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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009224 ID=TCONS_00009224|Name=TCONS_00009224|organism=Clytia hemisphaerica|type=transcript|length=618bp atTTGTAACAGGACCGATAACCTTACATTTTGTTGTATTTATTGGTAACA TCTAACATTGAATTTATATCTCATAGACAACTCTAAATAATACTAACATT GGCTAAATGGTTAAATGACAAAATGAAGGCAATCTTATGGCAAATTTTCT TGGTAGTTTCCCTCGTTGGTCAAACTTTGTGCGCAGAGAAACCAAACTTT GTTATCATCGTAGCTGACGATTTGGGCTGGAATGATGTCAGCTTCCATGG ATCCGATCAAATCCCAACACCGAATATCGATAAATTGGCAAAAGAAGgaa ttattttgaataattattaTGTTGCACCTATATGCTCACCATCTCGAAGC GCTATCATGACTGGAAGATACCCTATTCATACAGGTATGCAGGAAAGCAC AGTGTTTGCTTCAGATACATGGGGAGTTGGtttaaatgaaacatttttac caGAGATTCTCAAAGAACAGGGATATTCAACGCATGCTGTCGGCAAGtgG CATGTTGGTATGTTTGCGAAAGAATACACTCCAACATACAGAGGCTTTGA TTCGTTTTATGGCTACTACCTTGGGAAAGCTGATTATTGGGACCACTCCA ATAACGAGAAGTACTGGG Run BLAST on NCBI transcript from alignment at sc0000091:35957..43902- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009224 ID=TCONS_00009224|Name=TCONS_00009224|organism=Clytia hemisphaerica|type=transcript|length=7946bp|location=Sequence derived from alignment at sc0000091:35957..43902- (Clytia hemisphaerica) ATTTGTAACAGGACCGATAACCTTACATTTTGTTGTATTTATTGGTAACA
TCTAACATTGAATTTATATCTCATAGACAACTCTAAATAATACTAACATT
GGCTAAATGGTTAAATGACAAAATGAAGGCAATCTTATGGCAAATTTTCT
TGGTAGTTTCCCTCGTTGGTCAAACTTTGTGCGCAGAGAAACCAAACTTT
GTTATCATCGTAGCTGACGATTTGGTAAGTACTCTAACAAACTCATAACA
CTTTCTGAATCCTCGATATAGGATGGCAATCGATCCAGGGAGGTGGGATA
CCCAGGTATTTGCGGATCTTCAAATCTTGAAAAATCCTGTTGTATTTTTT
CTAAAAAATAAGAATATCGAGTCCCTCAAAAGGGTAATCGGTTCTCGCAA
AAATCTCACTGAGATACAACCTACCTGGACATAAATTGAACATTTGAATA
AATTTATTTGATTGAAAAATTCAATTAGATTTATTTATTTTGGCCCTCAT
TCATGTCTGCTTTTCCACCAAAGGGCTGGAATGATGTCAGCTTCCATGGA
TCCGATCAAATCCCAACACCGAATATCGATAAATTGGCAAAAGAAGGAAT
TATTTTGAATAATTATTATGTTGCACCTATATGCTCACCATCTCGAAGCG
CTATCATGACTGGAAGATACCCTATTCATACAGGTTATCATTTTTTTTGT
TCTAACCAAATGACTCTGGTAGTGGAAACAACTGTTACTACAGAGAGTTT
ACTGCTAAGCTTTTGGGTTTTAATGTTTACTATTCTATTTGTCATTTCAG
GTATGCAGGAAAGCACAGTGTTTGCTTCAGATACATGGGGAGTTGGTTTA
AATGAAACATTTTTACCAGAGATTCTCAAAGAACAGGGATATTCAACGCA
TGCTGTCGGCAAGGTATGTTTGTATATAATTTAATGATGTGAGATGCTGT
GCAATCTTATGAAGTGCTTGTGAGTCCCAATAAGAGCGAAATGCATACAC
CTGCTCTGAAAGAAAATAGTTGGACAGTTATATATATTAATTTCATTCAC
TTTGAAACTTGTTTTTACTTTGGTTTTAGTACAAGTAGTGCTCTATGAAT
TGCTTTCTCTGATTCGGTTTGCTCAAGTCAATACTTAGACCAAGGACACT
