TCONS_00009248 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00009248
Unique Name	TCONS_00009248
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1996

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000091:71003..74700-

transcript sequence

>TCONS_00009248 ID=TCONS_00009248|Name=TCONS_00009248|organism=Clytia hemisphaerica|type=transcript|length=1996bp
CAAATGTGTGTTCAGACTCTCCACGTAACTTTCAGTTCAATTATAATAAT
GCATTGCCCTGCATTAGGTTTATAAAATGTCCGGTCTGctacttttttgg
aaaagatttACATGCCCTACTCTTTTCCATAGAGCTTAACTTATAATACT
AacctaaaaaacgtaaaagaaagtgaaaatgatAACCTGCTGGTTCATTT
TACTGGTATTATACAGTGGCGTTTTTAGGGCGGAGAAGCCACCCAATATT
GTTTTGATGGTTGCTGATGACTTGGGTTGGACAGATGTTGGATTCCATGG
ATCAGATCAAATTCCAACACCGAATATTGATAAATTGGCAAAAGAAGGAA
TTATTTTAAATAATTATTATGTGCAACCAATCTGTTCTCCAACGAGAAGT
GCTCTGATGACTGGAAGATATCCAATTCACACTGGCATGTACCACAATAC
AATTTATGTGGAAGAACCTTGGGGTCTTCCCCTTGAAGAGAAAATCCTGC
CACAATATTTAAAGGATATGGGGTATGCTACACACGCCGTTGGAAAGTGG
CACCTTGGTTACTTTGCCAAAGAATACACACCAACCTATCGAGGATTCGA
TTCATATTACGGATATTATTGCGGTGCGGAAGACTATTTCAACCATGCGA
GATCTGGTGCTGATTTCCCAAGTTTTTATGGATTAGATCTTCATCGGGAT
TACCATGGAATGAGTGAGCCTGACCGATCACAAAAAGGAAATTACAGTAG
CAATCTGTTTGCTTCTGAAGCTATTGACATCATCGAGAAACACCAGGAAG
AACAACCTCTCTTTCTTTATCTACCATTCCAAAACGTTCACGTTCCTTTA
CAAGCGCCCAAAGAAACCATTGATAAATTTTCGTACATTGAGGATAAAAA
TCGAAGAACGTTTGCAGCAATGATGTCCAAACTTGATGATGCCATTGGAC
AGGTTCATCAAGCGTTGGAGGAGAAAGGTATTTTGGATAATACCATCATC
ATCTTTACTTCTGATAATGGTGCCATTTCAACGGAAGGATTTTCAAGCAA
TTATCCTCTGCGAGGTGTAAAACACATGGTGTTCGAAGgtGCAGTCCGAG
TGCCAGCTTTTATCAACAGTCCACTTTTGAAAAGATCAGGTGTTACTTCA
ATGCAAATGATGCATGTTACTGATTGGTTACCAACTATCGTCAACCTTGC
TCAagggaaaatcacaaaagaaattgatggttttgatcaatggaagacat
tgcaagaTGACGTTGAATCACCAAGGAAAGAAATCTTGTTGAATATCGAT
AATGTGGAGTTTCGACAAGAAGGTTTGATTTCTGGAGAATGGAAAATTAT
TATCGACAGTGAGCACGATATTTATGCATCAGACGGTTGGATCAAAGCCC
CAGGATACAATGCCACTGGAAAAGCAAAAACGGTTATCAAATGTGGTCAT
AAACCTGACAAAACAACACATTGCAACGAGACACATTGTCTGTTCAATCT
ACATAACGATCCTTGTGAATATAATGATGTTTCAAGTCAATATCCTGAAA
TTTatcaacaaatgaaaaaaaaacttgaagatTATAAAAAGGGAATGGTC
CCTAATCGAAACAAGCCAGGAGATAAAATGGCAGATCCCAAACTACACAG
TGGTGTTTGGGGACCTTGGATTAAGCTTTGATAGCTACTTAAGCTGAATT
TGGTAGAATGTTGCCTTTTTTGAATGGAATGTCACAAAGGCATTAATTGC
TTTAAGCTTTATACTGTACTCATTTATTTTGTGCTAGAACGTTGTCAAGT
ATTCTTTGAAGCTATATGGCCAATCCAATCCTTGTAGGGTTTAGATTGTA
AACTTTTACTATTATTTATTGTCATAATCTTTTTAGGTAGTTAATGTACT
TTTTTGTGGTAGATATCTTAACaccttttttatgaattttcgtATTTAAT
TTAACgcattgtaaatttttatagGATCTCGAGCAAAACACTTTTC

