TCONS_00009235 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009235
Unique NameTCONS_00009235
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1894

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009235 ID=TCONS_00009235|Name=TCONS_00009235|organism=Clytia hemisphaerica|type=transcript|length=1894bp
cgcagtatttatattttttgtagaAAGCTTAGCATAAACTTTTTACGATG
TATTATTTcttttacttgcttttattttgtattgttGGATATGCTTTGGT
GAAAAGTGAGCAGCCTCCAAACGTTGTTCTTATTGTAGCTGATGATTTGG
GTTGGACAGATGTTAGTTTCCATGGCtgcgatcaaatcaaaacaccGAAT
ATTGATAAATTGGCAAAAGAAGgaattattttgaataattattaTGTGCA
ACCAATTTGTACTCCAACGAGAAGTGCTCTGATGACTGGGAGATATCCTA
TACATACTGGTATGCAGCATGGTGTCCTTCTCGCTTCTGAACCTTGGGGT
CTCTCTTTGGATGAGAAAACCCTTCCACAGTATTTGAAAGAAATGGGATA
TGCTACACACGCCATTGGAAAATGGCATCTTGGTATGTTTGCCAAAGAAT
ACACACCAACATACAGAGGCTTCGATACATTTTATGGATATTACAATGGA
GCTGAGGATTATTTTTACCACAACAGATCTGGCTATCATTTCCCTCAATA
CAGCGGTGTAGATCTTCACCATGCAGTCCATGAGCAGATGACGCATGATT
GGTTTCAAGACGGACATTACAGTGGAGATCTGTTCACCTCCAAAGCTATC
GATATCATTCAAGACCATCCAACTACAGATCCATTGTTTCTTTACTTACC
ATTCCAAAATGTCCACGATCCTTGGGACGCACCAAAAGAATGGGTAGATA
AATtctcaaacaaaattgaagatgAACAACGGAGAACTTTTGCAGCCATG
GTTGGGGCCTTAGATGAAGCTATTGGCAAAATTTACGAAGCTTTGGACGA
GAAAAATATGCTAGATAATTCCATTATTATTTTCACATCTGATAACGGTG
GCATCCCTACAGATGGTCATTCAAGTAATTTTCCACTGCGAGGGCAAAAA
TGGAATGCTTACGAAGGTGGCGTTCGAGTGCCAGCATTTATCAACAGTCC
ACTTTTGAAAAGATCAGGTGTTACATCAATGCAAATGATGCATGTTACTG
ATTGGTTACCAACTATCGTCAACCTTGCTCAagggaaaatcacaaaagaa
attgatggttttgatcaatggaagacattgcaaagtGATGTTGAATCACC
AAGGAAAGAAATCCTGTTGAATATTGACGATATTTTCAACCAAGAGGCTC
TTATAGTTGGAGAATGGAAGATTTTAACAGATTtTGTACATCGTTCTACT
CGGAAGAAGGATACAATTGATCATGGATATCAAGATGGATGGATCAAAGC
TCCAGGGCACAATTCAACGGGAAAGGCTACTTCACCTGTCAATTGTGGTT
CAAAACCTGAAAAAGTAACACATTGCATCGAAACACATTGTCTATTCAAT
CTACAAAACGATCCTTGTGAATATAACGATGTTTCAAGTCAATATCCTGA
AATTTatcaacaaatgaaaaacaaacttGAAGATTATAAAAAGGGAATGG
TGCAAAGTCGAAAACAACCTGGAGACAAAATGTCGGATCCTCAATTGAAT
GGAGGTTTTTGGGGACCATGGAAAGAATTGTAATTTGGATTTGACGGCTG
TTGAGATTTTCTATAACAACACTATATTCGCATCACAACACAGGGCCCAC
CCTcactttttgcaaagtaaaaTTTTTGTTGCGCCTCCTTATATTcattc
ccccccccccgtttcAAATTCAAGGCGTGGGTCCTGCACACCAATAGACT
