAAATCGaagacggtaaaagtgctgatttaccgttgtcctc
agctggtcaggatctagtcaaattagaaccttaccgtctccgtcacagaa
aacacgtatacataaactcggttaTATTGAAAGTGAACATCAaaaagaaa
ctctcatataaatGACGCTTAGAATCTAATTTCCTTTTAAGATCAAGTTA
GAGTGCGTCAACTGTATTCATATATGTTTCTATTTATATTGATTTCTTAT
TCCAGGTTTTCCTTTTCATCACATGGTGTTTAATCATTAGTTGGAGGTAT
GGGGACGAGTTGCGTGAAAAATTAGCTGAAGAAATTGAGTGGAAAGTcaa
cttctttttcatttcgattttCATGGTTTGGATATTGATGTGTGTACTAT
TTGCAACCTTCAGCCTTGGTAAATGCATGAACCAAAGATGTTTTACAATG
GTGAGTTTACCTGAGCATCTGGTAATGACTCTTGGTTCTTGTCTCGGTCT
GCGTTTACACGTTTTTAAgcattgggctattccaaaagATTTGTaacccc
tatgttgaggagatcttttttttaaaggtgacccccctggatttttttcc
caatttttcaggAACCCTGCTAGACTTTTTTCTCCCTTttctttggacca
ccctggattttcgacctcgttaaactgaccaccctggattttatcattca
aaaaaacTAGACCAccttggattttttattttccagaccaccctggacat
tacacctcctcaacatagttATGTGATGATGAAATTTAAGAATCTGGTAT
TATTTCTTAATTCATCGATTTCTTTATTGCAATTCCACTTTATAGATGGT
GGTTCTTGGAGGATTGCTTGGAGCATTGGTCATTGTTGCAAGTGGATTCA
TTGCTTTGGAAGCTAAAAGACATAAATGTACTTTATGGAATTGTCGGATG
GTGGATGCGACAGCTGTAAGTTGTccttcgtttaaaaaatttgaaacgta
GAACCTTTGTTAGCCAGGGTCGTGCATTTGCACATTTGTAGTAAGAGAAA
GTTATAAATCTTGGACTTTTAAACGGTCGGTCCATGACCGGTCTGCTCAG
CTTATTTTGAACTGGATGGATTATGGAAGGAGGGAGGTTTTGAACCGGTA
ACCGCCGTTCTAGGATTGTGATGCTGACTTTTTTCTAACAcctaattttg
ttttttattttgataccgtgagatcgggtaacttgcatcagtggaggcta
acatgcacagccctcaaatgaatgaccaatcaaaggagcaaaatttcaaa
acaaatgaactacgcagctccgctcgcagctctactctaccatttttgtt
ttgatttaactttgtattttaaggaccagccaggtcattcatttgagggc
tatgcatgttagcctccactgatgttACCCAACTTCACGATAGTTCATTA
ATAAGAAATGTTTTCCCACCTTTTAGGCATTTGGTTTCCTTTGTACTATT
GGTTTGGTTGTCCAAGCATTCATGTAtttcttttttcacatttataAACA
TCGAAGTTGAATATCATTTCTTTCTCCGACGAATCACTTACTCCAGTGTG
TTATATATGAAGCTTTCTAGAGATTTTCGAAACGATAGGATTAAAGTAAT
GGGATTTTGATAACTTTGGTTTTGGTAATGGATTCATAATAACAACAAAG
GATTACACCTATTACAATATCGGAGAAGCTCTAGAGAAAGAGACTTTGAA
TATAAAGTTATGGAACAATGGACTCTTctagaaaatatttgaatattgGG
AGcaggaggatataacattttttgaattttacacGCCGAagattgtgact
tttgacccaaCGGGCAGTATAATTCTCagccccctggacaagcatcaatt
gacccccggacattcaaaatcacccaTAATCAGAGCAGATTTTTCTCCTA
GACAAGgcaaatttagatttttcactaccccccccccagactatatatcc
tccacccccatgtacgaacatttccTGGAAGTGCTTCTTAAGGTAAGTCA
GATCATCAATTGTAATATTTATGTACAATGACTTTGGTTTTCTAAGATGA
AAACCTAATAATGTTTTCCACTATAAGTATAAAaactaaatattttcaat
tttattataAATACCTAAATATTCTAACGTCACGTCCAAACAAAGATGTA
TGTTTTTTCACCAGGTACGTTCGGGCCATAGCCCTATACAACCTATCAAC
CTTTAGGGCCGGTctctggggggggggcatttgCCCACCTGCaccctgcc
accacgccacttTACAAGACCCCTTAAAAGAAAATCGCGTCGTTAAGGGT
TTATGGATGCATTTAATTATATAGTTGTGCAGTTTCTTTACTTTACGGTT
GACAACATTTCTAACACCACCATGTCCATATTAGCAAGTGTATGTATTGG
AGGAGATCGAGGGAAACGGTAAGTGAAGTTAACataaaacaaagtcgata
gttgaagTACGGCtcatatcgcctttgctcacctaaccAGACgtagtctt
