TCONS_00009245 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009245
Unique NameTCONS_00009245
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1297

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009245 ID=TCONS_00009245|Name=TCONS_00009245|organism=Clytia hemisphaerica|type=transcript|length=1297bp
ACATTTTACGGATACTACAATGGAGCTGAGGATTATTTTTACCACAACAG
ATCTGGCTatcattttccaaaatttcatggTCTTGATCTTCACCATGACG
TAGAAGGAGATCAACAGCCAGTGCGAACACAGGACGGTAATTACAGCACC
TACATGTATTCGGATGAAGCAATCACTACAATCAACCAACATCCAACAGA
AAGACCTCTTTTCCTGTACCTTCCTTTCCAAAATGTCCATGGCCCTCTGA
TGGCACCTCAAGAAACTATTGATAAATTTTCAtacatcgaagataaaaaa
agaagaGTGTTAGCTGCAATGGTATCACAATTAGATGATGCTATCGGTCG
AATAAACGGTGCGTTGGAAGCCAAGGGCATTCTAGAAAACACAGTGATCA
TTTTCACTTCAGATAACGGTGCACCCTCAGGACAAGGGATGGGAAGTAAC
TATCCCCTTAGGGGTGAAAAATTCATGGTCTTTGAAGGTGGTGTTCGAGT
GCCAGCGTTTATCAACAGTCCACTTTTGAAAAGATCAGGTGTTACTTCAA
TGCAAATGATGCATGTTACTGATTGGTTACCAACTATTGTCAACCTTGCT
CAAGGGgaaatcacaaaagaaattgATGGTTTGGAtcaatggaagacatt
gcaaagtGATGTTGAATCGCCAAGGAAAGAAATCTTGTTGAATATCGATA
ATGTGGAGTTTCGACAAGAAGGTTTGATTTCTGGAGAATGGAAAATTATT
ATCGACAGTGAACATGACATTTATGCATCAGACGGTTGGATCAAAGCCCC
AGGATACAATGCCACTGGAAAAGCAAAAACGGTTGTCAAATGTGGTCATA
AACCTGACAAAACAACACATTGCAATGAAACACATTGTCTGTTCAATCTA
CAAAACGATCCTTGTGAATATAATGATGTTTCAAGTCAATATCCTGAAAT
TTatcaacaaatgaaaaacaaacttGAAGATTACAAAAAGGGAATGGTCC
CTAATCGAAACAAGCCAGGAGATGAAAATGCAGATCCCAAACTACACAAT
GGTGTTTGGGGGCCTTGGATCAAGCTTTGATAACTACTTAAGCTGAATTT
GGTAGAATattgccttttttgaaaaatgtcacgAACACAATTCATTGTTT
TTAGCTTTATACTATTTATCTTGTGATAGAACGTGTCTCAATCTTTTCAG
GTATTTATTGTACTTTTTTGTGGTAAATATCTTGACatcttttttatgaa
ttttcgtATTTAATTTAACgcattgtaaatttttatagGATCTCGAG
Run BLAST on NCBI

transcript from alignment at sc0000091:66473..68850-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009245 ID=TCONS_00009245|Name=TCONS_00009245|organism=Clytia hemisphaerica|type=transcript|length=2378bp|location=Sequence derived from alignment at sc0000091:66473..68850- (Clytia hemisphaerica)
ACATTTTACGGATACTACAATGGAGCTGAGGATTATTTTTACCACAACAG
ATCTGGCTATCATTTTCCAAAATTTCATGGTCTTGATCTTCACCATGACG
TAGAAGGAGATCAACAGGTATTCGCTCAATAACCAATAACCATCAGATAG
TGACGAGTTCTTGAAAATTGTTGAAGGAGGCAAAAATCATCAGTCAAAAT
TAATTAAACCTAACGCTTGAGTTACCAGTGCCATAAATGTAATGTCGAAA
TAACTTTCAACAATTTTTGTCATACAGCCCTGATAAATACTAACTCAATC
TCGCTTCAAATAGCTTTTGACCAGATTATTTCATGGCGTATTTAACATTT
TAGCGTAATTCTCCAACTCTAGTTTCATTTTTCATTTTGCCGGTCTATTA
TTTAGCCAGTGCGAACACAGGACGGTAATTACAGCACCTACATGTATTCG
GATGAAGCAATCACTACAATCAACCAACATCCAACAGAAAGACCTCTTTT
CCTGTACCTTCCTTTCCAAAATGTCCATGGCCCTCTGATGGCACCTCAAG
AAACTATTGATAAATTTTCATACATCGAAGATAAAAAAAGAAGAGTGTTA
GCTGCAATGGTATCACAATTAGATGATGCTATCGGTCGAGTAAGTCGAAA
CTTTTTTTCAAATTTCCAAATGATATGAAACGAATTTTGGGAATCATATT
GCGTTCATTGTAAATGTGTTTTGATATTTTTGCCTGGTTTGGCATGATCA
AAAACTTTTCAGTTTTTCATTCAACATTTCATCCAACATTTGAACAAAAT
GTTGGATGAAATGTTGGAGTGGTGTGCTCCGGCCTTTAGTCGCCTATATA
