TCONS_00009363 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009363
Unique NameTCONS_00009363
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2233

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009363 ID=TCONS_00009363|Name=TCONS_00009363|organism=Clytia hemisphaerica|type=transcript|length=2233bp
TGCATTAATTAGCCAAATTCATTAGACAAAATGGTAATTTATTACTGGGA
TTGGTCaatcaacaaaaacagaaaaattgtttcaaaaaatttctctcttt
gGTGGCTGTTTGCTTTATATGGAGAATTGTTTTGAATACTTATATGTGGT
TGTAATGTTGCAATAAAGTCATGTTTTGACTGACGTTAAGAAGAATTGAA
AGTGTAGTGTTAAAAGCTCAAGAAAACTTTACGAGAATGGGTGAAACAAG
CCGCCCTTTTATCAAAACGCCCATTGGCGTCACAATGTTGATTAATATTG
TTTTCCTTTTCATCACATGGTGTTTAATCATTAGTTGGAGGTATGGGGAC
GAGTTGCGTGAAAAATTAGCTGAAGAAATTGAGTGGAAAGTcaacttctt
tttcatttcgattttCATGGTTTGGATATTGATGTGTGTACTATTTGCAA
CCTTCAGCCTTGGTAAATGCATGAACCAAAGATGTTTTACAATGATGGTG
GTTCTTGGAGGATTGCTTGGAGCATTGGTCATTGTTGCAAGTGGATTCAT
TGCTTTGGAAGCTAAAAGACATAAATGTACTTTATGGAATTGTCGGATGG
TGGATGCGACAGCTGCATTTGGTTTCCTTTGTACTATTGGTTTGGTTGTC
CAAGCATTCATGTAtttcttttttcacatttataAACATCGAAGTTGAAT
ATCATTTCTTTCTCCGACGAATCACTTACTCCAGTGTGTTATATATGAAG
CTTTCTAGAGATTTTCGAAACGATAGGATTAAAGTAATGGGATTTTGATA
ACTTTGGTTTTGGTAATGGATTCATAATAACAACAAAGGATTACACCTAT
TACAATATCGGAGAAGCTCTAGAGAAAGAGACTTTGAATATAAAGTTATG
GAACAATGGACTCTTctagaaaatatttgaatattgGGAGcaggaggata
taacattttttgaattttacacGCCGAagattgtgacttttgacccaaCG
GGCAGTATAATTCTCagccccctggacaagcatcaattgacccccggaca
ttcaaaatcacccaTAATCAGAGCAGATTTTTCTCCTAGACAAGgcaaat
ttagatttttcactaccccccccccagactatatatcctccacccccatg
tacgaacatttccTGGAAGTGCTTCTTAAGGTAAGTCAGATCATCAATTG
TAATATTTATGTACAATGACTTTGGTTTTCTAAGATGAAAACCTAATAAT
GTTTTCCACTATAAGTATAAAaactaaatattttcaattttattataAAT
ACCTAAATATTCTAACGTCACGTCCAAACAAAGATGTATGTTTTTTCACC
AGGTACGTTCGGGCCATAGCCCTATACAACCTATCAACCTTTAGGGCCGG
TctctggggggggggcatttgCCCACCTGCaccctgccaccacgccactt
TACAAGACCCCTTAAAAGAAAATCGCGTCGTTAAGGGTTTATGGATGCAT
TTAATTATATAGTTGTGCAGTTTCTTTACTTTACGGTTGACAACATTTCT
AACACCACCATGTCCATATTAGCAAGTGTATGTATTGGAGGAGATCGAGG
GAAACGGTAAGTGAAGTTAACataaaacaaagtcgatagttgaagTACGG
CtcatatcgcctttgctcacctaaccAGACgtagtctttttttttttacc
tttgtCCAGCTATTTTGGGAACATGCCAACTATgccataccttatcgggg
aaaataccttatcggggaaaactttgtcggggaaaagtgacgaaattttg
gacaagtgacgaatattttccccaaCGATAATTTCCCCCgcccttaatgc
gtttaccaactaccagcaagtaacgaatttttcccgacgaaaattttccc
cgacgaagttttccccgataaggtataccgtctccttcgatacatctcga
atacataaactagCTATAACGGGTGCGAGATGGATGTTATGAACGATAAA
TGGACGTTGTATTGCTGTTTTGGTACCAGCTATGGAAACATCAATACTTT
TTTGCTTTGGGGTTTGGAGATTTCTTCAGCTTCAAATCCCTCTTCCTTTA