Run BLAST on NCBI

transcript from alignment at sc0000091:71003..74700-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00009248 ID=TCONS_00009248|Name=TCONS_00009248|organism=Clytia hemisphaerica|type=transcript|length=3698bp|location=Sequence derived from alignment at sc0000091:71003..74700- (Clytia hemisphaerica)
CAAATGTGTGTTCAGACTCTCCACGTAACTTTCAGTTCAATTATAATAAT
GCATTGCCCTGCATTAGGTTTATAAAATGTCCGGTCTGCTACTTTTTTGG
AAAAGATTTACATGCCCTACTCTTTTCCATAGAGCTTAACTTATAATACT
AACCTAAAAAACGTAAAAGAAAGTGAAAATGATAACCTGCTGGTTCATTT
TACTGGTATTATACAGTGGCGTTTTTAGGGCGGAGAAGCCACCCAATATT
GTTTTGATGGTTGCTGATGACTTGGTATGTTCTTTAAAGATCTTTTCATA
AATTATGATTCTTTCTTTTCTTTGAAGATGTACACACTTTAGTTTGTGTT
TTTCATTCGTGTATTTGCTGTAACTGAACACAGCTGTAATTTAAGAATTT
GCCCTAAAGCGACTTTTTCGCCCGAACTTTAAATTGCTGAAAACGAGGAA
TTCCCAATCCAAAATTCCCAATATATTTTGACCAAGATTGTACTTGTTAC
CTATTTTAACGTTATTTTTCAGGGTTGGACAGATGTTGGATTCCATGGAT
CAGATCAAATTCCAACACCGAATATTGATAAATTGGCAAAAGAAGGAATT
ATTTTAAATAATTATTATGTGCAACCAATCTGTTCTCCAACGAGAAGTGC
TCTGATGACTGGAAGATATCCAATTCACACTGGTTAGTTGGTTATACTAA
CAATCAGGACTTTTTACTGGTTTATTGTTGAAATTACTGAGTACATTTAA
GTTAACGCTTACGGATCTGTTTATTTTGTCTGGATAAAGAATTTTTCGTT
TAGAAAATGCCCGTCGAAAAAAAATGCGAAAAGACGATTATTTATGCAAC
ATTGAATTTTTTTCTCTCTATCTTATAGGCATGTACCACAATACAATTTA
TGTGGAAGAACCTTGGGGTCTTCCCCTTGAAGAGAAAATCCTGCCACAAT
ATTTAAAGGATATGGGGTATGCTACACACGCCGTTGGAAAGGTTCGTAAT
TATAATTTTTACCATAGAAAGGTGTAAGAAAATAGATTGGTCCTACATAT
AAANGTTATAATTTTTACCATAGAAAAGTGTAAGAAAATAGATTGGTCCT
ACACGAAAAATATATACAGAATGACCATTAAAATGTTTTTTAAATTATTG
GTCCTACATATAAAACCTTTCATTAACATTATGATCTTGACGGTAAAATC
TTCTCCTTTATTTTCCAGTGGCACCTTGGTTACTTTGCCAAAGAATACAC
ACCAACCTATCGAGGATTCGATTCATATTACGGATATTATTGCGGTGCGG
AAGACTATTTCAACCATGCGAGATCTGGTGCTGATTTCCCAAGTTTTTAT
GGATTAGATCTTCATCGGGATTACCATGGAATGAGTGAGGTAGGTTGTTA
ATATTCAAATCTTTGTCTGTAAAGGGCTGGGAACAAGTCCTGAGGGGGAT
GGGGCACTCAAGGTAAATGACCAATCATATTTATTTTCCAAGTTCCAAAG
TGCACTGTAAGGGTCGAAATCAGCAAAGATGAGAAAAATTGGGGAACAAG
TTAAACTTGGAACTTTACTGCAATTAATTAAAAAGAGTCCGATTACCTTA
TTCCATGTTATATAACATAATTTAACGTTAAATTAAGATCTCCAGCCACT
TGCCTAACTCAGCATTTTTTAACATAAGAAAGAGCAACGTTTCCCAATTT
TTCCCGCGCCGTGTGAGCACAGAGACCATCAAACAATTTCATGACATTTT
TTCTCTTCTACAGCCTGACCGATCACAAAAAGGAAATTACAGTAGCAATC
TGTTTGCTTCTGAAGCTATTGACATCATCGAGAAACACCAGGAAGAACAA
CCTCTCTTTCTTTATCTACCATTCCAAAACGTTCACGTTCCTTTACAAGC