AGAGAAACAATCTATATACATTAATATTTACGATAGAAGCTGTTTcccat
tttacaattttcgtacacatttttatataccttcatatagaattttttta
atattttggtacAAATAAATTCAATCATTCAATGATGAAGCGAC
Run BLAST on NCBI

transcript from alignment at sc0000091:54398..62633-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009235 ID=TCONS_00009235|Name=TCONS_00009235|organism=Clytia hemisphaerica|type=transcript|length=8236bp|location=Sequence derived from alignment at sc0000091:54398..62633- (Clytia hemisphaerica)
CGCAGTATTTATATTTTTTGTAGAAAGCTTAGCATAAACTTTTTACGATG
TATTATTTCTTTTACTTGCTTTTATTTTGTATTGTTGGATATGCTTTGGT
GAAAAGTGAGCAGCCTCCAAACGTTGTTCTTATTGTAGCTGATGATTTGG
TAAGTACTTTCATTTACTGGTTTTTAATTTGATTCTCAGATTTTCAAATT
TATATTGAAATGTTTACAATTTCTTTTCCAGGGTTGGACAGATGTTAGTT
TCCATGGCTGCGATCAAATCAAAACACCGAATATTGATAAATTGGCAAAA
GAAGGAATTATTTTGAATAATTATTATGTGCAACCAATTTGTACTCCAAC
GAGAAGTGCTCTGATGACTGGGAGATATCCTATACATACTGGTTAGTCTT
TTTCTCGTGCTTCCAGGGCCCGCGCCACCGGGGGACCAGGAGTGCCATGG
CCCCCACTTTTGCAAAGTAAAAATTTTTGGTTGCGCCTCCTTAAACTCTT
TATTTATTGCCCCCCTCACTTTCAATTTCATGGCGTGGGCCCTGGCTTCG
CCTTTAACGATCATGGCCATTTTGTCCCTATTTTTTAATATATTTCAAAC
AATATATTCTTTTCTTTGAAGGTATGCAGCATGGTGTCCTTCTCGCTTCT
GAACCTTGGGGTCTCTCTTTGGATGAGAAAACCCTTCCACAGTATTTGAA
AGAAATGGGATATGCTACACACGCCATTGGAAAAGTAAGGCTTTCTGTAA
CCTTGTTCCATCTTTTTCGAGTACTTTTTTGTATTTCGTTAATGCTTTAA
AGGAATAACCAGCTACTTTCGTTTTCAGATATGTCATGGTGTACCTAATT
CTGTAGAGTAATTTCTCCTACGTTATAATTATAAGATATAACTAAAATAG
AATTAGGGACTTTGGCTTGAAAAGGAGACGAATTAACTTGTATCTACCCC
AAAAGGTTATTTGAAGCCAAAATTTTGATGATATTTTTTAATTGCAACAT
TTTCGAAGTATATTGTAAGTGAGTTTTCAGAAATTACTTTATGGCCGATC
TGAAAATTAAATGTTGTTCGTTATCCCTTAACATACATTTTCTTTCTTTT
TTTTCCTTGTAGTGGCATCTTGGTATGTTTGCCAAAGAATACACACCAAC
ATACAGAGGCTTCGATACATTTTATGGATACTACAATGGAGCTGAGGATT
ACTACTATCATAATGTGTCGGATATGCACTTTCCTCAATATAGCGGATTG
GATTTAAGGAAAGATTCAAATGGTCAAAGCCAGGTTAGATCGCTGATTGT
TTGGAATAAAAATTACGTTAATACACCTCTGTCTCTGCGTAGATTTTTCT
CATGGACATTTTTAACACCATTCCTGGTAGAAGTTTTTTACGTTTTATCC
GCCATTATGGAAGCCATCGTTCGAATCTGTACAGGCGATCCCTTACGCAA
TTCGAACGTTTGCTTCCATAATGACGGAAATTGCTTACGGAAATTTAGTA
ACGTTTGCCAACCACCTTACCCACTCTAAGCTTTTCAATAGATTATTTTT
ATTTCTATTTTCTCAAACAAAGTTGATGCTTATTTTCTATTTCTTTTCAG
