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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009222 ID=TCONS_00009222|Name=TCONS_00009222|organism=Clytia hemisphaerica|type=transcript|length=419bp
ACAGGTCCACGATGCTCTGGTAAAGACAGGCATGATCAATAACACAGTCA
TCATTTTCACCACAGATAACGGAGGTCCTGCTAATGGTTTTGACCAAAAC
TGGGCAAATAATTTCCCTTTAAGAGGTGTCAAGGCTACACTATGGGAAGG
AGGTGTGCGAGCGGCTGGATTTGTGCATAGCAATTTGTTAAAGAAGCCAG
GCCGAACATCCATGGACTTAATACACATTACCGATTGGGTTCCAACGCTG
GTCAATTTAGcaggtggatcttcaaaagctCCCTTTGATGGTGTGGATCA
ATGGTCCTGTTTATCTGAAGGTCTACCTTCTGCAAGAGAAgagattttgt
tgaatattgATAACGATCGATGGATGAATAAAGCTCTGCGAATGGGAGAT
TGGAAAATTATACAAGAAA Run BLAST on NCBI transcript from alignment at sc0000091:33916..40596- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009222 ID=TCONS_00009222|Name=TCONS_00009222|organism=Clytia hemisphaerica|type=transcript|length=6681bp|location=Sequence derived from alignment at sc0000091:33916..40596- (Clytia hemisphaerica)
ACAGGTCCACGATGCTCTGGTAAAGACAGGCATGATCAATAACACAGTCA
TCATTTTCACCACAGATAACGGAGGTCCTGCTAATGGTTTTGACGCAAAC
TGGGCCAATAATTTCCCTTTAAGAGGTGTCAAGGCTACGCTATGGGAAGG
TACGGCCCGAGCGCTATTCCAACTTCGTTTCAGCATCCATTTAACGTTTT
AAGGGCGTTATAGGCGTTAGCTAGACGTTGTTTTGATATTTTCAGACATC
TTGGAGAAGGTCTTACCTGTTGCTGTATGATTCTTAAGTCGAATTCATAA
GATCAAAAGCTCTCCTTTAAGCTACTCAACCACTTTCAAATTACTTGCAA
TTTCATCTATTGAATCTTGAACGAATAAACTATTTTTTAAGAAGTCAGAA
AACCAGCGAAATTTTACGGACCTTTGACTTTTTATTATTTTAAGGAGGTG
TGCGAGCGGCTGGATTTGTTCATAGTAACTTGTTAAAGAAGCCAGGTCGA
ACATCCATGGACTTAATACACATTACCGATTGGGTTCCAACGCTGGTCAA
TTTAGCAGGTGGATCTTCAAAAGCTCCCTTTGATGGTGTGGATCAATGGC
CTTGTTTATCTGAAGGTCTACCTTCTGCTAGAGAAGAGATTTTGCTGAAT
ATTGATCACCATGACTGGAAAAATAGAGCTTTACGAATGGGTGATTGGAA
AATTATACAAGAAAGTATGATGGTTTTGATTTTTTTTCCATGCTTTCTTT
TGTACGCTAGCAATACAGCATCAGTTTTATTGAGTTGTAGATTAAAAAAG
GTAGTGTCCTTAGCGAAAAGAAAAGGTGGGATAAGATTATTGTTTTCTAT
TCTTATTGATATTGTGTGTTTCGTTAGATACTAACTACAAAATATACAAG
TGTCGCTGTATAATAACGTGGTCAATCAATTTTCCCCGACGGTCAGATTC
TTTTACTTTCAAGTATATTTTTGAATGTGAAAATATTTTTCTTCTAAAAA
GCTATTTTAATATACTGTAATCGATTTTAATCAATCATCAATGTTGAAAC
AATTAATGTTTATTGTTCTTGCCTTTTAAAAATTAGATAAACAATATTAT
CTCCTTTATCTTTCCTTTTTAGCTGGTACATGGGACGGTTGGTATGCCCC
GCCAGGGGTTATTGGTATGGAAAACAATATTCTGGTTGACGACCCTTATA
TCACATTCCACAGTCAACTAGTGGTCAACTGTGGTGCTAAACCTGCCAAT
GTTTCGAGCACGTGTTTTAAGAAACCCAATTTCTGTTTATTCAACATCAT
CGACGATCCTTGCGAATATCATGATTTGTCAGGCAAATATCCTGAACTTC
TGGAAACGATGAAGAAAAGATTACAATTTTATGAAGATAGTGCAGTTCCA