TGTATAGCGTATACAAGTGTCCTTGCTTAGACTCAAAGTAAGCCGAATTT
GACCTTTCTGAAAAACGAGGACACTTCATCTCAATGAATGAAATAAATGT
AAAATATTTTTTTATAGTGGCATGTTGGTATGTTTGCGAAAGAATACACT
CCAACATACAGAGGCTTTGATTCGTTTTATGGTTACTACCTTGGGAAAGC
TGATTATTGGGACCACTCCAATAATGAGAAGTACTGGGGACTCGATCTGC
ATGATAATTTTGAGGTCAGTGTTCTTTATTATATACTCAACTGCTCCCCT
CTGATATTGATAACGATGTTGTGAAATTCTTGTTGACATATTTTTACTTG
AGCATTATCATTTTTTATAATCTAGGGTGTTACCGGATTTGTGGGTTGTC
TGACTGAAAGTTTTTTGATTTCTTTCATAATTTCCAAAGACAGTCTATGA
GGAACTGATTTCTTCGTTTCCGTGTACTTGTGACTCTTTTAAGGATGAGC
AAAGTAGAAAAGCCAGTGACCTATCTTGTATGCCTTTTTATTTGTCTATG
TGCTCCTGAGCTCAGCCCTGGATAATTCAAATCCCTAAAAGTGATCTCTA
TTTGTTCTTACCAACATCATTATCTTGTATCTTTAATAAATTTAGATGGT
ACAAACATCAGCCTTTCTTTGTTTATACTTCTAATTTTTCGTCATTTTAG
CCGGTATACACACAATGGGGTAACTACAGTACGGAGATGTACACAGCTGA
AGCAGAAGGTCGTATACACAATCATGACCAATCGAAACCACTCTTCTTAT
ACCTCGCATATCAAGCGGTTCACAGTGCTAATAGGGACGCAGATGCACTG
CAAGCCCCCGATTCATGGATACGAAAGTATAATTACATTCAGCACGAAGG
ACGTAGAAAATTTGCAGCTATGATGGGTTANCTAAAAGAGCACTCCTTCC
GCCCGCGCGACTTGCAAAAACCTCTCCTCATTGAGGAGAGGTTTTTTATA
CTTGATACTTGCTGTTAAAAGTCAAGGGATGATAAAGATCCTTTCTGTCA
CCGTTCAAACTAATTTTTTTCCATTTAACAGCAAAATAAACATTTAAAAC
CGAAGAACCACTGCTTAGATTGCTTANCAATGCTTATATTATGCTGAATT
TTACTGCCATCTAAATTTCCTTGCTATTTAGCAACTCAACCATACTTCCG
AACAAAACAATATTTACCATAAATTTACTCATGTACCTGACCAATATATA
GCTTATTACAGAGTGAAACCCACTGACCTTTATATATCCATGGACCAAGC
TATATCCGCCATCTTTGATTGGTTTTTTTTTGGAATTGGTTCCCGAGAAG
AAGCCATTGCAATGTTAAAAATTAACGTCTAACGGCGCTACATCATCAAA
AGTATTCGAGAACTAGCCGTATTGTATAAGGGTNCGCAATTTGATCAACT
TCAGATTCTAAGTCCGTGTTTCGGCTTGCGGTAACTTTATTGCTGTTCAC
TGCTAGGGTACACCATTTTAAAACGGCTTCTTTCGCAGTCCTAGCTACCA
AACCGAGAAAGTTTTCGTGGCTTCAAGCCAAACCATTCAAGGTCATTTTG
ATAAAATCATCGGTTTGAAGATGTGATTTATATAGCAAATTTTATAGCAA
ATTTTCGCTTGGGATAGAAGTTAAAGGTACGTGCACACAAATAGCAAAAC
TTCTTCGCTCATAAATTCGCTTTGCAAAAAGTAGATCTAGTGCTCTCGAT
GCACTCAAAACTACATATATGAGTAGTGCCGCCATTAGGATACCATTTTC
AAAAAAACTCCGATCNTTAGCAAAATAAGAGACACTCTAAAAATCCCTCT
AATAAAGCCGCTATGAGACAGGTTCGTAAGAGCCTTAATGCCCAAACACA
CCACATAATCCACGGCGGCACAACACCCGCCGCCACCCGCGCATCGCTCT
TTTTTTCATTCTAGTTATTCTAGTGTAAATGGTGCCTTAATAAAATCGAA
GGATATTCGTCGAACGATGATCGAACATTTTTATCCGAATCACGAATCGT
CTGTCGAAATCATCAAAACATAAAANTCAGTCCAAAGCTCAACCATTTAC
GCAAATTTTATATCGGCCAAACCTCTTAAAACAAAATTTCATGTTTTTTC
GTTGCCACAGGTCCACGATGCTCTGGTAAAGACAGGCATGATCAATAACA
CAGTCATCATTTTCACCACAGATAACGGAGGTCCTGCTAATGGTTTTGAC
GCAAACTGGGCCAATAATTTCCCTTTAAGAGGTGTCAAGGCTACGCTATG