CCAGTTTGGACTCAAAGCGGAAATTATAGCAGCTTTGTGTTTGCAGAAGA
AGCTGTTAATGTGATTTCAAGCCAATCAAAAGAACAACCTTTGTTTTTAT
ACCTTCCCTTCCAAAATGTTCATTTCCCATTTGAAGCACCTCAAGAATGG
ATCGATAAATTTTCTTTCATTGAAGATGAAAAGAGAAGAACGTTTGCTGC
AATGGTCGCTCTTTTAGATGATGCAGTAAGAAAAGTAAGGCTCTTTTTAC
ACTTTGAGCCTGATAGTTTTGTTTGTATTGAGACCATGGGTATGATGAAG
CCAAATTATGTAGTCATAAAAGGTACATGTAGATTATAGTAGTCGTTCAT
CAATCTTAATTTTATGTGANTACCATATGTTGATGTAGATTATAGTAGTC
GTTCATCAATCTTAATTTTATGTGATTGGCCCTCTGAACCTACTACTTCT
TTGATCTAGATCTGATCCTTGATAGTTGATATCTAACAATTTAAGGCGTA
GGCGTAGTGATTATCATCCTCCTGGGAGGCGCGAGTTCGTTACCCACCGT
GTCACTACGATTCACTTAGCAAGTAAATATATATCTTCGCCCGGGAAGAC
CTATGCAATGCGAGGGGAATCGGGTACCATTACTCAGATACAAGAGTGTG
GGTAGATTAGACTGGCATTGTGACAAGCCGAGGCACTTCTAAGGTTCGAC
CTCGCGTAAGCATCACTCTCCCGGTGTCGTTCCGTAATTCCTACTCCTTC
GGGAGTAGGACCCATCCCGAATGCGTTCGGAGGGTCTACTCTCGGGTACC
TAATAGCCGGGGGGATTGGAATAAGCGGGGGAATTGGAAAATATCTCGAA
ACTTAATAAGCGGGGGGGGGGTGGAATAAAAATGTCTTGGGTGGAGAATT
TTTGAAAAGGAGGCTAACACAGCATAATTAGGACAAAAGAGGGGAACTTT
CAAAAACATTTTCCCAAAAATTAATAAGCGGGGGGGTTGTAATAAGAATG
TTCTGGGTGGAAAATTTTCGAAAAATTAATTAGCGGGGGGGGGGCCGGCT
ATTAGGTACCCAAGAGTACTTTCTATCATTATATCTNTACTTCTAAGGTT
CGACCTCGCGTTAGCATCACTCTCCCGGTGTCGTTCGAGTGTCATGGTAT
ACGTCATGGCTTTGCAGCTCGCGTATGACAAGTCGCAGTGTCTGTCAGCA
CCGTAATTCCTACTCCTTCGGGAGTAGGACCCATCCCGAATGCGTTCGGA
GGGTCTACTTTCTATCATTATATCTCATATCTTTACCTAACTATTTTTCT
TCAATCTTAAATCTCTTATCTAGATTTATGAAGCTTTGGAAGCTACAGAT
ATGGTTGACAATACTCTGATTATCTTCACTTCTGACAACGGAGGGAGATC
AAGCCAGGGATATGCCAGCAATTTCCCTTTGAGGGGAGAAAAAGGAAAGA
TCTTTGAAGGTAGAGAGCATATATAGTATTTTTTCTCGTATATGTCCGTT
TGAAATTTGGTAAATCCCCTAATACCAATTTACAATTTTGTTTTTTGATA
GGTGGTGTCCGAGTACCAGCATTTATCAACAGTCCACTTTTGAAAAGATC
AGGTGTTACATCAATGCAAATGATGCATGTTACTGATTGGTTGCCAACTA
TCGTCAACCTTGCTCAAGGGAAAATCACAAAAGAAATTGATGGTTTTGAT
CAATGGAAGACATTGCAAAGTGACGTTGAATCGCCAAGAAAAGAAATCTT
GTTGAATATCGATACTGAAGTCGGAGAAGAAGGTCTGATTTTCGATCAGT
GGAAAATTATCAAAGAAAGTAAGACTTTTCTCATTGTTATGTTTGTTAGT
AGTAATTTAGCGACTGTAGTGCAGTGGTAGAGTATCCAACTACGGTGCGC
AAGGTCGTGGGTTCAATCCCGAGCCGGGTCATACCAAAGATTCCCAAAAT
GGTACTTGATGCCTCTCTACTTGATGCTCAGCAATTAAGAGAAGGATCAA
GGGTAAGTGGAGCAATCCAGGGAGAAAGAATGGCGCCCTCCCCTACCTTC
GGGTAGATAGCTATCGAAAGATGAGCCTTCGGGTCACTTCCGACTCCGGT
