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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009253 ID=TCONS_00009253|Name=TCONS_00009253|organism=Clytia hemisphaerica|type=transcript|length=6757bpRun BLAST on NCBI protein sequence of TCONS_00009253-protein >TCONS_00009253-protein ID=TCONS_00009253-protein|Name=TCONS_00009253-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1244bp MQSLQERLDNALIDQEEKPTEQVVSKNESTNDTGNSVADTSQGFNLLGQRRun BLAST on NCBI transcript from alignment at sc0000091:82286..101218- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009253 ID=TCONS_00009253|Name=TCONS_00009253|organism=Clytia hemisphaerica|type=transcript|length=18933bp|location=Sequence derived from alignment at sc0000091:82286..101218- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000091:82286..101218- >TCONS_00009253 ID=TCONS_00009253|Name=TCONS_00009253|organism=Clytia hemisphaerica|type=CDS|length=74700bp|location=Sequence derived from alignment at sc0000091:82286..101218- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009253 vs. Swiss-Prot (Human)
Match: M3K4 (Mitogen-activated protein kinase kinase kinase 4 OS=Homo sapiens GN=MAP3K4 PE=1 SV=2) HSP 1 Score: 672.544 bits (1734), Expect = 0.000e+0 Identity = 412/1114 (36.98%), Postives = 634/1114 (56.91%), Query Frame = 3
Query: 2619 TSRYREFVERNIRENGLLFIMKRVREILYIPLKKAKFCI---DDPTVNSTKFSRVFEIQFGNQLNKMLSVFLKLNDTKMANFINDIEKEAKQFNKYAQYGKCFQDMNLPTFVDIFSFMVLIPFDVVHESIRFRIDYKPKVQPSHLSIRQLILECKEVVAGGIIALHHFREM-TTIIPDATKAKLADRKNEFDDDLKSVLNVYFEYLQTSFHLMQKSKQASFSLKNIAEEEWDFAKEICPYISGAEARAGFKFCCLSSDLLKSTEHYLESSMEE-CSEKYSPADEENLQ---RHKLLGVSREYKHIFKELRGRASKALAFARMLHKDLGISNKYKLHCSTDTLFKMLKDSKHFKVDYHGMNIGFWVFVTEEGAKDESFSTKLLNLTFG---IPDHDNSLGRGYVLLVPKKSKEK------CLWIGRRMSIEYTSEVALALSYIDQVEYVTVISNNLYNLNTQCKRFEQRLNPGAVSLIVERTSSHMEIEKALNELKESTYKLAKSIVTSTQIMYDNLCSNQSIELDEADLNSAHKSCIETMHSSFAVGFEYLRELARMVGKGHGSHKKRISHFFVTVSRLWIQFVLTKTEQGRGTKPRWAIPGLEFLVATIDPSHTEPMEESVFLNLQEEMQKCVKHIIGRAES-----------RSKRKLKADKRSSSPFTV---------YRSRSVPASQLKDGSQS-----------------------LENIISPSNDTINVRNSFPGEFVRSVRTDTTLSDTSADRISTLSNVSSE-----GDTLDSVEQSF-LDGDVEPVNDP-----PMIRIRNAIQEIEERRTAKLQHMRVIGNVTYKKANFASELVHNVRKVNFKWQLGNKIGEGQFGKVYSAVNLDTGDLMAVKQVRFNPHDYGTVQEIADEITNIQGLLHDSLVKYFGVEIHKNEMLIFMEYCADGTIAEVAKVGLPESLIRVYTYQIIKAINFLHQSGVVHRDIKGANIFLSSSGLIKIGDFGSAVKLKDPMCTTQGEVFNTRGTAAFMAPEVITLDKGRGYGRAADIWSLGCVVIEMSTGKQPWYECDNIYAIMYRVGDGNHPPIPDRLSEEGRDFLECCFIHDQNYRWTANMLEDHAFVKV 5747