GTCATTTTGCTATATGGAGCGCTTTCTTTACAACAGCGATTTTTCTTTAG
TACTCTTAAGTGAAGATACGCCTGAACTGCAAGTGATAGACCACCAATTA
TACCAAGACTTGcctgaaatagaaaaatatatt
Run BLAST on NCBI

protein sequence of TCONS_00009363-protein

>TCONS_00009363-protein ID=TCONS_00009363-protein|Name=TCONS_00009363-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MGETSRPFIKTPIGVTMLINIVFLFITWCLIISWRYGDELREKLAEEIEW
KVNFFFISIFMVWILMCVLFATFSLGKCMNQRCFTMMVVLGGLLGALVIV
ASGFIALEAKRHKCTLWNCRMVDATAAFGFLCTIGLVVQAFMYFFFHIYK
HRS
Run BLAST on NCBI

transcript from alignment at sc0000093:429090..433134+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009363 ID=TCONS_00009363|Name=TCONS_00009363|organism=Clytia hemisphaerica|type=transcript|length=4045bp|location=Sequence derived from alignment at sc0000093:429090..433134+ (Clytia hemisphaerica)
TGCATTAATTAGCCAAATTCATTAGACAAAATGGTAATTTATTACTGGGA
TTGGTCaatcaacaaaaacagaaaaattgtttcaaaaaatttctctcttt
gGTGGCTGTTTGCTTTATATGGAGAATTGTTTTGAATACTTATATGTGGT
TGTAATGTTGCAATAAAGTCATGTTTTGACTGACGTTAAGAAGAATTGAA
AGTGTAGTGGtaagattttttgatttgttgaGATTTATAATATCGTAACT
GAgagacaatttattttattttttttttcaaaaaaaagtggaTTCTCCAA
ATTCAACCTATGGGTTTTAGGTTTTGTATTGCAGTTAAGTCTTCAaaact
cgaacttctataacttgtcgaatgtctccttaacttggTTTTCCTCGTCC
CGTTCCGTGATGCGTGCTCGAGTTTTTGAGACTCTGCTGTACTGTAATAT
TACCGCTTTTGTTGACCAtcttttttaagcattttaaagctctCCTTCTT
ACCTTTTTCCCATAGTTAAAAGCTCAAGAAAACTTTACGAGAATGGGTGA
AACAAGCCGCCCTTTTATCAAAACGCCCATTGGCGTCACAATGTTGATTA
ATATTGTAAGTATACACATTTGTTTGTATTGAGCAAAGATCGTTGTTAAA
ATTTGTATAATGTCCTTAGCCAATGGTTCTCTGAAATCACGATTTCACGA
TTTAATGAACCCTTCTAGGGAGTTCTActatttcgaaatttttgaatttt
tcttttgtcgAAATTATGCGAATAAAGTGACCCTAGATGAGACTAGAATC
ACATGCTGCTTTTCCAGGCTAACTTCGTAATATACAGTTTacattctcta
attcgacgttctgcTATTCGATACggtccattattcgataatagcgagtt
tatgtatttgcacttttgaggatgttaaagtgactgaagcgatttagaaa
aATACCCGCAAAATCGaagacggtaaaagtgctgatttaccgttgtcctc
agctggtcaggatctagtcaaattagaaccttaccgtctccgtcacagaa
aacacgtatacataaactcggttaTATTGAAAGTGAACATCAaaaagaaa
ctctcatataaatGACGCTTAGAATCTAATTTCCTTTTAAGATCAAGTTA
GAGTGCGTCAACTGTATTCATATATGTTTCTATTTATATTGATTTCTTAT
TCCAGGTTTTCCTTTTCATCACATGGTGTTTAATCATTAGTTGGAGGTAT
GGGGACGAGTTGCGTGAAAAATTAGCTGAAGAAATTGAGTGGAAAGTcaa
cttctttttcatttcgattttCATGGTTTGGATATTGATGTGTGTACTAT
TTGCAACCTTCAGCCTTGGTAAATGCATGAACCAAAGATGTTTTACAATG
GTGAGTTTACCTGAGCATCTGGTAATGACTCTTGGTTCTTGTCTCGGTCT
GCGTTTACACGTTTTTAAgcattgggctattccaaaagATTTGTaacccc
tatgttgaggagatcttttttttaaaggtgacccccctggatttttttcc
caatttttcaggAACCCTGCTAGACTTTTTTCTCCCTTttctttggacca