GGAAGGTACGGCCCGAGCGCTATTCCAACTTCGTTTCAGCATCCATTTAA
CGTTTTAAGGGCGTTATAGGCGTTAGCTAGACGTTGTTTTGATATTTTCA
GACATCTTGGAGAAGGTCTTACCTGTTGCTGTATGATTCTTAAGTCGAAT
TCATAAGATCAAAAGCTCTCCTTTAAGCTACTCAACCACTTTCAAATTAC
TTGCAATTTCATCTATTGAATCTTGAACGAATAAACTATTTTTTAAGAAG
TCAGAAAACCAGCGAAATTTTACGGACCTTTGACTTTTTATTATTTTAAG
GAGGTGTGCGAGCGGCTGGATTTGTTCATAGTAACTTGTTAAAGAAGCCA
GGTCGAACATCCATGGACTTAATACACATTACCGATTGGGTTCCAACGCT
GGTCAATTTAGCAGGTGGATCTTCAAAAGCTCCCTTTGATGGTGTGGATC
AATGGCCTTGTTTATCTGAAGGTCTACCTTCTGCTAGAGAAGAGATTTTG
CTGAATATTGATCACCATGACTGGAAAAATAGAGCTTTACGAATGGGTGA
TTGGAAAATTATACAAGAAAGTATGATGGTTTTGATTTTTTTTCCATGCT
TTCTTTTGTACGCTAGCAATACAGCATCAGTTTTATTGAGTTGTAGATTA
AAAAAGGTAGTGTCCTTAGCGAAAAGAAAAGGTGGGATAAGATTATTGTT
TTCTATTCTTATTGATATTGTGTGTTTCGTTAGATACTAACTACAAAATA
TACAAGTGTCGCTGTATAATAACGTGGTCAATCAATTTTCCCCGACGGTC
AGATTCTTTTACTTTCAAGTATATTTTTGAATGTGAAAATATTTTTCTTC
TAAAAAGCTATTTTAATATACTGTAATCGATTTTAATCAATCATCAATGT
TGAAACAATTAATGTTTATTGTTCTTGCCTTTTAAAAATTAGATAAACAA
TATTATCTCCTTTATCTTTCCTTTTTAGCTGGTACATGGGACGGTTGGTA
TGCCCCGCCAGGGGTTATTGGTATGGAAAACAATATTCTGGTTGACGACC
CTTATATCACATTCCACAGTCAACTAGTGGTCAACTGTGGTGCTAAACCT
GCCAATGTTTCGAGCACGTGTTTTAAGAAACCCAATTTCTGTTTATTCAA
CATCATCGACGATCCTTGCGAATATCATGATTTGTCAGGCAAATATCCTG
AACTTCTGGAAACGATGAAGAAAAGATTACAATTTTATGAAGATAGTGCA
GTTCCACCAAGAAGAAATGAGACAGGGGACCCCAGAGCAAACCCAAAGCT
CCATAACGGTGTATGGGTACCTTGGATCACTCTACCTTAAAACCAAAGTC
AAGAAATTGATTCTTAAAAGGATTATTGTTATTCGTAAGGTTTGTAGGGT
CCTAGACCTAACACCTAGAGCCACTAAAAAACTGTGCTACATTTCGTCGT
CCATCGATGCATTTTTGAATTTAGACTTTAAAGGGAACGACGCATGGTAT
ATTTATGAAATGCTGATCTAGCATTGGCACAAACACCCATACGGAGGAGT
ATTTAGGAGTGCTGGATCATAACAANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAA
CGTCTTTGCAATCTTTTTGTTTACATTTTGTCTTCATTCACTTTCGTTTA
CTGTTGAAAACATAACAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNATTACTCCTTATAATTATGTGTAGTTTTTAGAGTTTATGTGT
AAAGAGTTTATTTAGAGTTTAATCGATTCACTTTCACTTCACTGTAGGAA
GGGTTGTCAAGAGCAAGGTGTTAGATTTTCAAAAGAACACACATTATGCT
CAAGAATCAACTTGTTGGTGACGTAATTGAAGTGTGTGTCATTCATTTTC
TCTTTAAATGTATATCTTTAAACTCTCCTCTCCTTTGGACGGTGGGAACC
TTTTTTGAAAATTTTGACTTCGCAATTCCTACTCTTACATATACCTAAAA
GATATATAATGATGACAAAAACAGACGATCTAATCCTTGGGTTGAACATT
TGGTGCATGATAGAACGGAGTAATAAAAAGTGCTATTGATTAATACTTTA
AAACTAACTTTTAGCCTGTAATAAGCCTGTATGATGGCGGAGTACTTTCT
CATATTTTAGAGATACAGACACACAAACTTTTCTACTCAATGACATGCTC
CTAAGCTCGACACACTGATTTTTTATACAAGATGACATCATCGATATGTA
TGCATACTTGATACTGCCAAAAATACAATTAAAATCTAACTGTCATAAGG