TS YR FV++ +++ GL ++ R+ +++ L++A+ + D P +FS + +G S +++L+ T ++ E++ A + + M+LP+F F + + +V+HE ++ R++ +P +PS LSI+QL+ ECKEV+ GG++ +++ M ++ D K + F++DL +L VYF+Y+++ ++Q+ QAS SLKN+ EEEW+F KEI YI G EA+AG FC ++ LLKST +LE ++E C+E ++ AD+ + R ++ +SR K +F E R RASKAL FA+ML KDL I+ +++L L +LK ++ KV G+ +FV + A+++S +LLN G D D+ L Y+LL + + W + + + E L + QV+ + ++ +L Q K F+Q + G ++L E+TSS I KAL +LK +L I + + S E+DE++ + + E M + GFEY +E+ R++ G +++I +++ +R W+ +VLTK E GRGT+PRWA G +FL A I+P+ + E FL+LQ M +C+ H+IG+ S S R +K + S P + +RS+P+ GS + L IS ++DT R S E R L S R S+ + E GD+ S +S+ L + D P+ I+ +++ EE+R +++ +IG V ++ + + +RKV FKWQ GNKIGEGQ+GKVY+ +++DTG+LMA+K++RF P+D+ T++E ADE+ +G+ H +LV+YFGVE+H+ EM IFMEYC +GT+ EV+++GL E +IR+Y+ QI AIN LH+ G+VHRDIKGANIFL+SSGLIK+GDFG +VKLK+ T GEV +T GTAA+MAPEVIT KG G+GRAADIWSLGCVVIEM TGK+PW+E ++ + IMY+VG G+ PPIP+RLS EG+DFL C D RWTA+ L DH+FVKV
Sbjct: 523 TSIYRPFVDKALKQMGLRKLILRLHKLMDGSLQRARIALVKNDRPV----EFSEFPDPMWG-------SDYVQLSRTPPSS-----EEKCS-----AVSWEELKAMDLPSFEPAFLVLCRVLLNVIHECLKLRLEQRPAGEPSLLSIKQLVRECKEVLKGGLLMKQYYQFMLQEVLEDLEKPDC--NIDAFEEDLHKMLMVYFDYMRSWIQMLQQLPQASHSLKNLLEEEWNFTKEITHYIRGGEAQAGKLFCDIAGMLLKSTGSFLEFGLQESCAEFWTSADDSSASDEIRRSVIEISRALKELFHEARERASKALGFAKMLRKDLEIAAEFRLSAPVRDLLDVLKSKQYVKVQIPGLE-NLQMFVPDTLAEEKSIILQLLNAAAGKDCSKDSDDVLIDAYLLLTKHGDRARDSEDSWGTWEAQPVKVVPQVETVDTLRSM-QVDNLLLVVMQSAHLTIQRKAFQQSIE-GLMTLCQEQTSSQPVIAKALQQLKNDALELCNRISNAIDRVDHMFTSEFDAEVDESESVTLQQYYREAMIQGYNFGFEYHKEVVRLMS---GEFRQKIGDKYISFARKWMNYVLTKCESGRGTRPRWATQGFDFLQA-IEPAFISALPEDDFLSLQALMNECIGHVIGKPHSPVTGLYLAIHRNSPRPMKVPRCHSDPPNPHLIIPTPEGFSTRSMPSDARSHGSPAAAAAAAAAAVAASRPSPSGGDSVLPKSISSAHDT---RGSSVPENDRLASIAAELQFRSLSRHSSPTEERDEPAYPRGDSSGSTRRSWELRTLISQSKDTASKLGPIEAIQKSVRLFEEKRYREMRRKNIIGQVCDTPKSYDNVMHVGLRKVTFKWQRGNKIGEGQYGKVYTCISVDTGELMAMKEIRFQPNDHKTIKETADELKIFEGIKHPNLVRYFGVELHREEMYIFMEYCDEGTLEEVSRLGLQEHVIRLYSKQITIAINVLHEHGIVHRDIKGANIFLTSSGLIKLGDFGCSVKLKNNAQTMPGEVNSTLGTAAYMAPEVITRAKGEGHGRAADIWSLGCVVIEMVTGKRPWHEYEHNFQIMYKVGMGHKPPIPERLSPEGKDFLSHCLESDPKMRWTASQLLDHSFVKV 1603 The following BLAST results are available for this feature:
BLAST of TCONS_00009253 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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