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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009362 ID=TCONS_00009362|Name=TCONS_00009362|organism=Clytia hemisphaerica|type=transcript|length=1451bpRun BLAST on NCBI protein sequence of TCONS_00009362-protein >TCONS_00009362-protein ID=TCONS_00009362-protein|Name=TCONS_00009362-protein|organism=Clytia hemisphaerica|type=polypeptide|length=419bp KAFLMNAVWKAWTKIKLSQIIIKNHHFYRYFISSTCNMGIHGLTKLLADNRun BLAST on NCBI transcript from alignment at sc0000093:404586..421784+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009362 ID=TCONS_00009362|Name=TCONS_00009362|organism=Clytia hemisphaerica|type=transcript|length=17199bp|location=Sequence derived from alignment at sc0000093:404586..421784+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000093:404586..421784+ >TCONS_00009362 ID=TCONS_00009362|Name=TCONS_00009362|organism=Clytia hemisphaerica|type=CDS|length=20160bp|location=Sequence derived from alignment at sc0000093:404586..421784+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009362 vs. Swiss-Prot (Human)
Match: FEN1 (Flap endonuclease 1 OS=Homo sapiens GN=FEN1 PE=1 SV=1) HSP 1 Score: 486.493 bits (1251), Expect = 2.509e-169 Identity = 236/361 (65.37%), Postives = 293/361 (81.16%), Query Frame = 3
Query: 114 MGIHGLTKLLADNAPSAMKENEMKNYFGRKIAIDASMSIYQFLIAVRAEGSQLTNEAGETTSHLMGLFYRTIRMLDNGIKPVYVFDGKPPSLKSGELAKRTERREEAQKQLDAATEAGDQENVDKFTRRLVKVTPQHNKECKELLTYMGIPYVDAPCEAEAQCAELVKGDKVYAMGSEDMDSLTFGTNILLRHLTFSEARKMPIQEFHYDKVINELEFTKEQFVDLCILLGCDYCESIKGVGPVTAMKLIREHKSIEGVLKHLETGNKKYQIPENWLFKEARQLFIEPEVKSAKEVELKWTKPDEDKLVEFMCKKNGFSEERIRNGAKKILKAKQSSTQGRMDSFFKVIPSNKPAVKRKSE 1196
MGI GL KL+AD APSA++EN++K+YFGRK+AIDASMSIYQFLIAVR G L NE GETTSHLMG+FYRTIRM++NGIKPVYVFDGKPP LKSGELAKR+ERR EA+KQL A AG ++ V+KFT+RLVKVT QHN ECK LL+ MGIPY+DAP EAEA CA LVK KVYA +EDMD LTFG+ +L+RHLT SEA+K+PIQEFH +++ EL +EQFVDLCILLG DYCESI+G+GP A+ LI++HKSIE +++ L+ KY +PENWL KEA QLF+EPEV + VELKW++P+E++L++FMC + FSEERIR+G K++ K++Q STQGR+D FFKV S A +++ E
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDP--NKYPVPENWLHKEAHQLFLEPEVLDPESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPE 359 The following BLAST results are available for this feature:
BLAST of TCONS_00009362 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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