TTTTTCTAATCTCCCCATGTTATGATGTTGTCTTTAAATAATTTCTCACC
GTTTTTGACAATTTTTCAGTTTTATTTCATATATGTCATTTTGATACGCA
TTTCAAATTTTTAGATAAATACAATGTGAGTGCGATGTAACTTAGTGAGA
AAACATTTTAATTATAAAGTCTTGTAACAACTTTCTGTCATATGATCTTG
ATCTTTTTGAGCAAGTTTTTTATTTTACGTTCATTGCTAACAATTTTTTT
CAGTTTCAACCTTGTGAACTGTATAAATTTGTTGTAATATCTCCACACAT
AATATTGAGATTTATCTTAATAGACAACTCTTAACACAGGGTAAATAGTT
AAATGACAAAATGAAGGCAATTTTATGGCAATTTTTCTTGGTAGCTTCCC
TCGTTGGTCAAATTTTGTGCGCAGAGAAACCAAACTTTGTTATTATCGTA
GCTGACGACTTGGTAAGAACACGACAAATTGAACCATAGGTAAACCCAAA
AATCTAATAGAAGAAAGGGATGCTATAATCCTGAAGCAAAATCTTAAGAT
CTCAAATGTGCGAACCTTAAGATCTCCAAATTCTGTTGTAATTTTTTACA
AATTCATGAATCGTAGAAATTGAGTCCCTTAATTGAAAGGGGCGTTAATT
CAGGGGTTGGACAATCTCACCATTCTACAACAGACCTATGACCCTGGGCT
TAATAAAATTTGAAAAGCTTTGGTCAATGAGAAAATCCACCTAAACTAAT
TTGTGTTAGCCTTTTCTAATGTCTGCTTTTCCACCAAAGGGATGGAATGA
TGTCAGCTTCCACGGATCAGATCAAATCCCAACACCTAACATTGATAAAT
TGGCAAAAGAAGGAATTATTTTGAATAATTATTATGTTGCACCTATATGC
TCACCATCTCGGAGTGCCATCATGACTGGGAGATACCCTATTCATACAGG
TTGATTATTTTCTTATCAAGTTCATAGGATTTAATTTCAATAAAACACGA
AAATTTCTGTATCATTATTACAAGAAATACCAAGCAAGGTTTTCAAGCTT
GCTAACGTTTAAATTTCAAGTCAGTACTCTCAAACTGACCAGCGCCAGTT
GCAAAAGCCATTGACAAATAAGAAAGAATGAAATGTTTTGAGGGGGTTGG
ATATGGTCTAATTATAGTATTTCTACTTTTGATGTTCAGGTATGCAAGTA
AGCACAATATTTGCATATGACACATGGGGTGTCAGTTTAAATGAAACATT
CTTACCAGAGATTCTCAAAGAACAGGGATATGCAACGCATGCTATCGGCA
AGGTATGTCGTGTATTAACATTCGGAGATTTTTTCATCCTGTGAGAGATG
CTTTTTTTTCTTTGTTTGACTTATTAGTATTGCACGCGTTCTATGATTCG
AGAAGCAATGTTCACAATCTTTTAGAGAGTCAAAGTTGGATCTTCTTGAG
AAATGAATGCACTCTACCCCAAGAATGAAATATATAATCCATAAAATCCA
AACTTTCCGTCATTTTATTTCTTAGTGGCATGTTGGTATGTTTGCGAAAG
AATACACTCCAACATACAGAGGCTTTGATTCGTTTTATGGCTACTACCTT
GGGAAAGCTGATTATTGGGACCACTCCAATAACGAGAAGTACTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00009224-exon-sc0000091-1575043694:43679..43902 | TCONS_00009224-exon-sc0000091-1575043694:43679..43902 | Clytia hemisphaerica | exon |
TCONS_00009224-exon-sc0000091-1575043694:43220..43379 | TCONS_00009224-exon-sc0000091-1575043694:43220..43379 | Clytia hemisphaerica | exon |
TCONS_00009224-exon-sc0000091-1575043694:42990..43102 | TCONS_00009224-exon-sc0000091-1575043694:42990..43102 | Clytia hemisphaerica | exon |
TCONS_00009224-exon-sc0000091-1575043694:42590..42635 | TCONS_00009224-exon-sc0000091-1575043694:42590..42635 | Clytia hemisphaerica | exon |
