TCONS_00009326 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009326
Unique NameTCONS_00009326
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length676

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009326 ID=TCONS_00009326|Name=TCONS_00009326|organism=Clytia hemisphaerica|type=transcript|length=676bp
GACATTTTCAATAAAAGTCAGTCTTGATTGTGTTAGTTTCGGTTTCGTCA
ATGGCATCGTGTATATCTGTTCGAGTCGAGCAGAATAATATTTCAACATC
TGCGAAAATCTGTCGTCTGTATTTGAGCTGGCCAAGTCTTGATCTTGATG
ATCCATATCTGACATTAGTGCGCGGTAATCCTTTGTAGATATCTGGGAAA
GATGGTTCTTGAAGCTTGTGATGTACGATAACTTTTGCAGCAACGAACTG
ATCTCGATACTTTTATCGATCAGAACTTGATCGGAGCAGGTGACTTTCAG
ATATTGGTAAACTCCATCTAACAGTCTTTTCAACAAAtggtttttgacaa
aaatcgaaGAGATAATACTATTTCTAGATTTTCCATCAACAAAACTGGCA
TCGCAAAAATATGCGTGAGCGACAGACGTAAACCTTCTTTCCTCCAATGC
CACTTTCGACATAATCCCATCCAGAAGTCCAAAGGAGTCAACCCGAAGGC
AAGCTTTTATCGCACCCTTTAGCGTTTTAATTATCATTGGAATATCTTTG
TCTTGTGTAAAATACTTTATATCGACGCCAAGAGATTCCAAAAGCAATTT
AGCACAGTCCAGGGCTTTACGAATCGGCTCTTTAGCTTGATCGGATTTTG
ATGATAAATTGCTATTTGCAATAAAG
Run BLAST on NCBI

protein sequence of TCONS_00009326-protein

>TCONS_00009326-protein ID=TCONS_00009326-protein|Name=TCONS_00009326-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
FIANSNLSSKSDQAKEPIRKALDCAKLLLESLGVDIKYFTQDKDIPMIIK
TLKGAIKACLRVDSFGLLDGIMSKVALEERRFTSVAHAYFCDASFVDGKS
RNSIISSIFVKNHLLKRLLDGVYQYLKVTCSDQVLIDKSIEISSLLQKLS
YITSFKNHLSQISTKDYRALMSDMDHQDQDLASSNTDDRFSQMLKYYSAR
LEQIYTMPLTKPKLTQSRLTFIENV
Run BLAST on NCBI

transcript from alignment at sc0000091:467539..468214

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009326 ID=TCONS_00009326|Name=TCONS_00009326|organism=Clytia hemisphaerica|type=transcript|length=676bp|location=Sequence derived from alignment at sc0000091:467539..468214 (Clytia hemisphaerica)
CTTTATTGCAAATAGCAATTTATCATCAAAATCCGATCAAGCTAAAGAGC
CGATTCGTAAAGCCCTGGACTGTGCTAAATTGCTTTTGGAATCTCTTGGC
GTCGATATAAAGTATTTTACACAAGACAAAGATATTCCAATGATAATTAA
AACGCTAAAGGGTGCGATAAAAGCTTGCCTTCGGGTTGACTCCTTTGGAC
TTCTGGATGGGATTATGTCGAAAGTGGCATTGGAGGAAAGAAGGTTTACG
TCTGTCGCTCACGCATATTTTTGCGATGCCAGTTTTGTTGATGGAAAATC
TAGAAATAGTATTATCTCttcgatttttgtcaaaaaccaTTTGTTGAAAA
GACTGTTAGATGGAGTTTACCAATATCTGAAAGTCACCTGCTCCGATCAA
GTTCTGATCGATAAAAGTATCGAGATCAGTTCGTTGCTGCAAAAGTTATC
GTACATCACAAGCTTCAAGAACCATCTTTCCCAGATATCTACAAAGGATT
ACCGCGCACTAATGTCAGATATGGATCATCAAGATCAAGACTTGGCCAGC
TCAAATACAGACGACAGATTTTCGCAGATGTTGAAATATTATTCTGCTCG
ACTCGAACAGATATACACGATGCCATTGACGAAACCGAAACTAACACAAT
CAAGACTGACTTTTATTGAAAATGTC

Coding sequence (CDS) from alignment at sc0000091:467539..468214

>TCONS_00009326 ID=TCONS_00009326|Name=TCONS_00009326|organism=Clytia hemisphaerica|type=CDS|length=675bp|location=Sequence derived from alignment at sc0000091:467539..468214 (Clytia hemisphaerica)
TTTATTGCAAATAGCAATTTATCATCAAAATCCGATCAAGCTAAAGAGCC
GATTCGTAAAGCCCTGGACTGTGCTAAATTGCTTTTGGAATCTCTTGGCG
TCGATATAAAGTATTTTACACAAGACAAAGATATTCCAATGATAATTAAA
ACGCTAAAGGGTGCGATAAAAGCTTGCCTTCGGGTTGACTCCTTTGGACT
TCTGGATGGGATTATGTCGAAAGTGGCATTGGAGGAAAGAAGGTTTACGT
CTGTCGCTCACGCATATTTTTGCGATGCCAGTTTTGTTGATGGAAAATCT
AGAAATAGTATTATCTCttcgatttttgtcaaaaaccaTTTGTTGAAAAG
ACTGTTAGATGGAGTTTACCAATATCTGAAAGTCACCTGCTCCGATCAAG
TTCTGATCGATAAAAGTATCGAGATCAGTTCGTTGCTGCAAAAGTTATCG
TACATCACAAGCTTCAAGAACCATCTTTCCCAGATATCTACAAAGGATTA
CCGCGCACTAATGTCAGATATGGATCATCAAGATCAAGACTTGGCCAGCT
CAAATACAGACGACAGATTTTCGCAGATGTTGAAATATTATTCTGCTCGA
CTCGAACAGATATACACGATGCCATTGACGAAACCGAAACTAACACAATC
AAGACTGACTTTTATTGAAAATGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005218XLOC_005218Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009326-exon-sc0000091-1491911889:467539..468214TCONS_00009326-exon-sc0000091-1491911889:467539..468214Clytia hemisphaericaexon
TCONS_00009326-exon-sc0000091-1510915933:467539..468214TCONS_00009326-exon-sc0000091-1510915933:467539..468214Clytia hemisphaericaexon
TCONS_00009326-exon-sc0000091-1575043694:467539..468214TCONS_00009326-exon-sc0000091-1575043694:467539..468214Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009326-proteinTCONS_00009326-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:467539..468214 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0759695	0.0740822	0	0	0.307347	0.161913	0	0.0914382	0	0	0	0	0.10105	0	0.043138	0.0462937	0	0.0584539	0	0	0.146903	0	0	0	0.65252	0.509564	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009326 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top