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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009274 ID=TCONS_00009274|Name=TCONS_00009274|organism=Clytia hemisphaerica|type=transcript|length=4170bpRun BLAST on NCBI protein sequence of TCONS_00009274-protein >TCONS_00009274-protein ID=TCONS_00009274-protein|Name=TCONS_00009274-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1136bp MKKLTAIFGSCLFFFVVMTMYLLLDQFQITIDKQKFIEETQNVEKSVNDIRun BLAST on NCBI transcript from alignment at sc0000091:214243..229369- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009274 ID=TCONS_00009274|Name=TCONS_00009274|organism=Clytia hemisphaerica|type=transcript|length=15127bp|location=Sequence derived from alignment at sc0000091:214243..229369- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000091:214243..229369- >TCONS_00009274 ID=TCONS_00009274|Name=TCONS_00009274|organism=Clytia hemisphaerica|type=CDS|length=54576bp|location=Sequence derived from alignment at sc0000091:214243..229369- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009274 vs. Swiss-Prot (Human)
Match: MA2A2 (Alpha-mannosidase 2x OS=Homo sapiens GN=MAN2A2 PE=2 SV=3) HSP 1 Score: 929.858 bits (2402), Expect = 0.000e+0 Identity = 503/1161 (43.32%), Postives = 707/1161 (60.90%), Query Frame = 2
Query: 53 MKKLTAIFGSCLFFFVVMTMYLLLDQFQITIDKQKFIEETQNVEKS-VNDIGRDINKLEEEINSNDRIIDSMKDRVQGIDAADPGFQNRPKPIIPIKDNEGA-------APDFGGNSEPSEGMCSFTNTPSGDKQDIRMLXXXXXXXXXXXXGGVWKQGWDISYSRNAFDNKKLKVFVMPHSHNDPGWLKTVVSYFNDQTVHIISNIVDALAKDEKRKFIWAETSYFKMWWDQTSPMRRQLAQEQIRNGQLEIVTGGWVMNDESNPHYWNMLDQMMEGHIWMQQHIGVKPKYGWAIDPFGYSSTMPYLLKRMGFEGMLIQRVHYNVKKYLAKKKNLEFMWRQNWDHGKSTDIFTHVMPFYSYDVPHTCGPNPKVCCQFDFRRLSGGGMFCPWHIPPKRIDDHNVRERAETLLDQYKKKAQLYRSNVVLAPLGDDFRYDKEFEVREQFSNYEKLMNYVNSHPELNAEIKFGTLQDYFHAVFEREGVEPGDHPPGFPTLGGDFFTYADRNDHYWSGYYTSRSFFKHMDRELMAHLRAAEIIFSLANAHSQHHGNFEGEDL--FHKLSGARKELALFQHHDGVTGTAKDHVVTDYGSRMHRAIKDSVAVMAKSANFLLTTDKNQFKDSSEGVQFFKFSETRGNFDSIPTKNTFIVSNSKTSVCFYNSLAQDRRQTVFLHISEPIVQVTTPDGKVIPHQVSLLWKDSDNLISSKYLLSFVADIPALGLARYEIKKDDSGQESFATTTT--YNTRRSYENRH----ITVKSGSGKEIKLKNHHFEATFDVESGLLTDMKLKDRPLHKMQIKFK--KYGTTGRMDKSGAYLFMPDGQATTLNSLNQPVI-VTEGKIFSEVRVKTEYVLQIVRVYHGQVDEAKSLKIENILDIRQTSNFELVMRIESDLKNKEKEFFTDLNGFQIQRRKTLAKLPLQANFYPAPALVFLQDGTSRLTLQTQQSNGVASLETGYLEVVMDRRLMQDDNRGLGQGVRDNKVTPSFFNLLLEDFDTPKQQVAKPPPVAYQSSLGITLSHQIQHPIFTFFIASTVSGQQYLPLARGLKIQLPCDTHLLNLKTLPKNIKDEPGDVSTLLLHRIGYDC-------HFKSHCSERRQTFQDVFDPLTVNDLKETTLSLLHLKKDMNPQTRIDVPPMEIKAFKLKL 3457