CGTAGACTTAGTAATAATGGGTATTCGAATTAATTCTATTTGCATTCTGT
ATTTTATTATAACCTAGGAATTGTTGTCGCCTTTGTTTTATATAAATCCA
GAGTAATATGTATTTGACGACATCAATTCATAGTCACAACTGCAGATGGT
TGGATGAAACCTGCCGGATACAACGCCAGTGGAAAAGCAACAACGGTTGT
CGATTGTGGTCCAAAACCTGACAAAATGACACATTGCAATGAAACACATT
GTCTGTTCAATCTACAAAACGACCCTTGTGAATATAATGATGTGTCAAGT
CAATACCCTGAAATTTATCAACAAATGAAAAACAAACTTGAAGATTACAA
AAAGGGAATGGTGCCACCTGTCAATCAACCTGGGGATAAAAATTGCGATC
CAGATTTATTCGGTGGCGTATGGACTCCATGGATTGAATTATAGCCTAGC
TTAACTTTTATTATTGATCTTGTGCTTGCAAATCTTTTATGCTGGGCATT
CTTTGTGCAATTTTTCTTCAATTATGTACATCATCATTGTTAGCATTTTT
TGCTTTCTTTTTCTAACAGCAATTACGTAATTTCTAGTTGGATTAAACCG
TTATACTACAGTGGGAACCGAACTCGGACCTCCCAGACGAGAGTCAAGAG
CGATGACCACCATACCACTACGCCTGATTTGATATAGTGGCAGATCAATT
TTTCACGAAGATTTATTTATTGAAAGTAATGATAAGTAAATACCATGGTA
GAAAAGAACTTGCTGAGTTTTATTTTCTTTTATAGTGCCATTGCCTTTAA
AAACTAAAATAAATTTACTATAATTTGATTTCATCGACGACCATGGAGGT
GTTTTCGTTGATGTTGACTCTGCTGTTGGTATCCTGTCTTCAATTCGCTT
TTGTGGAAAGCGAGCAGCCACCAAATGTGGTTTTCATTTTGGCTGATGAT
TTGGTAAGCTTTTCTAAGTTTTTTGTTGAAAGTTAGTTCAGCCTTTACTG
TTTTATTGATCTTTGAACTTTTGAAATCTTGATTTCTAGGTAGTAACTTT
TCAATCTTTTTATATCAGGGATGGAATGATGTAGGATTTCATGGCTCTGA
TCAAATTGAGACACCAAATATTGATAAACTGGCAAAAGAAGGAATTATTT
TGAATAATTATTATGTGCAACCAATCTGCTGTCCGACGAGAAGTGCTCTG
ATGACTGGAAGATATCCAATTCATACCGGTGAGTTGAATATTTTAACTTT
TCTCATGAGAGTACTATAAAAAAATCGAAATTGTTGTTAACGATTTTTTA
AATGCAGTCTAATAACGTCTAATTCGACGTTATTCTATATGATACACTCC
ATTATTTGATAATATTGAAAGTAACCGTCAGCAAGAAACTCTCGTAAATG
ATACGCTATTCTATTCGATATACTCCCTTATTCGACGGAAATTCAATTCT
TCTTGAACATCGAGTTAGAGAAGGTCAACTTTACTTGTTTTCCTTTCTAT
CAGGAATGTATCACAGTGTTATCCGACCAGAAGAACCTTGGGGTCTTTCT
TTGGATGAGAAGATGTTGCCACAATATTTGAAAGAACAAGGATACACGAC
GCATATGGTTGGAAAGGTGAGTTTTCTGTTTTTATTGTGATCTTTAAAAT
GTCTATATAATAAGAAATAGTATACAGTGTTGACGCTTTCAATTCCCTTC
AAGGGCAATCGGATTTTCATTGAATAAAGAAGTTTATCAAATAGTATAGT
GTCGTTTATGAGAGTTTCTCGTTGATTGGTGCCTATTCAACATTGTGGAA
TAATATGGAGCGTATCGGATAGTAGAACATGGATTTACAGAGCGTCAATT
TAATAATCTCTTTCCTTGCAGTGGCATCTCGGATACTTTGCCAAAGAATA
CACACCAACATACAGAGGCTTCGATACATTTTATGGATATTACAATGGAG
CTGAGGATTATTTTTACCACAACAGATCTGGCTATCATTTCCCTCAATAC
AGCGGTGTAGATCTTCACCATGCAGTCCATGAGCAGATGACGGTACAATA