ccctggattttcgacctcgttaaactgaccaccctggattttatcattca
aaaaaacTAGACCAccttggattttttattttccagaccaccctggacat
tacacctcctcaacatagttATGTGATGATGAAATTTAAGAATCTGGTAT
TATTTCTTAATTCATCGATTTCTTTATTGCAATTCCACTTTATAGATGGT
GGTTCTTGGAGGATTGCTTGGAGCATTGGTCATTGTTGCAAGTGGATTCA
TTGCTTTGGAAGCTAAAAGACATAAATGTACTTTATGGAATTGTCGGATG
GTGGATGCGACAGCTGTAAGTTGTccttcgtttaaaaaatttgaaacgta
GAACCTTTGTTAGCCAGGGTCGTGCATTTGCACATTTGTAGTAAGAGAAA
GTTATAAATCTTGGACTTTTAAACGGTCGGTCCATGACCGGTCTGCTCAG
CTTATTTTGAACTGGATGGATTATGGAAGGAGGGAGGTTTTGAACCGGTA
ACCGCCGTTCTAGGATTGTGATGCTGACTTTTTTCTAACAcctaattttg
ttttttattttgataccgtgagatcgggtaacttgcatcagtggaggcta
acatgcacagccctcaaatgaatgaccaatcaaaggagcaaaatttcaaa
acaaatgaactacgcagctccgctcgcagctctactctaccatttttgtt
ttgatttaactttgtattttaaggaccagccaggtcattcatttgagggc
tatgcatgttagcctccactgatgttACCCAACTTCACGATAGTTCATTA
ATAAGAAATGTTTTCCCACCTTTTAGGCATTTGGTTTCCTTTGTACTATT
GGTTTGGTTGTCCAAGCATTCATGTAtttcttttttcacatttataAACA
TCGAAGTTGAATATCATTTCTTTCTCCGACGAATCACTTACTCCAGTGTG
TTATATATGAAGCTTTCTAGAGATTTTCGAAACGATAGGATTAAAGTAAT
GGGATTTTGATAACTTTGGTTTTGGTAATGGATTCATAATAACAACAAAG
GATTACACCTATTACAATATCGGAGAAGCTCTAGAGAAAGAGACTTTGAA
TATAAAGTTATGGAACAATGGACTCTTctagaaaatatttgaatattgGG
AGcaggaggatataacattttttgaattttacacGCCGAagattgtgact
tttgacccaaCGGGCAGTATAATTCTCagccccctggacaagcatcaatt
gacccccggacattcaaaatcacccaTAATCAGAGCAGATTTTTCTCCTA
GACAAGgcaaatttagatttttcactaccccccccccagactatatatcc
tccacccccatgtacgaacatttccTGGAAGTGCTTCTTAAGGTAAGTCA
GATCATCAATTGTAATATTTATGTACAATGACTTTGGTTTTCTAAGATGA
AAACCTAATAATGTTTTCCACTATAAGTATAAAaactaaatattttcaat
tttattataAATACCTAAATATTCTAACGTCACGTCCAAACAAAGATGTA
TGTTTTTTCACCAGGTACGTTCGGGCCATAGCCCTATACAACCTATCAAC
CTTTAGGGCCGGTctctggggggggggcatttgCCCACCTGCaccctgcc
accacgccacttTACAAGACCCCTTAAAAGAAAATCGCGTCGTTAAGGGT
TTATGGATGCATTTAATTATATAGTTGTGCAGTTTCTTTACTTTACGGTT
GACAACATTTCTAACACCACCATGTCCATATTAGCAAGTGTATGTATTGG
AGGAGATCGAGGGAAACGGTAAGTGAAGTTAACataaaacaaagtcgata
gttgaagTACGGCtcatatcgcctttgctcacctaaccAGACgtagtctt
tttttttttacctttgtCCAGCTATTTTGGGAACATGCCAACTATgccat
accttatcggggaaaataccttatcggggaaaactttgtcggggaaaagt
gacgaaattttggacaagtgacgaatattttccccaaCGATAATTTCCCC
Cgcccttaatgcgtttaccaactaccagcaagtaacgaatttttcccgac
gaaaattttccccgacgaagttttccccgataaggtataccgtctccttc
gatacatctcgaatacataaactagCTATAACGGGTGCGAGATGGATGTT
ATGAACGATAAATGGACGTTGTATTGCTGTTTTGGTACCAGCTATGGAAA
CATCAATACTTTTTTGCTTTGGGGTTTGGAGATTTCTTCAGCTTCAAATC
CCTCTTCCTTTAGTCATTTTGCTATATGGAGCGCTTTCTTTACAACAGCG
ATTTTTCTTTAGTACTCTTAAGTGAAGATACGCCTGAACTGCAAGTGATA
GACCACCAATTATACCAAGACTTGcctgaaatagaaaaatatatt