GCCCAAAGAAACCATTGATAAATTTTCGTACATTGAGGATAAAAATCGAA
GAACGTTTGCAGCAATGATGTCCAAACTTGATGATGCCATTGGACAGGTA
TTACTTCTTCGTAAACTTCTTTAAATGCATTAGAACAGTAATAGTCTCTT
AAAGTAGCAGTGTAGTAGTGTAGTGGTTATCGTTCTCGGCTTCTGGCGGG
ACTTTAGGGTTCGATTTCCACTCGGTGAAACGATTCATTTGACATGTTAA
CCATGCAGCTTCGGTTCAACCCATTAATCTTGTAAACTATTCTAAACGTC
TTTCAGAAACTTACAGACTTAACGTTTTTTAGGTTCATCAAGCGTTGGAG
GAGAAAGGTATTTTGGATAATACCATCATCATCTTTACTTCTGATAATGG
TGCCATTTCAACGGAAGGATTTTCAAGCAATTATCCTCTGCGAGGTGTAA
AACACATGGTGTTCGAAGGTAATGTTTTATCAACAACCGGAAGCATTAAA
CGAAATTTCTTTAAGCAACCTACTCATACTATTCTAAAACAATAAAATTT
TAGGTGCAGTCCGAGTGCCAGCTTTTATCAACAGTCCACTTTTGAAAAGA
TCAGGTGTTACTTCAATGCAAATGATGCATGTTACTGATTGGTTACCAAC
TATCGTCAACCTTGCTCAAGGGAAAATCACAAAAGAAATTGATGGTTTTG
ATCAATGGAAGACATTGCAAGATGACGTTGAATCACCAAGGAAAGAAATC
TTGTTGAATATCGATAATGTGGAGTTTCGACAAGAAGGTTTGATTTCTGG
AGAATGGAAAATTATTATCGACAGTGAGCACGATAGTAAGTTATAAAGTT
TTTATCCTGGTCTAGGATCTGATATCTTAATGTACGCCAGTCGTAAAGGG
GGTAATTAAGCGAAAAGAGGTACACGAGTGTGCCACTTGACCTATTTTTC
GTCTCTATCAGTTAGTACCAGGTAGGATCTCACGAAAATTACAAAAGAAA
GACACAACATTGAAAAATTACTTCCTTGTTCAGGTTGCCTTTTTGGATTT
TAGTCCCTTTGAGCTCACTAATTTGAAAATTGATAAAATGAGTCCTTTGT
AGTTTAATTCATTTTACTCATGAGATCAAAAAGTAACGAGGTGAAACCTA
CATCTAATATTTTAACATTCAGTTTATGCATCAGACGGTTGGATCAAAGC
CCCAGGATACAATGCCACTGGAAAAGCAAAAACGGTTATCAAATGTGGTC
ATAAACCTGACAAAACAACACATTGCAACGAGACACATTGTCTGTTCAAT
CTACATAACGATCCTTGTGAATATAATGATGTTTCAAGTCAATATCCTGA
AATTTATCAACAAATGAAAAAAAAACTTGAAGATTATAAAAAGGGAATGG
TCCCTAATCGAAACAAGCCAGGAGATAAAATGGCAGATCCCAAACTACAC
AGTGGTGTTTGGGGACCTTGGATTAAGCTTTGATAGCTACTTAAGCTGAA
TTTGGTAGAATGTTGCCTTTTTTGAATGGAATGTCACAAAGGCATTAATT
GCTTTAAGCTTTATACTGTACTCATTTATTTTGTGCTAGAACGTTGTCAA
GTATTCTTTGAAGCTATATGGCCAATCCAATCCTTGTAGGGTTTAGATTG
TAAACTTTTACTATTATTTATTGTCATAATCTTTTTAGGTAGTTAATGTA
CTTTTTTGTGGTAGATATCTTAACACCTTTTTTATGAATTTTCGTATTTA
ATTTAACGCATTGTAAATTTTTATAGGATCTCGAGCAAAACACTTTTC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005177	XLOC_005177	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000091	supercontig	sc0000091:71003..74700 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.79892	8.26437	6.34524	4.40216	3.58494	2.54709	6.04944	4.92211	6.94969	7.17631	6.73966	9.97801	5.75233	5.5056	6.53383	9.57634	4.24406	5.79532	5.66071	4.53066	5.10656	5.04538	7.95042	7.02339	7.4078	6.08788	4.69267	5.10497	7.96336	6.52251