GTTTATTAGACAATTATGTTTCCAAGTCGGTGTTTTTTACACTTTCGCCA
AAAACGTGACGAGATGGTACTTAACCGTCACAAACCGTACCTACGAAGAA
GAGTTTGATGCAGGTTAGTCAGAATGTAGACTACTAAAAAATTAATTGTC
GTTTTTATAGCATGATTGGTTTCAAGACGGACATTACAGTGGAGATCTGT
TCACCTCCAAAGCTATCGATATCATTCAAGACCATCCAACTACAGATCCA
TTGTTTCTTTACTTACCATTCCAAAATGTCCACGATCCTTGGGACGCACC
AAAAGAATGGGTAGATAAATTCTCAAACAAAATTGAAGATGAACAACGGA
GAACTTTTGCAGCCATGGTTGGGGCCTTAGATGAAGCTATTGGCAAAGTA
AGTGTTTCTCAATTTCATAATTAACATAATTCATTGTTTTGATAGTAAAA
AAATTCAACTTAACTTAACATTAACTACACGCTTTTCTTATTAGAAAAAG
TAAATCTTTGGTATGGTAAGACCCGGCATTTTCTATGATTTTTAGGCCTG
AATTATTCAGGCTTTCATCAATACTTCTTAAATATTCTTAGCACTCACTG
TAGTGACTTGCTTATTGAAATAAAATGAACTTTTTTAGTCATTTTTGAAA
TCTGAGGCTGGAATTATTCTCAATTTGTTCCCAGGTTTTTGCAAAACTGG
GACTAATGTTGTTATAAAAAAAGCGTGTACTGATTCAATGTCAATCAATA
TAGGAGAGGTTTAAAGGTTTTGTTTTTACGTAAGTGTTCCCGTTTCATAT
CAGACAGATATTTGATACGAGAACAGTGTCTGCCTATTGTTATATTATGC
TGATATAAACAAAAAAATGTTTATGTTTTCCTCTTTCTGACCAATCTTGC
TCCACATCCGTGTCAATCTAATGTGAAAAGCGTTTGAATTAAAATTGATG
AGTAAGCAAACGATATCACTCTTGTTTAAAAACAAAGCCTTTAAGCATAT
GTTGTGTCCTTTTTCAGATTTACGAAGCNATCTTGTTTAAAAACAAAACC
TTTAAGCATATGTTGTGTCCTTTTCCAGATTTACGAAGCTTTGGACGAGA
AAAATATGCTAGATAATTCCATTATTATTTTCACATCTGATAACGGTGGC
ATCCCTACAGATGGTCATTCAAGTAATTTTCCACTGCGAGGGCAAAAATG
GAATGCTTACGAAGGTATAGCAAAGAATTACCTTCATTTATGAAAATCAA
TTTCATGTATCTGAAAAAAGGCAATAAAATTTCAATCGAAACTAACAGCT
CAAACAGAAAATTATCAAAAATCTGCCTTAACTCAAAACACAAAAAAACT
AGAAAATAAAGCTTTGGAAGTTCTCAAGATCAATTTGAAATGTGCTATCT
GAAGGACTTTTGACAATAATGATAACCTTTTAGTCAATGTTTTCACAGGT
GGCGTTCGAGTGCCAGCATTTATCAACAGTCCACTTTTGAAAAGATCAGG
TGTTACATCAATGCAAATGATGCATGTTACTGATTGGTTACCAACTATCG
TCAACCTTGCTCAAGGGAAAATCACAAAAGAAATTGATGGTTTTGATCAA
TGGAAGACATTGCAAAGTGATGTTGAATCACCAAGGAAAGAAATCCTGTT
GAATATTGACGATATTTTCAACCAAGAGGCTCTTATAGTTGGAGAATGGA
AGATTTTAACAGATTGTAAGTTTTAGCAGCTTTAAATAAATGTTTTTAAT
TTTCAACAAAATATCTTTGGATGCCGTGCGCTTCTATACTTAAAATCTAA
TCAGTCTTTTAAATTTTCATTTCAGTTGTACATCGTTCTACTCGGAAGAA
GGATACAATTGATCATGGATATCAAGATGGATGGATCAAAGCTCCAGGGC
ACAATTCAACGGGAAAGGCTACTTCACCTGTCAATTGTGGTTCAAAACCT
GAAAAAGTAACACATTGCATCGAAACACATTGTCTATTCAATCTACAAAA
CGATCCTTGTGAATATAACGATGTTTCAAGTCAATATCCTGAAATTTATC
