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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009220 ID=TCONS_00009220|Name=TCONS_00009220|organism=Clytia hemisphaerica|type=transcript|length=1998bpRun BLAST on NCBI transcript from alignment at sc0000091:32902..43905- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009220 ID=TCONS_00009220|Name=TCONS_00009220|organism=Clytia hemisphaerica|type=transcript|length=11004bp|location=Sequence derived from alignment at sc0000091:32902..43905- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00009220 vs. Swiss-Prot (Human)
Match: ARSB (Arylsulfatase B OS=Homo sapiens GN=ARSB PE=1 SV=1) HSP 1 Score: 375.17 bits (962), Expect = 3.167e-121 Identity = 222/532 (41.73%), Postives = 293/532 (55.08%), Query Frame = 3
Query: 183 CAEKPNFVIIVADDLGWNDVSFHGSDQIPTPNIDKLAKEGIILNNYYVAPICSPSRSAIMTGRYPIHTGMQESTVFASDTWGVGLNETFLPEILKEQGYSTHAVGKWHVGMFAKEYTPTYRGFDSFYGYYLGKADYWDHSN-------NEKYWGLDLHDNFEPVYTQWGN-YSTEMYTAEAEGRIHNHDQSKPLFLYLAYQAVHSANRDADALQAPDSWIRKYNHIQHEGRRKFAAMMGYMDYGIGRVHDALVKTGMINNTVIIFTTDNGGPANGFDQNWANNFPLRGVKATLWEGGVRAAGFVHSNLLKKPGRTSMDLIHITDWVPTLVNLAGGSSKA--PFDGVDQWSCLSEGLPSAREEILLNIDN----------------------------DRWMNKALRMGDWKIIQETGTWDGWYAPPGVIGMENTNLVDDTYITFQSQPVVNCGEKPANVSSTCFKKPNFCLFNIIDDPCEYHDLSGKYPELLETMKKRLQFYEDSAVPPRRNETGDPRANPKLHNGVWVPWI 1664
+ P+ V ++ADDLGWNDV FHGS +I TP++D LA G++L+NYY P+C+PSRS ++TGRY I TG+Q ++ V L+E LP++LKE GY+TH VGKWH+GM+ KE PT RGFD+++GY LG DY+ H N LD D E V T + N YST ++T A I NH KPLFLYLA Q+VH + LQ P+ +++ Y+ IQ + R +A M+ MD +G V AL +G+ NNTV IF+TDNGG NW PLRG K +LWEGGVR GFV S LLK+ G + +LIHI+DW+PTLV LA G + P DG D W +SEG PS R E+L NID + ++ A+R G+WK++ W+ PP SQ N E P++ T LF+I DP E HDLS +YP ++ + RLQFY +V P DPR +PK GVW PW+
Sbjct: 41 ASRPPHLVFLLADDLGWNDVGFHGS-RIRTPHLDALAAGGVLLDNYYTQPLCTPSRSQLLTGRYQIRTGLQHQIIWPCQPSCVPLDEKLLPQLLKEAGYTTHMVGKWHLGMYRKECLPTRRGFDTYFGYLLGSEDYYSHERCTLIDALNVTRCALDFRDG-EEVATGYKNMYSTNIFTKRAIALITNHPPEKPLFLYLALQSVH------EPLQVPEEYLKPYDFIQDKNRHHYAGMVSLMDEAVGNVTAALKSSGLWNNTVFIFSTDNGGQTLAGGNNW----PLRGRKWSLWEGGVRGVGFVASPLLKQKGVKNRELIHISDWLPTLVKLARGHTNGTKPLDGFDVWKTISEGSPSPRIELLHNIDPNFVDSSPCPRNSMAPAKDDSSLPEYSAFNTSVHAAIRHGNWKLLTGYPGCGYWFPPP-------------------SQ--YNVSEIPSSDPPT----KTLWLFDIDRDPEERHDLSREYPHIVTKLLSRLQFYHKHSV-PVYFPAQDPRCDPKA-TGVWGPWM 533 The following BLAST results are available for this feature:
BLAST of TCONS_00009220 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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