Coding sequence (CDS) from alignment at sc0000093:429090..433134+

>TCONS_00009363 ID=TCONS_00009363|Name=TCONS_00009363|organism=Clytia hemisphaerica|type=CDS|length=1848bp|location=Sequence derived from alignment at sc0000093:429090..433134+ (Clytia hemisphaerica)
ATGGGTGAAACAAGCCGCCCTTTTATCAAAACGCCCATTGGCGTCACAAT
GTTGATTAATATTGTTTTCCTTTTCATCACATGGTGTTTAATCATTAGTT
GGAGGTATGGGGACGAGTTGCGTGAAAAATTAGCTGAAGAAATTGAGTGG
AAAGTcaacttctttttcatttcgattttCATGGTTTGGATATTGATGTG
TGTACTATTTGCAACCTTCAGCCTTGGTAAATGCATGAACCAAAGATGTT
TTACAATGATGGTGGTTCTTGGAGGATTGCTTGGAGCATTGGTCATTGTT
GCAAGTGGATTCATTGCTTTGGAAGCTAAAAGACATAAATGTACTTTATG
GAATTGTCGGATGGTGGATGCGACAGCTGCATTTGGTTTCCTTTGTACTA
TTGGTTTGGTTGTCCAAGCATTCATGTAtttcttttttcacatttataAA
CATCGAAGTTGAATGGGTGAAACAAGCCGCCCTTTTATCAAAACGCCCAT
TGGCGTCACAATGTTGATTAATATTGTTTTCCTTTTCATCACATGGTGTT
TAATCATTAGTTGGAGGTATGGGGACGAGTTGCGTGAAAAATTAGCTGAA
GAAATTGAGTGGAAAGTcaacttctttttcatttcgattttCATGGTTTG
GATATTGATGTGTGTACTATTTGCAACCTTCAGCCTTGGTAAATGCATGA
ACCAAAGATGTTTTACAATGATGGTGGTTCTTGGAGGATTGCTTGGAGCA
TTGGTCATTGTTGCAAGTGGATTCATTGCTTTGGAAGCTAAAAGACATAA
ATGTACTTTATGGAATTGTCGGATGGTGGATGCGACAGCTGCATTTGGTT
TCCTTTGTACTATTGGTTTGGTTGTCCAAGCATTCATGTAtttctttttt
cacatttataAACATCGAAGTTGAATGGGTGAAACAAGCCGCCCTTTTAT
CAAAACGCCCATTGGCGTCACAATGTTGATTAATATTGTTTTCCTTTTCA
TCACATGGTGTTTAATCATTAGTTGGAGGTATGGGGACGAGTTGCGTGAA
AAATTAGCTGAAGAAATTGAGTGGAAAGTcaacttctttttcatttcgat
tttCATGGTTTGGATATTGATGTGTGTACTATTTGCAACCTTCAGCCTTG
GTAAATGCATGAACCAAAGATGTTTTACAATGATGGTGGTTCTTGGAGGA
TTGCTTGGAGCATTGGTCATTGTTGCAAGTGGATTCATTGCTTTGGAAGC
TAAAAGACATAAATGTACTTTATGGAATTGTCGGATGGTGGATGCGACAG
CTGCATTTGGTTTCCTTTGTACTATTGGTTTGGTTGTCCAAGCATTCATG
TAtttcttttttcacatttataAACATCGAAGTTGAATGGGTGAAACAAG
CCGCCCTTTTATCAAAACGCCCATTGGCGTCACAATGTTGATTAATATTG
TTTTCCTTTTCATCACATGGTGTTTAATCATTAGTTGGAGGTATGGGGAC
GAGTTGCGTGAAAAATTAGCTGAAGAAATTGAGTGGAAAGTcaacttctt
tttcatttcgattttCATGGTTTGGATATTGATGTGTGTACTATTTGCAA
CCTTCAGCCTTGGTAAATGCATGAACCAAAGATGTTTTACAATGATGGTG
GTTCTTGGAGGATTGCTTGGAGCATTGGTCATTGTTGCAAGTGGATTCAT
TGCTTTGGAAGCTAAAAGACATAAATGTACTTTATGGAATTGTCGGATGG
TGGATGCGACAGCTGCATTTGGTTTCCTTTGTACTATTGGTTTGGTTGTC
CAAGCATTCATGTAtttcttttttcacatttataAACATCGAAGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005245XLOC_005245Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009363-exon-sc0000093-1491911889:429090..429298TCONS_00009363-exon-sc0000093-1491911889:429090..429298Clytia hemisphaericaexon