TCONS_00009224-exon-sc0000091-1575043694:35957..36031 | TCONS_00009224-exon-sc0000091-1575043694:35957..36031 | Clytia hemisphaerica | exon |
TCONS_00009224-exon-sc0000091-1510915933:43679..43902 | TCONS_00009224-exon-sc0000091-1510915933:43679..43902 | Clytia hemisphaerica | exon |
TCONS_00009224-exon-sc0000091-1510915933:43220..43379 | TCONS_00009224-exon-sc0000091-1510915933:43220..43379 | Clytia hemisphaerica | exon |
TCONS_00009224-exon-sc0000091-1510915933:42990..43102 | TCONS_00009224-exon-sc0000091-1510915933:42990..43102 | Clytia hemisphaerica | exon |
TCONS_00009224-exon-sc0000091-1510915933:42590..42635 | TCONS_00009224-exon-sc0000091-1510915933:42590..42635 | Clytia hemisphaerica | exon |
TCONS_00009224-exon-sc0000091-1510915933:35957..36031 | TCONS_00009224-exon-sc0000091-1510915933:35957..36031 | Clytia hemisphaerica | exon |
TCONS_00009224-exon-sc0000091-1491911889:43679..43902 | TCONS_00009224-exon-sc0000091-1491911889:43679..43902 | Clytia hemisphaerica | exon |
TCONS_00009224-exon-sc0000091-1491911889:43220..43379 | TCONS_00009224-exon-sc0000091-1491911889:43220..43379 | Clytia hemisphaerica | exon |
TCONS_00009224-exon-sc0000091-1491911889:42990..43102 | TCONS_00009224-exon-sc0000091-1491911889:42990..43102 | Clytia hemisphaerica | exon |
TCONS_00009224-exon-sc0000091-1491911889:42590..42635 | TCONS_00009224-exon-sc0000091-1491911889:42590..42635 | Clytia hemisphaerica | exon |
TCONS_00009224-exon-sc0000091-1491911889:35957..36031 | TCONS_00009224-exon-sc0000091-1491911889:35957..36031 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000091 | supercontig | sc0000091:35957..43902 - |
Blast
BLAST of TCONS_00009224 vs. Swiss-Prot (Human)
Match: ARSB (Arylsulfatase B OS=Homo sapiens GN=ARSB PE=1 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 8.743e-49 Identity = 74/141 (52.48%), Postives = 101/141 (71.63%), Query Frame = 3
Query: 180 CAEKPNFVIIVADDLGWNDVSFHGSDQIPTPNIDKLAKEGIILNNYYVAPICSPSRSAIMTGRYPIHTGMQESTVFASDTWGVGLNETFLPEILKEQGYSTHAVGKWHVGMFAKEYTPTYRGFDSFYGYYLGKADYWDHSN 602
+ P+ V ++ADDLGWNDV FHGS +I TP++D LA G++L+NYY P+C+PSRS ++TGRY I TG+Q ++ V L+E LP++LKE GY+TH VGKWH+GM+ KE PT RGFD+++GY LG DY+ H
Sbjct: 41 ASRPPHLVFLLADDLGWNDVGFHGS-RIRTPHLDALAAGGVLLDNYYTQPLCTPSRSQLLTGRYQIRTGLQHQIIWPCQPSCVPLDEKLLPQLLKEAGYTTHMVGKWHLGMYRKECLPTRRGFDTYFGYLLGSEDYYSHER 180
The following BLAST results are available for this feature:
|