|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009229 ID=TCONS_00009229|Name=TCONS_00009229|organism=Clytia hemisphaerica|type=transcript|length=1800bpRun BLAST on NCBI transcript from alignment at sc0000091:44547..62633- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009229 ID=TCONS_00009229|Name=TCONS_00009229|organism=Clytia hemisphaerica|type=transcript|length=18087bp|location=Sequence derived from alignment at sc0000091:44547..62633- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00009229 vs. Swiss-Prot (Human)
Match: ARSJ (Arylsulfatase J OS=Homo sapiens GN=ARSJ PE=2 SV=1) HSP 1 Score: 382.104 bits (980), Expect = 6.908e-124 Identity = 210/510 (41.18%), Postives = 302/510 (59.22%), Query Frame = 3
Query: 105 SEQPPNVVLIVADDLGWTDVSFHGCDQIKTPNIDKLAKEGIILNNYYVQPICTPTRSALMTGRYPIHTGMQHGVLLASEPWGLSLDEKTLPQYLKEMGYATHAIGKWHLGMFAKEYTPTYRGFDTFYGYYNGAEDYFYHNRSGYHFPQYSGVDLHHAVHEQMTHDWFQDGHYSGDLFTSKAIDIIQDHPTTDPLFLYLPFQNVHDPWDAPKEWVDKFSNKIEDEQRRTFAAMVGALDEAIGKIYEALDEKNMLDNSIIIFTSDNGGIPTDGHSSNFPLRGQKWNAYEGGVRVPAFINSPLLKRSGVTSMQMMHVTDWLPTIVNLAQGKITKEI--DGFDQWKTLQSDVESPRKEILLNIDDIFN------------------QEALIVGEWKILTDFVHRSTRKKDTIDHGYQDGWIKAPGHNSTGKATSPVNCGSKPEKVTHCI-ETHCLFNLQSDPCEYNDVSSQYPEIYQQMKNKLENYKKGMVQSRKKPGDKTADPRLHGGVWMPW 1571
S P+++ I+ADD G+ DV +HG +IKTP +DKLA EG+ L NYYVQPICTP+RS +TG+Y IHTG+QH ++ ++P L LD TLPQ LKE+GY+TH +GKWHLG + KE PT RGFDTF+G G+ DY+ H + P G DL+ + +D +G YS ++T + I+ H T P+FLY+ +Q VH P AP + + + + I +RR +AAM+ LDEAI + AL +NSIII++SDNGG PT G SN+PLRG K +EGG+R F++SPLLK G +++H+TDW PT+++LA+G+I ++I DG+D W+T+ + SPR +IL NID I+ Q A+ V WK+LT + GY D W+ ++ G E++T ++ LFN+ +DP E D+S++YP I +++ +L + K V R P D ++PRL+GGVW PW
Sbjct: 72 STSQPHLIFILADDQGFRDVGYHG-SEIKTPTLDKLAAEGVKLENYYVQPICTPSRSQFITGKYQIHTGLQHSIIRPTQPNCLPLDNATLPQKLKEVGYSTHMVGKWHLGFYRKECMPTRRGFDTFFGSLLGSGDYYTHYKC--DSPGMCGYDLYENDNAAWDYD---NGIYSTQMYTQRVQQILASHNPTKPIFLYIAYQAVHSPLQAPGRYFEHYRSIININRRR-YAAMLSCLDEAINNVTLALKTYGFYNNSIIIYSSDNGGQPTAG-GSNWPLRGSKGTYWEGGIRAVGFVHSPLLKNKGTVCKELVHITDWYPTLISLAEGQIDEDIQLDGYDIWETISEGLRSPRVDILHNIDPIYTKAKNGSWAAGYGIWNTAIQSAIRVQHWKLLTG------------NPGYSD-WVPPQSFSNLGPNR------WHNERITLSTGKSVWLFNITADPYERVDLSNRYPGIVKKLLRRLSQFNKTAVPVRYPPKDPRSNPRLNGGVWGPW 554 The following BLAST results are available for this feature:
BLAST of TCONS_00009229 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.