AACAAATGAAAAACAAACTTGAAGATTATAAAAAGGGAATGGTGCAAAGT
CGAAAACAACCTGGAGACAAAATGTCGGATCCTCAATTGAATGGAGGTTT
TTGGGGACCATGGAAAGAATTGTAATTTGGATTTGACGGCTGTTGAGATT
TTCTATAACAACACTATATTCGCATCACAACACAGGGCCCACCCTCACTT
TTTGCAAAGTAAAATTTTTGTTGCGCCTCCTTATATTCATTCCCCCCCCC
CCGTTTCAAATTCAAGGCGTGGGTCCTGCACACCAATAGACTAGAGAAAC
AATCTATATACATTAATATTTACGATAGAAGCTGTTTCCCATTTTACAAT
TTTCGTACACATTTTTATATACCTTCATATAGAATTTTTTTAATATTTTG
GTACAAATAAATTCAATCATTCAATGATGAAGCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005177XLOC_005177Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009235-exon-sc0000091-1575043694:62485..62633TCONS_00009235-exon-sc0000091-1575043694:62485..62633Clytia hemisphaericaexon
TCONS_00009235-exon-sc0000091-1575043694:62243..62402TCONS_00009235-exon-sc0000091-1575043694:62243..62402Clytia hemisphaericaexon
TCONS_00009235-exon-sc0000091-1575043694:61900..62012TCONS_00009235-exon-sc0000091-1575043694:61900..62012Clytia hemisphaericaexon
TCONS_00009235-exon-sc0000091-1575043694:61466..61521TCONS_00009235-exon-sc0000091-1575043694:61466..61521Clytia hemisphaericaexon
TCONS_00009235-exon-sc0000091-1575043694:56892..57006TCONS_00009235-exon-sc0000091-1575043694:56892..57006Clytia hemisphaericaexon
TCONS_00009235-exon-sc0000091-1575043694:56487..56723TCONS_00009235-exon-sc0000091-1575043694:56487..56723Clytia hemisphaericaexon
TCONS_00009235-exon-sc0000091-1575043694:55670..55805TCONS_00009235-exon-sc0000091-1575043694:55670..55805Clytia hemisphaericaexon
TCONS_00009235-exon-sc0000091-1575043694:55169..55435TCONS_00009235-exon-sc0000091-1575043694:55169..55435Clytia hemisphaericaexon
TCONS_00009235-exon-sc0000091-1575043694:54398..55058TCONS_00009235-exon-sc0000091-1575043694:54398..55058Clytia hemisphaericaexon
TCONS_00009235-exon-sc0000091-1510915933:62485..62633TCONS_00009235-exon-sc0000091-1510915933:62485..62633Clytia hemisphaericaexon
TCONS_00009235-exon-sc0000091-1510915933:62243..62402TCONS_00009235-exon-sc0000091-1510915933:62243..62402Clytia hemisphaericaexon
TCONS_00009235-exon-sc0000091-1510915933:61900..62012TCONS_00009235-exon-sc0000091-1510915933:61900..62012Clytia hemisphaericaexon
