TCONS_00009317 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009317
Unique NameTCONS_00009317
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1100

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009317 ID=TCONS_00009317|Name=TCONS_00009317|organism=Clytia hemisphaerica|type=transcript|length=1100bp
TAgatcaaataaattaaaaagtcATGTCTAAAGCCCCACCAACAgcttct
aaaaggcttttgaaaGAGCTAAGTGAGCTCAGTAAAAATCCTGTTGAAGG
ACTAGAATTTGACGCCGACAAAATAGCTTCTAATCTGACAAAATGGCATG
TTATTTTAAATGGAGCAGCTGGTACGTTGTACAGTGGTGAAAAGTTTGAA
CTGCAATTTACTTTTGGAGATAAGTATCCTTTTGATTCACCGCAAGTTAT
ATTTATTGGTAAACATATTCCAGTTCATCCTCATATTTACACAAATGGAC
ATATTTGTTTATCAATTTTAACAGATGATTGGACTCCAGCAATGTCTGTG
TCTTCAGTTTGTTTAAGTATTGTCAGCATGCTTAGCAGTTGCAAAAAGAA
AGAACTCCCACCAGATAATAATTCTTACGTAAAAACAGCTTCAAGTAATC
CTAAAAAGACAAGATGGTGGTTTCATGATGATACTGTTTAGACACTTTTA
TTCTTGATACTTTGATGTTATGGACAGTTTTTGGTGGAATCTTTATATAA
TGGAATTTGCGAAATTCAAATTAGTCACAATGTTATTTGTACAAGATTTT
CAATTCATCATTTTCCTGGCAATTGGAACTTCAAATACCACTGCTACCTG
CTGCAGTCTGTTGCAAGTGTAGTAGATTGCTGGCAAAGCCAATAAATATT
GAATGTTTCTTTAAAATTGTTTCTGTTCTAgaacaatatttttaaattgc
tGGGTTGATTTTTCATACCTctagagaagaaattttggcaaatggGCCAA
TTCACcatttttagtaaaatttgGACATTTATCATGACAAATTAAGATAT
TTCAAATTCTGGGAGAATTAGTTTGCAAATGACCCATGAAGTATAAAAGT
GGACATAATTTTGGATGAATTAAAAGAGAATCAATTTTGCAAGAAGAgtc
atttttgttgattttgctatttttttttcttaccaAAATATCTTCCTTTA
AGTTACCATTAGGCTATATTATggtatttctatatttttatatatattat
gTTAGACTTTTTACCTAATAATAATAGTAGGTTTTCAAAGCAAACTCGAA
Run BLAST on NCBI

protein sequence of TCONS_00009317-protein

>TCONS_00009317-protein ID=TCONS_00009317-protein|Name=TCONS_00009317-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MSKAPPTASKRLLKELSELSKNPVEGLEFDADKIASNLTKWHVILNGAAG
TLYSGEKFELQFTFGDKYPFDSPQVIFIGKHIPVHPHIYTNGHICLSILT
DDWTPAMSVSSVCLSIVSMLSSCKKKELPPDNNSYVKTASSNPKKTRWWF
HDDTV
Run BLAST on NCBI

transcript from alignment at sc0000091:402824..403923

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009317 ID=TCONS_00009317|Name=TCONS_00009317|organism=Clytia hemisphaerica|type=transcript|length=1100bp|location=Sequence derived from alignment at sc0000091:402824..403923 (Clytia hemisphaerica)
TTCGAGTTTGCTTTGAAAACCTACTATTATTATTAGGTAAAAAGTCTAAc
ataatatatataaaaatatagaaataccATAATATAGCCTAATGGTAACT
TAAAGGAAGATATTTtggtaagaaaaaaaaatagcaaaatcaacaaaaat
gacTCTTCTTGCAAAATTGATTCTCTTTTAATTCATCCAAAATTATGTCC
ACTTTTATACTTCATGGGTCATTTGCAAACTAATTCTCCCAGAATTTGAA
ATATCTTAATTTGTCATGATAAATGTCcaaattttactaaaaatgGTGAA
TTGGCccatttgccaaaatttcttctctagAGGTATGAAAAATCAACCCa
gcaatttaaaaatattgttcTAGAACAGAAACAATTTTAAAGAAACATTC
AATATTTATTGGCTTTGCCAGCAATCTACTACACTTGCAACAGACTGCAG
CAGGTAGCAGTGGTATTTGAAGTTCCAATTGCCAGGAAAATGATGAATTG
AAAATCTTGTACAAATAACATTGTGACTAATTTGAATTTCGCAAATTCCA
TTATATAAAGATTCCACCAAAAACTGTCCATAACATCAAAGTATCAAGAA
TAAAAGTGTCTAAACAGTATCATCATGAAACCACCATCTTGTCTTTTTAG
GATTACTTGAAGCTGTTTTTACGTAAGAATTATTATCTGGTGGGAGTTCT
TTCTTTTTGCAACTGCTAAGCATGCTGACAATACTTAAACAAACTGAAGA
CACAGACATTGCTGGAGTCCAATCATCTGTTAAAATTGATAAACAAATAT
GTCCATTTGTGTAAATATGAGGATGAACTGGAATATGTTTACCAATAAAT
ATAACTTGCGGTGAATCAAAAGGATACTTATCTCCAAAAGTAAATTGCAG
TTCAAACTTTTCACCACTGTACAACGTACCAGCTGCTCCATTTAAAATAA
CATGCCATTTTGTCAGATTAGAAGCTATTTTGTCGGCGTCAAATTCTAGT
CCTTCAACAGGATTTTTACTGAGCTCACTTAGCTCtttcaaaagcctttt
agaagcTGTTGGTGGGGCTTTAGACATgactttttaatttatttgatcTA