CCAAGAAGAAATGAGACAGGGGACCCCAGAGCAAACCCAAAGCTCCATAA
CGGTGTATGGGTACCTTGGATCACTCTACCTTAAAACCAAAGTCAAGAAA
TTGATTCTTAAAAGGATTATTGTTATTCGTAAGGTTTGTAGGGTCCTAGA
CCTAACACCTAGAGCCACTAAAAAACTGTGCTACATTTCGTCGTCCATCG
ATGCATTTTTGAATTTAGACTTTAAAGGGAACGACGCATGGTATATTTAT
GAAATGCTGATCTAGCATTGGCACAAACACCCATACGGAGGAGTATTTAG
GAGTGCTGGATCATAACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAACGTCTT
TGCAATCTTTTTGTTTACATTTTGTCTTCATTCACTTTCGTTTACTGTTG
AAAACATAACAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNATTACTCCTTATAATTATGTGTAGTTTTTAGAGTTTATGTGTAAAGAG
TTTATTTAGAGTTTAATCGATTCACTTTCACTTCACTGTAGGAAGGGTTG
TCAAGAGCAAGGTGTTAGATTTTCAAAAGAACACACATTATGCTCAAGAA
TCAACTTGTTGGTGACGTAATTGAAGTGTGTGTCATTCATTTTCTCTTTA
AATGTATATCTTTAAACTCTCCTCTCCTTTGGACGGTGGGAACCTTTTTT
GAAAATTTTGACTTCGCAATTCCTACTCTTACATATACCTAAAAGATATA
TAATGATGACAAAAACAGACGATCTAATCCTTGGGTTGAACATTTGGTGC
ATGATAGAACGGAGTAATAAAAAGTGCTATTGATTAATACTTTAAAACTA
ACTTTTAGCCTGTAATAAGCCTGTATGATGGCGGAGTACTTTCTCATATT
TTAGAGATACAGACACACAAACTTTTCTACTCAATGACATGCTCCTAAGC
TCGACACACTGATTTTTTATACAAGATGACATCATCGATATGTATGCATA
CTTGATACTGCCAAAAATACAATTAAAATCTAACTGTCATAAGGTTTTTC
TAATCTCCCCATGTTATGATGTTGTCTTTAAATAATTTCTCACCGTTTTT
GACAATTTTTCAGTTTTATTTCATATATGTCATTTTGATACGCATTTCAA
ATTTTTAGATAAATACAATGTGAGTGCGATGTAACTTAGTGAGAAAACAT
TTTAATTATAAAGTCTTGTAACAACTTTCTGTCATATGATCTTGATCTTT
TTGAGCAAGTTTTTTATTTTACGTTCATTGCTAACAATTTTTTTCAGTTT
CAACCTTGTGAACTGTATAAATTTGTTGTAATATCTCCACACATAATATT
GAGATTTATCTTAATAGACAACTCTTAACACAGGGTAAATAGTTAAATGA
CAAAATGAAGGCAATTTTATGGCAATTTTTCTTGGTAGCTTCCCTCGTTG
GTCAAATTTTGTGCGCAGAGAAACCAAACTTTGTTATTATCGTAGCTGAC
GACTTGGTAAGAACACGACAAATTGAACCATAGGTAAACCCAAAAATCTA
ATAGAAGAAAGGGATGCTATAATCCTGAAGCAAAATCTTAAGATCTCAAA
TGTGCGAACCTTAAGATCTCCAAATTCTGTTGTAATTTTTTACAAATTCA
TGAATCGTAGAAATTGAGTCCCTTAATTGAAAGGGGCGTTAATTCAGGGG
TTGGACAATCTCACCATTCTACAACAGACCTATGACCCTGGGCTTAATAA
AATTTGAAAAGCTTTGGTCAATGAGAAAATCCACCTAAACTAATTTGTGT
TAGCCTTTTCTAATGTCTGCTTTTCCACCAAAGGGATGGAATGATGTCAG
CTTCCACGGATCAGATCAAATCCCAACACCTAACATTGATAAATTGGCAA
AAGAAGGAATTATTTTGAATAATTATTATGTTGCACCTATATGCTCACCA
TCTCGGAGTGCCATCATGACTGGGAGATACCCTATTCATACAGGTTGATT
ATTTTCTTATCAAGTTCATAGGATTTAATTTCAATAAAACACGAAAATTT
CTGTATCATTATTACAAGAAATACCAAGCAAGGTTTTCAAGCTTGCTAAC
GTTTAAATTTCAAGTCAGTACTCTCAAACTGACCAGCGCCAGTTGCAAAA
GCCATTGACAAATAAGAAAGAATGAAATGTTTTGAGGGGGTTGGATATGG
TCTAATTATAGTATTTCTACTTTTGATGTTCAGGTATGCAAGTAAGCACA