TCONS_00009235-exon-sc0000091-1510915933:61466..61521TCONS_00009235-exon-sc0000091-1510915933:61466..61521Clytia hemisphaericaexon
TCONS_00009235-exon-sc0000091-1510915933:56892..57006TCONS_00009235-exon-sc0000091-1510915933:56892..57006Clytia hemisphaericaexon
TCONS_00009235-exon-sc0000091-1510915933:56487..56723TCONS_00009235-exon-sc0000091-1510915933:56487..56723Clytia hemisphaericaexon
TCONS_00009235-exon-sc0000091-1510915933:55670..55805TCONS_00009235-exon-sc0000091-1510915933:55670..55805Clytia hemisphaericaexon
TCONS_00009235-exon-sc0000091-1510915933:55169..55435TCONS_00009235-exon-sc0000091-1510915933:55169..55435Clytia hemisphaericaexon
TCONS_00009235-exon-sc0000091-1510915933:54398..55058TCONS_00009235-exon-sc0000091-1510915933:54398..55058Clytia hemisphaericaexon
TCONS_00009235-exon-sc0000091-1491911889:62485..62633TCONS_00009235-exon-sc0000091-1491911889:62485..62633Clytia hemisphaericaexon
TCONS_00009235-exon-sc0000091-1491911889:62243..62402TCONS_00009235-exon-sc0000091-1491911889:62243..62402Clytia hemisphaericaexon
TCONS_00009235-exon-sc0000091-1491911889:61900..62012TCONS_00009235-exon-sc0000091-1491911889:61900..62012Clytia hemisphaericaexon
TCONS_00009235-exon-sc0000091-1491911889:61466..61521TCONS_00009235-exon-sc0000091-1491911889:61466..61521Clytia hemisphaericaexon
TCONS_00009235-exon-sc0000091-1491911889:56892..57006TCONS_00009235-exon-sc0000091-1491911889:56892..57006Clytia hemisphaericaexon
TCONS_00009235-exon-sc0000091-1491911889:56487..56723TCONS_00009235-exon-sc0000091-1491911889:56487..56723Clytia hemisphaericaexon
TCONS_00009235-exon-sc0000091-1491911889:55670..55805TCONS_00009235-exon-sc0000091-1491911889:55670..55805Clytia hemisphaericaexon
TCONS_00009235-exon-sc0000091-1491911889:55169..55435TCONS_00009235-exon-sc0000091-1491911889:55169..55435Clytia hemisphaericaexon
TCONS_00009235-exon-sc0000091-1491911889:54398..55058TCONS_00009235-exon-sc0000091-1491911889:54398..55058Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:54398..62633 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	1.41766	0	1.04917	1.01664	8.15588	6.35488	2.13047	2.49338	1.22715	0	6.55333	5.11488	0	0	0	0	0	0	0	0	0	0