ATACAACATTCCAGTAAAAGCTCTTAAATTCAAGCTTTAAACAAGTATGT
ATGTTACATTATTTTCTAGATAAACGGTGCGTTGGAAGCCAAGGGCATTC
TAGAAAACACAGTGATCATTTTCACTTCAGATAACGGTGCACCCTCAGGA
CAAGGGATGGGAAGTAACTATCCCCTTAGGGGTGAAAAATTCATGGTCTT
TGAAGGTATTCAAAAAATTCTTCATTATTTTAGTCTCCACCTTTATATGT
CCAATCCAACATATAGTACCTGCTAATTATGGTACCTTTTTGTCTTTTTA
TACAGATTTATGATTTAACATTTTCGTTTATTTATGGAAAATTTCTAAAG
GTGGTGTTCGAGTGCCAGCGTTTATCAACAGTCCACTTTTGAAAAGATCA
GGTGTTACTTCAATGCAAATGATGCATGTTACTGATTGGTTACCAACTAT
TGTCAACCTTGCTCAAGGGGAAATCACAAAAGAAATTGATGGTTTGGATC
AATGGAAGACATTGCAAAGTGATGTTGAATCGCCAAGGAAAGAAATCTTG
TTGAATATCGATAATGTGGAGTTTCGACAAGAAGGTTTGATTTCTGGAGA
ATGGAAAATTATTATCGACAGTGAACATGACAGTAAGCTATTACTTTTTT
ATCCTAGCCCTGGATATAAATACTTTTAATGTTGGTCCTGGATTTAGATA
CTTTTTTGATGTTTTAAATGTACGCAAGTCGGGAAAGGGATAATTAAGCA
AAAAGAGGTACATGAATGTGCTACTTGGCCTACCTTCCGTCTCTACCAGT
TAGTACCAGGTAGGATTTCACGAAAATCGCAAAAAAGTGAAAAATCAGTT
CCTCGTTCGGTTGTCTTTTTGGGATTTTAGTCCCTTTGAGCTCACTAATC
TGAAAATTGATAAAATAGACCCTTCGTAGTTTAATTCATTTTATTCATGT
GATAAAAAAGTAACGAGGGAGATACTTACATCTAATATTATATTATTTAG
TTTATGCATCAGACGGTTGGATCAAAGCCCCAGGATACAATGCCACTGGA
AAAGCAAAAACGGTTGTCAAATGTGGTCATAAACCTGACAAAACAACACA
TTGCAATGAAACACATTGTCTGTTCAATCTACAAAACGATCCTTGTGAAT
ATAATGATGTTTCAAGTCAATATCCTGAAATTTATCAACAAATGAAAAAC
AAACTTGAAGATTACAAAAAGGGAATGGTCCCTAATCGAAACAAGCCAGG
AGATGAAAATGCAGATCCCAAACTACACAATGGTGTTTGGGGGCCTTGGA
TCAAGCTTTGATAACTACTTAAGCTGAATTTGGTAGAATATTGCCTTTTT
TGAAAAATGTCACGAACACAATTCATTGTTTTTAGCTTTATACTATTTAT
CTTGTGATAGAACGTGTCTCAATCTTTTCAGGTATTTATTGTACTTTTTT
GTGGTAAATATCTTGACATCTTTTTTATGAATTTTCGTATTTAATTTAAC
GCATTGTAAATTTTTATAGGATCTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005177XLOC_005177Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009245-exon-sc0000091-1575043694:68734..68850TCONS_00009245-exon-sc0000091-1575043694:68734..68850Clytia hemisphaericaexon
TCONS_00009245-exon-sc0000091-1575043694:68212..68445TCONS_00009245-exon-sc0000091-1575043694:68212..68445Clytia hemisphaericaexon
TCONS_00009245-exon-sc0000091-1575043694:67796..67931TCONS_00009245-exon-sc0000091-1575043694:67796..67931Clytia hemisphaericaexon
TCONS_00009245-exon-sc0000091-1575043694:67369..67650TCONS_00009245-exon-sc0000091-1575043694:67369..67650Clytia hemisphaericaexon
TCONS_00009245-exon-sc0000091-1575043694:66473..67000TCONS_00009245-exon-sc0000091-1575043694:66473..67000Clytia hemisphaericaexon
TCONS_00009245-exon-sc0000091-1510915933:68734..68850TCONS_00009245-exon-sc0000091-1510915933:68734..68850Clytia hemisphaericaexon
TCONS_00009245-exon-sc0000091-1510915933:68212..68445TCONS_00009245-exon-sc0000091-1510915933:68212..68445Clytia hemisphaericaexon
TCONS_00009245-exon-sc0000091-1510915933:67796..67931TCONS_00009245-exon-sc0000091-1510915933:67796..67931Clytia hemisphaericaexon
TCONS_00009245-exon-sc0000091-1510915933:67369..67650TCONS_00009245-exon-sc0000091-1510915933:67369..67650Clytia hemisphaericaexon