Coding sequence (CDS) from alignment at sc0000091:402824..403923

>TCONS_00009317 ID=TCONS_00009317|Name=TCONS_00009317|organism=Clytia hemisphaerica|type=CDS|length=468bp|location=Sequence derived from alignment at sc0000091:402824..403923 (Clytia hemisphaerica)
CTAAACAGTATCATCATGAAACCACCATCTTGTCTTTTTAGGATTACTTG
AAGCTGTTTTTACGTAAGAATTATTATCTGGTGGGAGTTCTTTCTTTTTG
CAACTGCTAAGCATGCTGACAATACTTAAACAAACTGAAGACACAGACAT
TGCTGGAGTCCAATCATCTGTTAAAATTGATAAACAAATATGTCCATTTG
TGTAAATATGAGGATGAACTGGAATATGTTTACCAATAAATATAACTTGC
GGTGAATCAAAAGGATACTTATCTCCAAAAGTAAATTGCAGTTCAAACTT
TTCACCACTGTACAACGTACCAGCTGCTCCATTTAAAATAACATGCCATT
TTGTCAGATTAGAAGCTATTTTGTCGGCGTCAAATTCTAGTCCTTCAACA
GGATTTTTACTGAGCTCACTTAGCTCtttcaaaagccttttagaagcTGT
TGGTGGGGCTTTAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005209XLOC_005209Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009317-proteinTCONS_00009317-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009317-exon-sc0000091-1491911889:402824..403923TCONS_00009317-exon-sc0000091-1491911889:402824..403923Clytia hemisphaericaexon
TCONS_00009317-exon-sc0000091-1510915933:402824..403923TCONS_00009317-exon-sc0000091-1510915933:402824..403923Clytia hemisphaericaexon
TCONS_00009317-exon-sc0000091-1575043694:402824..403923TCONS_00009317-exon-sc0000091-1575043694:402824..403923Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:402824..403923 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.6621	12.8911	4.82397	4.49897	8.1082	6.49207	7.98598	6.37409	5.50282	5.19522	6.25283	2.83748	4.87262	4.12522	5.20028	4.24618	5.94834	4.96327	4.82531	5.71373	4.69678	5.18275	15.066	16.4781	2.39404	4.96002	5.89661	3.49612	6.7176	7.06931
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000608UBQ-conjugat_E2
IPR016135UBQ-conjugating_enzyme/RWD
Blast
[Close]
BLAST of TCONS_00009317 vs. Swiss-Prot (Human)
Match: UBE2W (Ubiquitin-conjugating enzyme E2 W OS=Homo sapiens GN=UBE2W PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 4.563e-61
Identity = 90/148 (60.81%), Postives = 117/148 (79.05%), Query Frame = 3 
Query:   42 TASKRXXXXXXXXXXNPVEGLEFDADKIASNLTKWHVILNGAAGTLYSGEKFELQFTFGDKYPFDSPQVIFIGKHIPVHPHIYTNGHICLSILTDDWTPAMSVSSVCLSIVSMLSSCKKKELPPDNNSYVKTASSNPKKTRWWFHDDT 485
            +  KRL KEL  L  +P  G+  +   + +++T+W V + GA GTLY GEKF+L F F  +YPFDSPQV+F G++IPVHPH+Y+NGHICLSILT+DW+PA+SV SVCLSI+SMLSSCK+K  PPDN+ YV+T + NPKKT+WW+HDDT
Sbjct:    3 SMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDT 150
The following BLAST results are available for this feature:
BLAST of TCONS_00009317 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBE2W4.563e-6160.81Ubiquitin-conjugating enzyme E2 W OS=Homo sapiens ... [more]
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