Blast
[Close]
BLAST of TCONS_00009235 vs. Swiss-Prot (Human)
Match: ARSJ (Arylsulfatase J OS=Homo sapiens GN=ARSJ PE=2 SV=1)

HSP 1 Score: 383.645 bits (984), Expect = 5.395e-124
Identity = 211/510 (41.37%), Postives = 301/510 (59.02%), Query Frame = 3 
Query:  105 SEQPPNVVLIVADDLGWTDVSFHGCDQIKTPNIDKLAKEGIILNNYYVQPICTPTRSALMTGRYPIHTGMQHGVLLASEPWGLSLDEKTLPQYLKEMGYATHAIGKWHLGMFAKEYTPTYRGFDTFYGYYNGAEDYFYHNRSGYHFPQYSGVDLHHAVHEQMTHDWFQDGHYSGDLFTSKAIDIIQDHPTTDPLFLYLPFQNVHDPWDAPKEWVDKFSNKIEDEQRRTFAAMVGALDEAIGKIYEALDEKNMLDNSIIIFTSDNGGIPTDGHSSNFPLRGQKWNAYEGGVRVPAFINSPLLKRSGVTSMQMMHVTDWLPTIVNLAQGKITKEI--DGFDQWKTLQSDVESPRKEILLNIDDIFN------------------QEALIVGEWKILTDFVHRSTRKKDTIDHGYQDGWIKAPGHNSTGKATSPVNCGSKPEKVTHCI-ETHCLFNLQNDPCEYNDVSSQYPEIYQQMKNKLEDYKKGMVQSRKQPGDKMSDPQLNGGFWGPW 1571
            S   P+++ I+ADD G+ DV +HG  +IKTP +DKLA EG+ L NYYVQPICTP+RS  +TG+Y IHTG+QH ++  ++P  L LD  TLPQ LKE+GY+TH +GKWHLG + KE  PT RGFDTF+G   G+ DY+ H +     P   G DL+   +    +D   +G YS  ++T +   I+  H  T P+FLY+ +Q VH P  AP  + + + + I   +RR +AAM+  LDEAI  +  AL      +NSIII++SDNGG PT G  SN+PLRG K   +EGG+R   F++SPLLK  G    +++H+TDW PT+++LA+G+I ++I  DG+D W+T+   + SPR +IL NID I+                   Q A+ V  WK+LT             + GY D W+     ++ G            E++T    ++  LFN+  DP E  D+S++YP I +++  +L  + K  V  R  P D  S+P+LNGG WGPW
Sbjct:   72 STSQPHLIFILADDQGFRDVGYHG-SEIKTPTLDKLAAEGVKLENYYVQPICTPSRSQFITGKYQIHTGLQHSIIRPTQPNCLPLDNATLPQKLKEVGYSTHMVGKWHLGFYRKECMPTRRGFDTFFGSLLGSGDYYTHYKC--DSPGMCGYDLYENDNAAWDYD---NGIYSTQMYTQRVQQILASHNPTKPIFLYIAYQAVHSPLQAPGRYFEHYRSIININRRR-YAAMLSCLDEAINNVTLALKTYGFYNNSIIIYSSDNGGQPTAG-GSNWPLRGSKGTYWEGGIRAVGFVHSPLLKNKGTVCKELVHITDWYPTLISLAEGQIDEDIQLDGYDIWETISEGLRSPRVDILHNIDPIYTKAKNGSWAAGYGIWNTAIQSAIRVQHWKLLTG------------NPGYSD-WVPPQSFSNLGPNR------WHNERITLSTGKSVWLFNITADPYERVDLSNRYPGIVKKLLRRLSQFNKTAVPVRYPPKDPRSNPRLNGGVWGPW 554
The following BLAST results are available for this feature:
BLAST of TCONS_00009235 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARSJ5.395e-12441.37Arylsulfatase J OS=Homo sapiens GN=ARSJ PE=2 SV=1[more]
back to top