tttttttttacctttgtCCAGCTATTTTGGGAACATGCCAACTATgccat
accttatcggggaaaataccttatcggggaaaactttgtcggggaaaagt
gacgaaattttggacaagtgacgaatattttccccaaCGATAATTTCCCC
Cgcccttaatgcgtttaccaactaccagcaagtaacgaatttttcccgac
gaaaattttccccgacgaagttttccccgataaggtataccgtctccttc
gatacatctcgaatacataaactagCTATAACGGGTGCGAGATGGATGTT
ATGAACGATAAATGGACGTTGTATTGCTGTTTTGGTACCAGCTATGGAAA
CATCAATACTTTTTTGCTTTGGGGTTTGGAGATTTCTTCAGCTTCAAATC
CCTCTTCCTTTAGTCATTTTGCTATATGGAGCGCTTTCTTTACAACAGCG
ATTTTTCTTTAGTACTCTTAAGTGAAGATACGCCTGAACTGCAAGTGATA
GACCACCAATTATACCAAGACTTGcctgaaatagaaaaatatatt Coding sequence (CDS) from alignment at sc0000093:429090..433134+ >TCONS_00009363 ID=TCONS_00009363|Name=TCONS_00009363|organism=Clytia hemisphaerica|type=CDS|length=1848bp|location=Sequence derived from alignment at sc0000093:429090..433134+ (Clytia hemisphaerica)
ATGGGTGAAACAAGCCGCCCTTTTATCAAAACGCCCATTGGCGTCACAAT
GTTGATTAATATTGTTTTCCTTTTCATCACATGGTGTTTAATCATTAGTT
GGAGGTATGGGGACGAGTTGCGTGAAAAATTAGCTGAAGAAATTGAGTGG
AAAGTcaacttctttttcatttcgattttCATGGTTTGGATATTGATGTG
TGTACTATTTGCAACCTTCAGCCTTGGTAAATGCATGAACCAAAGATGTT
TTACAATGATGGTGGTTCTTGGAGGATTGCTTGGAGCATTGGTCATTGTT
GCAAGTGGATTCATTGCTTTGGAAGCTAAAAGACATAAATGTACTTTATG
GAATTGTCGGATGGTGGATGCGACAGCTGCATTTGGTTTCCTTTGTACTA
TTGGTTTGGTTGTCCAAGCATTCATGTAtttcttttttcacatttataAA
CATCGAAGTTGAATGGGTGAAACAAGCCGCCCTTTTATCAAAACGCCCAT
TGGCGTCACAATGTTGATTAATATTGTTTTCCTTTTCATCACATGGTGTT
TAATCATTAGTTGGAGGTATGGGGACGAGTTGCGTGAAAAATTAGCTGAA
GAAATTGAGTGGAAAGTcaacttctttttcatttcgattttCATGGTTTG
GATATTGATGTGTGTACTATTTGCAACCTTCAGCCTTGGTAAATGCATGA
ACCAAAGATGTTTTACAATGATGGTGGTTCTTGGAGGATTGCTTGGAGCA
TTGGTCATTGTTGCAAGTGGATTCATTGCTTTGGAAGCTAAAAGACATAA
ATGTACTTTATGGAATTGTCGGATGGTGGATGCGACAGCTGCATTTGGTT
TCCTTTGTACTATTGGTTTGGTTGTCCAAGCATTCATGTAtttctttttt
cacatttataAACATCGAAGTTGAATGGGTGAAACAAGCCGCCCTTTTAT
CAAAACGCCCATTGGCGTCACAATGTTGATTAATATTGTTTTCCTTTTCA
TCACATGGTGTTTAATCATTAGTTGGAGGTATGGGGACGAGTTGCGTGAA
AAATTAGCTGAAGAAATTGAGTGGAAAGTcaacttctttttcatttcgat
tttCATGGTTTGGATATTGATGTGTGTACTATTTGCAACCTTCAGCCTTG
GTAAATGCATGAACCAAAGATGTTTTACAATGATGGTGGTTCTTGGAGGA
TTGCTTGGAGCATTGGTCATTGTTGCAAGTGGATTCATTGCTTTGGAAGC
TAAAAGACATAAATGTACTTTATGGAATTGTCGGATGGTGGATGCGACAG
CTGCATTTGGTTTCCTTTGTACTATTGGTTTGGTTGTCCAAGCATTCATG
TAtttcttttttcacatttataAACATCGAAGTTGAATGGGTGAAACAAG
CCGCCCTTTTATCAAAACGCCCATTGGCGTCACAATGTTGATTAATATTG
TTTTCCTTTTCATCACATGGTGTTTAATCATTAGTTGGAGGTATGGGGAC
GAGTTGCGTGAAAAATTAGCTGAAGAAATTGAGTGGAAAGTcaacttctt
tttcatttcgattttCATGGTTTGGATATTGATGTGTGTACTATTTGCAA
CCTTCAGCCTTGGTAAATGCATGAACCAAAGATGTTTTACAATGATGGTG
GTTCTTGGAGGATTGCTTGGAGCATTGGTCATTGTTGCAAGTGGATTCAT
