|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009301 ID=TCONS_00009301|Name=TCONS_00009301|organism=Clytia hemisphaerica|type=transcript|length=1886bpRun BLAST on NCBI transcript from alignment at sc0000091:624072..637097- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009301 ID=TCONS_00009301|Name=TCONS_00009301|organism=Clytia hemisphaerica|type=transcript|length=13026bp|location=Sequence derived from alignment at sc0000091:624072..637097- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00009301 vs. Swiss-Prot (Human)
Match: ENTP3 (Ectonucleoside triphosphate diphosphohydrolase 3 OS=Homo sapiens GN=ENTPD3 PE=1 SV=2) HSP 1 Score: 181.03 bits (458), Expect = 3.184e-49 Identity = 125/441 (28.34%), Postives = 206/441 (46.71%), Query Frame = 3
Query: 273 RFGIVFDAGGSGTRMYIYSF-----DNSNQYVQTLQEDCEGDGLSKYGGRTSDLKPLLNKCLEDASTNIPKEVSTSNVPLYLKATAGMRKLREQNMTTYNNVWSAVRAILNNGSFPVKMAETMLGIKEAQYSWTTVNHLL--------------KSTDDTSGLLEMGSTSLQVAFEPHSSNSIPSNYSEEVSLNGKSYKIYAHSYMCLGRDEFGRRYYAKLAADKFNNSAT---IMNPCGFQGYNVSKTYTDLFEVPCVKGHFAQELFGQSINPDLSSMNATDSFTFVGTGDFDACKQQVESMFKKNCTH--SSCGTLDAYQPDLYGHFTGIGGGVYFAAEFLQLPDDFTENDFENKTKELCTTPLNEVK-NRTGFGK-YSYDYCLSNTYTNFVLQNLLKINKTEKGVINFARKINDQKISWTMG---SIIEDTPDMSPSV 1508
++GIV DAG S T +Y+Y + +N+ QT + +G G+S YG D+ +C++ +P + S P++L ATAGMR LR QN T N V ++++ + F + A+ + G +E Y W T N+L+ +T+G L++G S Q++F + ++ +VSL G Y +Y HS+ C GR+E +++ A L NS T + NPC + Y++S T +F+ C +++ S N D TF GTGD CK++V S+F H +C YQP + G F G Y+ A L L F+ + F + T C+ +++ F + Y+ YC S Y + N K + I+F +++ + I+W++G S+ P SP +
Sbjct: 56 KYGIVLDAGSSRTTVYVYQWPAEKENNTGVVSQTFKCSVKGSGISSYGNNPQDVPRAFEECMQKVKGQVPSHLHGST-PIHLGATAGMRLLRLQNETAANEVLESIQSYFKSQPFDFRGAQIISGQEEGVYGWITANYLMGNFLEKNLWHMWVHPHGVETTGALDLGGASTQISFVAGEKMDLNTSDIMQVSLYGYVYTLYTHSFQCYGRNEAEKKFLAML----LQNSPTKNHLTNPCYPRDYSISFTMGHVFDSLC------------TVDQRPESYNPNDVITFEGTGDPSLCKEKVASIFDFKACHDQETCSFDGVYQPKIKGPFVAF-AGFYYTASALNLSGSFSLDTFNSSTWNFCSQNWSQLPLLLPKFDEVYARSYCFSANYIYHLFVNGYKFTEETWPQIHFEKEVGNSSIAWSLGYMLSLTNQIPAESPLI 478 The following BLAST results are available for this feature:
BLAST of TCONS_00009301 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.