Blast

[Close]

BLAST of TCONS_00009248 vs. Swiss-Prot (Human)
Match: ARSB (Arylsulfatase B OS=Homo sapiens GN=ARSB PE=1 SV=1)

HSP 1 Score: 394.815 bits (1013), Expect = 9.697e-129
Identity = 214/506 (42.29%), Postives = 302/506 (59.68%), Query Frame = 2

Query:  230 AEKPPNIVLMVADDLGWTDVGFHGSDQIPTPNIDKLAKEGIILNNYYVQPICSPTRSALMTGRYPIHTGMYHNTIYVEEPWGLPLEEKILPQYLKDMGYATHAVGKWHLGYFAKEYTPTYRGFDSYYGYYCGAEDYFNHARSGADFPSFYGLDLHR---DYHGMSEPDRSQKGNYSSNLFASEAIDIIEKHQEEQPLFLYLPFQNVHVPLQAPKETIDKFSYIEDKNRRTFAAMMSKLDDAIGQVHQALEEKGILDNTIIIFTSDNGAISTEGFSSNYPLRGVKHMVFEGAVRVPAFINSPLLKRSGVTSMQMMHVTDWLPTIVNLAQGKI--TKEIDGFDQWKTLQDDVESPRKEILLNID------------NVEFRQEGLISGEWKIIIDSEHDIYASDGWIKAPGYNATG--------KAKTVIKCGHKPDKTTHCNETHCLFNLHNDPCEYNDVSSQYPEIYQQMKKKLEDYKKGMVPNRNKPGDKMADPKLHSGVWGPWI 1672
            A +PP++V ++ADDLGW DVGFHGS +I TP++D LA  G++L+NYY QP+C+P+RS L+TGRY I TG+ H  I+  +P  +PL+EK+LPQ LK+ GY TH VGKWHLG + KE  PT RGFD+Y+GY  G+EDY++H R          L++ R   D+    E     K  YS+N+F   AI +I  H  E+PLFLYL  Q+VH PLQ P+E +  + +I+DKNR  +A M+S +D+A+G V  AL+  G+ +NT+ IF++DNG  +  G  +N+PLRG K  ++EG VR   F+ SPLLK+ GV + +++H++DWLPT+V LA+G    TK +DGFD WKT+ +   SPR E+L NID            ++   ++     E+     S H       W    GY   G           + I     P KT        LF++  DP E +D+S +YP I  ++  +L+ Y K  VP      D   DPK  +GVWGPW+
Sbjct:   41 ASRPPHLVFLLADDLGWNDVGFHGS-RIRTPHLDALAAGGVLLDNYYTQPLCTPSRSQLLTGRYQIRTGLQHQIIWPCQPSCVPLDEKLLPQLLKEAGYTTHMVGKWHLGMYRKECLPTRRGFDTYFGYLLGSEDYYSHERCTL----IDALNVTRCALDFRDGEEVATGYKNMYSTNIFTKRAIALITNHPPEKPLFLYLALQSVHEPLQVPEEYLKPYDFIQDKNRHHYAGMVSLMDEAVGNVTAALKSSGLWNNTVFIFSTDNGGQTLAG-GNNWPLRGRKWSLWEGGVRGVGFVASPLLKQKGVKNRELIHISDWLPTLVKLARGHTNGTKPLDGFDVWKTISEGSPSPRIELLHNIDPNFVDSSPCPRNSMAPAKDDSSLPEYSAFNTSVHAAIRHGNWKLLTGYPGCGYWFPPPSQYNVSEIPSSDPPTKTL------WLFDIDRDPEERHDLSREYPHIVTKLLSRLQFYHKHSVPVYFPAQDPRCDPKA-TGVWGPWM 533

The following BLAST results are available for this feature:

BLAST of TCONS_00009248 vs. Swiss-Prot (Human)

BLAST of TCONS_00009248 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ARSB	9.697e-129	42.29	Arylsulfatase B OS=Homo sapiens GN=ARSB PE=1 SV=1	[more]

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TCONS_00009248 (transcript) - C. hemisphaerica