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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009360 ID=TCONS_00009360|Name=TCONS_00009360|organism=Clytia hemisphaerica|type=transcript|length=598bp
ATTTTGTAACCACAAGTAATGATATGGATAGATTACCTAGCACTTCCATA
CTTGATCCACCACCATCATACGAGGCGTCCATTAATAAACAGCACCATAA
CAACGGAGCTCCAGTCGAGCGGCATGACATTGAAGGTCAACAAAATAGGA
GTGAAGgtGAAGCAGACGAAAGCCTTCAATCTACCACTGGCGTGCCACCA
CCCTCGTACAAGACTGCAAGTATGGTCAACcaatgaagaaattttcgtaT
GAGGACGAGGAGGCACCATCGGTTAACGACGCAATAGGGCCGATGACTTG
AAACCCCTagtcaatacaccttttcgaccgtagccgccaattttttcttt
gttttaccaCCGTCCTAGTCTTTTTTtcacacctatagacaatagataaa
aggtgtcaaaaaaggattggatcgagtttaaggGGAAAAATACCCGCGTg
tcaattggtggctacggtcgaaaaggtgtattagttTCCTTCACTAACTT
GGACTGGATACGATCGCCGGacttaattttttcaagttttcgaGTATACG
GACGCAGTAGTACACATATAGAAACTCTTTACAGACAAAGAATCAGGA Run BLAST on NCBI transcript from alignment at sc0000093:323736..327430+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009360 ID=TCONS_00009360|Name=TCONS_00009360|organism=Clytia hemisphaerica|type=transcript|length=3695bp|location=Sequence derived from alignment at sc0000093:323736..327430+ (Clytia hemisphaerica)
ATTTTGTAACCACAAGTAATGATATGGATAGATTACCTAGCACTTCCATA
CTTGATCCACCACCATCATACGAGGCGTCCATTAATAAACAGCACCATAA
CAACGGAGCTCCAGTCGAGCGGCATGACATTGAAGGTCAACAAAATAGGA
GTGAAGGTAAGCGTACatttctttatttattttttgtttaataaTTTCGT
TTGTCCGTTTATTAGTTGTATATTCATTTTTTTGGTTGGATTGAAGTGAG
TTAAAACAACACCAAGTTTGgtatttttaaaataatctaAAATTCTCTGC
AAATTTGCTTAAGATGATTAATTACAAGTGATAATTCTATATAATTTGTA
TATTCTTTTTGTCGCGCATAAAGGAACTTAACATAACATTAGCAGCGTAA
ATTGGTACTTAAATATATTAATGGCTTGAAACACATCCAGAATTTTgatc
attcaaaaattttatggtttttggaataagtccaaaaaaagaagaaaaaa
tgttctaaatgtggttggaatgttttgaaaatttcttatttttagcaTTA
TCAGCATTTTGCATCTGCAATGCTTttaaagccttcaaatgtttttttct
tttgacctcAAAGTATAACATTCTTAAACTTTGTCTTATAAGTAAACCTA
ATAAGGCTCAGATTGGCCAGGTCTTTGTAAAATTGAGGGGTTCTTATAAA
ACTCACCGGACGGAAAAAAAGAAGCCAAAACTTTGAATGCATTTTTAAAT
TACAACGAGatataaagaagaagaagaagagcatAGGAAGGCCTATGCTA
AAGGGAATAGGCCTCCTGAAAATAGTCAAGAGAATCACAGCGCAAACAGA
TAACAACGAGATATACCACCTGACAAATCCATCTATCTTGCAAAATGACT
TCCAATCCGCTTTTGGATAAGGAAGAAATAAAACGCTTTCGAAAGAGAGA
AAGAAAACATTCGGCAACAACGTGGTGTTGAAAGTAGATACAGTgaacgc
tctctaattcgatggtatactattcgatacgctttattattcgataatat
tgaaaaagtCCCTGTCGacaagaaactcttataaacaacgctctactatt
cgatgcgctcccttattcgatgaaaatcagattccccttgaaaatcgaat
tagagagcgtcaactgtactttaAAAGGTTGATAGTTCCTTGTATTCTTG
TATATTTTGACATAGCAAAAAGATCGTAGTTTTAAAAAAGCCTCGTATTT
TTCTTTCGAGGTTCGGAATTTTTTTCTGAGGTAATTCTATCTACCTAACA
ATTAAAACAAGAGACGGGAAATTTTTTTCGTGATCATAACAATATGTACA
TCgacaaaatttgatttcattATAAATAATTTACGACTACCGTTCGATGA
AACCTCTCACAGGTTTTATTTTTCCTGCTCAACAACGCACCTCTGTTTcc
aaaaccaaataaaaatattgaatctCTATTGGTTATCGGAAATGCTACTC
TCACATACACTTCCTGCTCAACAACACCTACGtttccaaaacaaaataaa
aatattgaatctCTATTGGTTATCGGAAATGTTACTCTCACATACAAACA
AACAACTTTCTATCTATGATAAATGCTGTTGATATTGTTGTTTATTTCGG
TGTCACTGAACttatgccccccccccaaaaaaaaaaaaaacttttatttt
ttacttaaaggtttttttgtttttgttttttttcgtgTGGCTGgaccttc
cccccccccccaatatcaaaatgcttcctacggcactgtatcTGTTACGA
TTCTGTACCTAATTTCCGTATTATATATTGATATATTGACATGGTGACTA