TCONS_00009245-exon-sc0000091-1510915933:66473..67000TCONS_00009245-exon-sc0000091-1510915933:66473..67000Clytia hemisphaericaexon
TCONS_00009245-exon-sc0000091-1491911889:68734..68850TCONS_00009245-exon-sc0000091-1491911889:68734..68850Clytia hemisphaericaexon
TCONS_00009245-exon-sc0000091-1491911889:68212..68445TCONS_00009245-exon-sc0000091-1491911889:68212..68445Clytia hemisphaericaexon
TCONS_00009245-exon-sc0000091-1491911889:67796..67931TCONS_00009245-exon-sc0000091-1491911889:67796..67931Clytia hemisphaericaexon
TCONS_00009245-exon-sc0000091-1491911889:67369..67650TCONS_00009245-exon-sc0000091-1491911889:67369..67650Clytia hemisphaericaexon
TCONS_00009245-exon-sc0000091-1491911889:66473..67000TCONS_00009245-exon-sc0000091-1491911889:66473..67000Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:66473..68850 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
25.9189	24.066	26.1289	23.9091	3.63997	4.18274	6.85171	7.15666	10.9458	11.4055	10.4655	14.3012	10.4414	9.61067	9.09404	10.3366	5.61295	7.35406	6.6671	6.35205	6.15593	5.46731	13.9229	12.5188	17.1081	15.6571	6.42483	5.55489	8.27772	8.60859
Blast
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BLAST of TCONS_00009245 vs. Swiss-Prot (Human)
Match: ARSB (Arylsulfatase B OS=Homo sapiens GN=ARSB PE=1 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 6.511e-69
Identity = 137/376 (36.44%), Postives = 201/376 (53.46%), Query Frame = 1 
Query:    1 TFYGYYNGAEDYFYHNRSGYHFPKFHGLDLHHDVEGDQQPVRTQDGNYSTYMYSDEAITTINQHPTERPLFLYLPFQNVHGPLMAPQETIDKFSYIEDKKRRVLAAMVSQLDDAIGRINGALEAKGILENTVIIFTSDNGAPSGQGMGSNYPLRGEKFMVFEGGVRVPAFINSPLLKRSGVTSMQMMHVTDWLPTIVNLAQGEI--TKEIDGLDQWKTLQSDVESPRKEILLNID------------NVEFRQEGLISGEWKIIIDSEHDIYASDGWIKAPGYNATG-----KAKTVVKCGHKPDKTTHCNETHCLFNLQNDPCEYNDVSSQYPEIYQQMKNKLEDYKKGMVPNRNKPGDENADPKLHNGVWGPWI 1071
            T++GY  G+EDY+ H R        +      D    ++        YST +++  AI  I  HP E+PLFLYL  Q+VH PL  P+E +  + +I+DK R   A MVS +D+A+G +  AL++ G+  NTV IF++DNG  +  G G+N+PLRG K+ ++EGGVR   F+ SPLLK+ GV + +++H++DWLPT+V LA+G    TK +DG D WKT+     SPR E+L NID            ++   ++     E+     S H       W    GY   G      ++  V      D  T   +T  LF++  DP E +D+S +YP I  ++ ++L+ Y K  VP      D   DPK   GVWGPW+
Sbjct:  164 TYFGYLLGSEDYYSHERCTL-IDALNVTRCALDFRDGEEVATGYKNMYSTNIFTKRAIALITNHPPEKPLFLYLALQSVHEPLQVPEEYLKPYDFIQDKNRHHYAGMVSLMDEAVGNVTAALKSSGLWNNTVFIFSTDNGGQTLAG-GNNWPLRGRKWSLWEGGVRGVGFVASPLLKQKGVKNRELIHISDWLPTLVKLARGHTNGTKPLDGFDVWKTISEGSPSPRIELLHNIDPNFVDSSPCPRNSMAPAKDDSSLPEYSAFNTSVHAAIRHGNWKLLTGYPGCGYWFPPPSQYNVSEIPSSDPPT---KTLWLFDIDRDPEERHDLSREYPHIVTKLLSRLQFYHKHSVPVYFPAQDPRCDPKA-TGVWGPWM 533
The following BLAST results are available for this feature:
BLAST of TCONS_00009245 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARSB6.511e-6936.44Arylsulfatase B OS=Homo sapiens GN=ARSB PE=1 SV=1[more]
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