ATATTTGCATATGACACATGGGGTGTCAGTTTAAATGAAACATTCTTACC
AGAGATTCTCAAAGAACAGGGATATGCAACGCATGCTATCGGCAAGGTAT
GTCGTGTATTAACATTCGGAGATTTTTTCATCCTGTGAGAGATGCTTTTT
TTTCTTTGTTTGACTTATTAGTATTGCACGCGTTCTATGATTCGAGAAGC
AATGTTCACAATCTTTTAGAGAGTCAAAGTTGGATCTTCTTGAGAAATGA
ATGCACTCTACCCCAAGAATGAAATATATAATCCATAAAATCCAAACTTT
CCGTCATTTTATTTCTTAGTGGCATGTTGGTATGTTTGCGAAAGAATACA
CTCCAACATACAGAGGCTTTGATTCGTTTTATGGCTACTACCTTGGGAAA
GCTGATTATTGGGACCACTCCAATAACGAGAAGTACTGGGGGCTCGATCT
ACATGACAATTTAGAGGTCAGTGGTCCTGATGTTATTGCCCACTACTCCC
TTTTGAAATCAAAATTGGTGTCATGAGCTTCGTCAATATTGTTTGTTTTA
TGTTCCAGTTGATTCCAACTTCACCTGAGACCTTCAAACAAGGTAGAAAA
GATACTATGAACAATGACACTCATCGAGAAGCTCTAAGGGCTATAAGCTC
AAAGCTAAGAAATAATTAAGGTTAGGGGGAGGGGCCAATTCTGTTATTAC
CGCAATACTGTCTTCCCTGAGTTTTACTGGAGCGTCCGAAGATATCACCA
GTATCAGTACTTTCCTGCTATTAATAACTTTCTGATTTTTTTGTCATTTT
AGCCTGTATGGACACAATGGGGTAACTACAGTACGGAGATGTATACAGCA
GAAGCAGAAGGTCGTATACACAATCATGACCAATCGAAACCACTTTTCTT
ATACCTCGCATATCAAGCGGTTCACAGTGCTAATAGGGATGCAGATGCAC
TGCAAGCCCCCGATTCATGGATACGAAAGTACAATCACATTCAGCACGAA
GGACGTAGAAAATTTGCAGCCATGATGGGTTATATGGATTATGGCATTGG
AAGGGTAGGAAGCAAAAACGTTTGTAACATTTGGTCGACTAACCACCATA
TGAATTCTGGGAATTAAAAAACAAAAGACTAATGCCACTCTACTGTCAGC
TACATTTCTAGCCAAACGTTGTAAAAAGAAAGTAATTATTTTCTTTGAAG
TTCAAACCTTTCGATACAAAACTTCGAAGCATTGACTTACTTTCTTGTAA
CCGCAGGTCCACGATGCTCTTGTAAAGACAGGCATGATCAACAATACAGT
CATCATTTTCACCACAGATAACGGAGGTCCTGCTAATGGTTTTGACCAAA
ACTGGGCAAATAATTTCCCTTTAAGAGGTGTCAAGGCTACACTATGGGAA
GGTACGGCCCCTGCAAATGTTCATTAGACTTCTCTCTTTAATACCCATAA
AGGGTGTAAAAAGATTCTTGAAAATGCCCCCCCCCCCCGGGAAAAGGCGA
AAATCTGTGAGATACCCTTGCAAAATTTATCTTCTTGATATCATTAAAGT
GAGGGTAGAGGAACTAAAATCAGTTTTTCACCCCTGGAATTTTCGGAATA
ACGTTAACCCTTTAGAAATACGAATAAGCTTTCGGGGGGGGGGGGGGCAT
TTTAAAAAAGCTTTTTCCCCCCTTTTTTTTTAAAAAACCCCCCCCCCCCC
TGGAAAATGTCAAAATTTGAAAAAATCACTTTCAAAATTTTTTTTTTTTT
TTAAAAAACCCCCCCCCCCCCTGGAAAATGTCAAAATCTGTGAGATACCC
TTGCAAAATTTATCTTCTTGATATCATTAAAGTGAGGGTAGAGGAACTAA
AATCAGTTTTTCACCCCTGGAATTTTCGGAATAACGTTAACCCTTTAGAA
ATACGAATAAGCTTTCATTCGACCGCCTGGACATTTTTCTTACATTACCC
GCTGGAAACGATCCTCCAATGGAATGCTATTTCGGCGTCCACCTAACGGT
TTATAGATGTCATTTAGTTGATACTGCATGATTTCATAGTCGAATTTAAA
AGCTCAAAATTATTCTTTTTGGCTTTATCAACTTTAACATTTATATTGAT
GTTTTTTCTTTAAAAGACTTTTTCAGAAAGTCAAAAAACCGGTGCATAAA
TTTATGTTGATCCCTTGGATGTTGAAACTGAAGGTCCTTACTCTCTTTCA
CAATCTTCTAGGAGGTGTGCGAGCGGCTGGATTTGTGCATAGCAATTTGT
TAAAGAAGCCAGGCCGAACATCCATGGACTTAATACACATTACCGATTGG
GTTCCAACGCTGGTCAATTTAGCAGGTGGATCTTCAAAAGCTCCCTTTGA