TGCTTTGGAAGCTAAAAGACATAAATGTACTTTATGGAATTGTCGGATGG
TGGATGCGACAGCTGCATTTGGTTTCCTTTGTACTATTGGTTTGGTTGTC
CAAGCATTCATGTAtttcttttttcacatttataAACATCGAAGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009363-exon-sc0000093-1491911889:429090..429298 | TCONS_00009363-exon-sc0000093-1491911889:429090..429298 | Clytia hemisphaerica | exon |
| TCONS_00009363-exon-sc0000093-1510915933:429090..429298 | TCONS_00009363-exon-sc0000093-1510915933:429090..429298 | Clytia hemisphaerica | exon |
| TCONS_00009363-exon-sc0000093-1575043694:429090..429298 | TCONS_00009363-exon-sc0000093-1575043694:429090..429298 | Clytia hemisphaerica | exon |
| TCONS_00009363-exon-sc0000093-1491911889:429605..429694 | TCONS_00009363-exon-sc0000093-1491911889:429605..429694 | Clytia hemisphaerica | exon |
| TCONS_00009363-exon-sc0000093-1510915933:429605..429694 | TCONS_00009363-exon-sc0000093-1510915933:429605..429694 | Clytia hemisphaerica | exon |
| TCONS_00009363-exon-sc0000093-1575043694:429605..429694 | TCONS_00009363-exon-sc0000093-1575043694:429605..429694 | Clytia hemisphaerica | exon |
| TCONS_00009363-exon-sc0000093-1491911889:430295..430489 | TCONS_00009363-exon-sc0000093-1491911889:430295..430489 | Clytia hemisphaerica | exon |
| TCONS_00009363-exon-sc0000093-1510915933:430295..430489 | TCONS_00009363-exon-sc0000093-1510915933:430295..430489 | Clytia hemisphaerica | exon |
| TCONS_00009363-exon-sc0000093-1575043694:430295..430489 | TCONS_00009363-exon-sc0000093-1575043694:430295..430489 | Clytia hemisphaerica | exon |
| TCONS_00009363-exon-sc0000093-1491911889:430885..431004 | TCONS_00009363-exon-sc0000093-1491911889:430885..431004 | Clytia hemisphaerica | exon |
| TCONS_00009363-exon-sc0000093-1510915933:430885..431004 | TCONS_00009363-exon-sc0000093-1510915933:430885..431004 | Clytia hemisphaerica | exon |
| TCONS_00009363-exon-sc0000093-1575043694:430885..431004 | TCONS_00009363-exon-sc0000093-1575043694:430885..431004 | Clytia hemisphaerica | exon |
| TCONS_00009363-exon-sc0000093-1491911889:431516..433134 | TCONS_00009363-exon-sc0000093-1491911889:431516..433134 | Clytia hemisphaerica | exon |
| TCONS_00009363-exon-sc0000093-1510915933:431516..433134 | TCONS_00009363-exon-sc0000093-1510915933:431516..433134 | Clytia hemisphaerica | exon |
| TCONS_00009363-exon-sc0000093-1575043694:431516..433134 | TCONS_00009363-exon-sc0000093-1575043694:431516..433134 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000093 | supercontig | sc0000093:429090..433134 + |
Blast
The following BLAST results are available for this feature:
|