TCONS_00009363-exon-sc0000093-1510915933:429090..429298TCONS_00009363-exon-sc0000093-1510915933:429090..429298Clytia hemisphaericaexon
TCONS_00009363-exon-sc0000093-1575043694:429090..429298TCONS_00009363-exon-sc0000093-1575043694:429090..429298Clytia hemisphaericaexon
TCONS_00009363-exon-sc0000093-1491911889:429605..429694TCONS_00009363-exon-sc0000093-1491911889:429605..429694Clytia hemisphaericaexon
TCONS_00009363-exon-sc0000093-1510915933:429605..429694TCONS_00009363-exon-sc0000093-1510915933:429605..429694Clytia hemisphaericaexon
TCONS_00009363-exon-sc0000093-1575043694:429605..429694TCONS_00009363-exon-sc0000093-1575043694:429605..429694Clytia hemisphaericaexon
TCONS_00009363-exon-sc0000093-1491911889:430295..430489TCONS_00009363-exon-sc0000093-1491911889:430295..430489Clytia hemisphaericaexon
TCONS_00009363-exon-sc0000093-1510915933:430295..430489TCONS_00009363-exon-sc0000093-1510915933:430295..430489Clytia hemisphaericaexon
TCONS_00009363-exon-sc0000093-1575043694:430295..430489TCONS_00009363-exon-sc0000093-1575043694:430295..430489Clytia hemisphaericaexon
TCONS_00009363-exon-sc0000093-1491911889:430885..431004TCONS_00009363-exon-sc0000093-1491911889:430885..431004Clytia hemisphaericaexon
TCONS_00009363-exon-sc0000093-1510915933:430885..431004TCONS_00009363-exon-sc0000093-1510915933:430885..431004Clytia hemisphaericaexon
TCONS_00009363-exon-sc0000093-1575043694:430885..431004TCONS_00009363-exon-sc0000093-1575043694:430885..431004Clytia hemisphaericaexon
TCONS_00009363-exon-sc0000093-1491911889:431516..433134TCONS_00009363-exon-sc0000093-1491911889:431516..433134Clytia hemisphaericaexon
TCONS_00009363-exon-sc0000093-1510915933:431516..433134TCONS_00009363-exon-sc0000093-1510915933:431516..433134Clytia hemisphaericaexon
TCONS_00009363-exon-sc0000093-1575043694:431516..433134TCONS_00009363-exon-sc0000093-1575043694:431516..433134Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009363-proteinTCONS_00009363-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093supercontigsc0000093:429090..433134 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.460007	0.319441	0.290924	0.174089	1.13309	0.93342	9.36525	9.0554	10.6603	8.04874	6.16179	9.85384	5.99816	4.77431	7.41127	4.89414	1.38684	2.14703	0.0353758	0.0693625	0.077536	0	0.303727	0.139206	0.373295	0.300037	0	0.0884534	0.107871	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009363 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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