TGGTGTGGATCAATGGTCCTGTTTATCTGAAGGTCTACCTTCTGCAAGAG
AAGAGATTTTGTTGAATATTGATAACGATCGATGGATGAATAAAGCTCTG
CGAATGGGAGATTGGAAAATTATACAAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009222-exon-sc0000091-1575043694:40523..40596 | TCONS_00009222-exon-sc0000091-1575043694:40523..40596 | Clytia hemisphaerica | exon |
| TCONS_00009222-exon-sc0000091-1575043694:34996..35070 | TCONS_00009222-exon-sc0000091-1575043694:34996..35070 | Clytia hemisphaerica | exon |
| TCONS_00009222-exon-sc0000091-1575043694:33916..34185 | TCONS_00009222-exon-sc0000091-1575043694:33916..34185 | Clytia hemisphaerica | exon |
| TCONS_00009222-exon-sc0000091-1510915933:40523..40596 | TCONS_00009222-exon-sc0000091-1510915933:40523..40596 | Clytia hemisphaerica | exon |
| TCONS_00009222-exon-sc0000091-1510915933:34996..35070 | TCONS_00009222-exon-sc0000091-1510915933:34996..35070 | Clytia hemisphaerica | exon |
| TCONS_00009222-exon-sc0000091-1510915933:33916..34185 | TCONS_00009222-exon-sc0000091-1510915933:33916..34185 | Clytia hemisphaerica | exon |
| TCONS_00009222-exon-sc0000091-1491911889:40523..40596 | TCONS_00009222-exon-sc0000091-1491911889:40523..40596 | Clytia hemisphaerica | exon |
| TCONS_00009222-exon-sc0000091-1491911889:34996..35070 | TCONS_00009222-exon-sc0000091-1491911889:34996..35070 | Clytia hemisphaerica | exon |
| TCONS_00009222-exon-sc0000091-1491911889:33916..34185 | TCONS_00009222-exon-sc0000091-1491911889:33916..34185 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000091 | supercontig | sc0000091:33916..40596 - |
Blast
BLAST of TCONS_00009222 vs. Swiss-Prot (Human)
Match: ARSI (Arylsulfatase I OS=Homo sapiens GN=ARSI PE=1 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.489e-35 Identity = 73/152 (48.03%), Postives = 89/152 (58.55%), Query Frame = 2
Query: 14 ALVKTGMINNTVIIFTTDNGGPANGFDQNWANNFPLRGVKATLWEGGVRAAGFVHSNLLKKPGRTSMDLIHITDWVPTLVNLAGGSSKAP--FDGVDQWSCLSEGLPSAREEILLNIDN-----------------DRWMNKALRMGDWKII 412
AL + G NN+VIIF++DNGG NW PLRG K T WEGGVR GFVHS LLK+ RTS L+HITDW PTLV LAGG++ A DG D W +SEG S R EIL NID + + A+R+G+WK++
Sbjct: 280 ALKRYGFYNNSVIIFSSDNGGQTFSGGSNW----PLRGRKGTYWEGGVRGLGFVHSPLLKRKQRTSRALMHITDWYPTLVGLAGGTTSAADGLDGYDVWPAISEGRASPRTEILHNIDPLYNHAQHGSLEGGFGIWNTAVQAAIRVGEWKLL 427
The following BLAST results are available for this feature:
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