AAAGGAGACAAGACACTCAGCCATACCAACCTATAGAAAGTAAAcattac
acccctgtatcacaaaCCCGATGGGACCCCAGCGCCACTGGGAAATGTAC
TCAAAATTTCGTCTCCAGTTGAAAAAATACCCTACTACAATTTCAgcatt
tcagccccacttggaaaAGGAATTCTTTTCATTCCCACTTAAAATTCAAC
ggaaaaattgcactccgaTTAACCacccccactggaattttcgggaaatg
atcaaaatcaaaattaaaccaACCTACGCTATTTCAATCCTATCGATTTT
TGACAGTTGTTGGTTCGCCTATAGCCTTCTTTTGTTtggcaaaaaatgta
aattttgcttaATGTAGGAGTTTTGGTGGTGGGCTATCAACTTCAATGTC
CAGGAAAGAATAGAATTATTTTTAGTAAGACATTTTAAGAATCTTGATAA
AATATTACTTCCTTAAACTTGACCTAGTCTAAATTATTTCTAATCCATCG
AGAATCAATCTACGCACAaggttgttttgatgttttaaagGACCGATGGC
CGGTTTGAATCTCCACTTACTCCAATGTTCCGTACAGTTCTTAGATAGCC
GTACTAGCTTCCCCACAAACCTCGTTTAAATAATCGAAAGACAAAAgtca
gatttcacttttattggtagaaagaaaagaaGGGGTGAGACAAAATTCGA
TGAGACACGAGAAAGAGTTTCAGgttgggatggagcatgttgcattccac
caacgcgaaaaaaaacttctcgtccCAAGCCTTTAGACTTGCTCTTTTTT
TACTGTCCGGCGCCAATTAAACTGGGAGGGGCTAATTATGAANTCGTCCC
AAGCCTTTAGACTTGCTCTTTTTTTACTGTCCGGCGCCAATTAAACTGGG
TGGGGCTAATTATGAACGTGCATTGAAATAAAGACGAAGATAGTTTCTTT
ACCGGATATTTGGAAAATGGTTACTAGCTTCTTTAAGCTACTATAACAAA
AGACTAAATTTTAGAATGATTTCCTGCATTACAAATGTTTTGCCGCAAAT
TCTATAAATTTCCTTAATTGgatgttttgaaaaacattaaCCGGAAATTC
CAGGGCAAAATTGCATCCTACGTTCGTGACTTCATTATGAGATGCTTCGA
ATTCTAATTTCATATTTCTGTTTCCCCCAAGGTTACAAACAAATTCGTCT
ATTTTTAGCTTGcttaaattagatttttgaaagtttacATGATGAGCCAG
GACAGAAATTTGACACTGGGGTTCAGGAAAAAATTAAGGGTTGAATATGG
GGGAAATACAAATTCATTAATCgtattccaattttttttgaaaataaatc
gcGAAACtcgtgaaatatttttcacacaAATTGAtccctttctttttttt
aaggtGAAGCAGACGAAAGCCTTCAATCTACCACTGGCGTGCCACCACCC
TCGTACAAGACTGCAAGTATGGTCAACcaatgaagaaattttcgtaTGAG
GACGAGGAGGCACCATCGGTTAACGACGCAATAGGGCCGATGACTTGAAA
CCCCTagtcaatacaccttttcgaccgtagccgccaattttttctttgtt
ttaccaCCGTCCTAGTCTTTTTTtcacacctatagacaatagataaaagg
tgtcaaaaaaggattggatcgagtttaaggGGAAAAATACCCGCGTgtca
attggtggctacggtcgaaaaggtgtattagttTCCTTCACTAACTTGGA
CTGGATACGATCGCCGGacttaattttttcaagttttcgaGTATACGGAC
GCAGTAGTACACATATAGAAACTCTTTACAGACAAAGAATCAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009360-exon-sc0000093-1491911889:323736..323891 | TCONS_00009360-exon-sc0000093-1491911889:323736..323891 | Clytia hemisphaerica | exon |
| TCONS_00009360-exon-sc0000093-1510915933:323736..323891 | TCONS_00009360-exon-sc0000093-1510915933:323736..323891 | Clytia hemisphaerica | exon |
| TCONS_00009360-exon-sc0000093-1575043694:323736..323891 | TCONS_00009360-exon-sc0000093-1575043694:323736..323891 | Clytia hemisphaerica | exon |
| TCONS_00009360-exon-sc0000093-1491911889:326989..327430 | TCONS_00009360-exon-sc0000093-1491911889:326989..327430 | Clytia hemisphaerica | exon |
| TCONS_00009360-exon-sc0000093-1510915933:326989..327430 | TCONS_00009360-exon-sc0000093-1510915933:326989..327430 | Clytia hemisphaerica | exon |
| TCONS_00009360-exon-sc0000093-1575043694:326989..327430 | TCONS_00009360-exon-sc0000093-1575043694:326989..327430 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000093 | supercontig | sc0000093:323736..327430 + |
Blast
The following BLAST results are available for this feature:
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