+KK + G+ +F V ++YL+LD+ Q + + N +S ++ + I +LE+ + N II +KD V + A G P ++P G+ P F S P + C F G K +++ML +E+PFD++DGGVW+QG+DISY + +D + L+VFV+PHSHNDPGW+KT Y+ +QT HI++++V L +D +R+F+WAE S+F WWD + +R + + NGQLEI TGGWVM DE+N HY+ ++DQ++EGH W+++++G P+ GWA+DPFGYSSTMPYLL+R MLIQRVHY +KK+ A +LEFMWRQ WD STDIF H+MPFYSYDVPHTCGP+PK+CCQFDF+RL GG + CPW +PP+ I + NV ERA LLDQY+KK+QL+RSNV+L PLGDDFRYDK E QF NY++L ++ NS P L+ + +FGTL DYF A+++R GVEPG PPGFP L GDFF+YADR DHYW+GYYTSR F+K +DR L AHLR AE+++SLA AH++ G L F L+ AR+ L LFQHHD +TGTAK+ VV DYG R+ R++ + V+ +A++L+ DK + E F + +TR + D++P + + +S V +N L Q+R V L ++ P V+V + +G+ + Q+S W + + Y +S +PALGL +++ G + ++ + R+ +RH + V + L N + + F +GLL ++ D H+ Q+ + YGT DKSGAYLF+PDG+A PV+ VTEG FSEV E++ Q VR+Y+ E SL I +++DIR N EL + I +D+ + + FFTDLNGFQ+Q R+ L KLPLQANFYP P + ++QD RLTL T Q+ GV+SL+ G LEV++DRRLMQDDNRGLGQG++DNK T + F LLLE T +V +Y S L S + P +A L L LPCD HLLNL+TL P + L+LHR G+DC F S+ + +F L V L+ T+L+LL+ + T + + PMEI F+L+L
Sbjct: 3 LKKQVTVCGAAIFCVAVFSLYLMLDRVQHDPTRH---QNGGNFPRSQISVLQNRIEQLEQLLEENHEIISHIKDSVLELTANAEG----PPAMLPYYTVNGSWVVPPEPRPSFFSIS-PQD--CQFALGGRGQKPELQMLTVSEELPFDNVDGGVWRQGFDISYDPHDWDAEDLQVFVVPHSHNDPGWIKTFDKYYTEQTQHILNSMVSKLQEDPRRRFLWAEVSFFAKWWDNINVQKRAAVRRLVGNGQLEIATGGWVMPDEANSHYFALIDQLIEGHQWLERNLGATPRSGWAVDPFGYSSTMPYLLRRANLTSMLIQRVHYAIKKHFAATHSLEFMWRQTWDSDSSTDIFCHMMPFYSYDVPHTCGPDPKICCQFDFKRLPGGRINCPWKVPPRAITEANVAERAALLLDQYRKKSQLFRSNVLLVPLGDDFRYDKPQEWDAQFFNYQRLFDFFNSRPNLHVQAQFGTLSDYFDALYKRTGVEPGARPPGFPVLSGDFFSYADREDHYWTGYYTSRPFYKSLDRVLEAHLRGAEVLYSLAAAHARRSGLAGRYPLSDFTLLTEARRTLGLFQHHDAITGTAKEAVVVDYGVRLLRSLVNLKQVIIHAAHYLVLGDKETYHFDPEA-PFLQVDDTRLSHDALPERTVIQLDSSPRFVVLFNPLEQERFSMVSLLVNSPRVRVLSEEGQPLAVQISAHWSSATEAVPDVYQVSVPVRLPALGLGVLQLQLGLDGHRTLPSSVRIYLHGRQLSVSRHEAFPLRVIDSGTSDFALSNRYMQVWFSGLTGLLKSIRRVDEE-HEQQVDMQVLVYGTRTSKDKSGAYLFLPDGEAKPYVPKEPPVLRVTEGPFFSEVVAYYEHIHQAVRLYNLPGVEGLSLDISSLVDIRDYVNKELALHIHTDI-DSQGIFFTDLNGFQVQPRRYLKKLPLQANFYPMPVMAYIQDAQKRLTLHTAQALGVSSLKDGQLEVILDRRLMQDDNRGLGQGLKDNKRTCNRFRLLLER-RTVGSEVQDSHSTSYPSLLSHLTSMYLNAPALALPVARMQLPGPGLRSFHPLASSLPCDFHLLNLRTLQAEEDTLPSAETALILHRKGFDCGLEAKNLGFNCTTSQGKVALGSLFHGLDVVFLQPTSLTLLYPLASPSNSTDVYLEPMEIATFRLRL 1149 The following BLAST results are available for this feature:
BLAST of TCONS_00009274 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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