TCONS_00009212 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009212
Unique NameTCONS_00009212
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length931

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009212 ID=TCONS_00009212|Name=TCONS_00009212|organism=Clytia hemisphaerica|type=transcript|length=931bp
cAGAAATTCAAAAACTAAACATGGGCTTGGGTCAAACTTTTCGCTCTTGC
TTTCATTGCATTAGCAGCTgCAAGTGATTATCATTTGGAGTTCAATGAAA
AACAACAGAAATATGACGAACGAGTTCACATTGACAAACAAAATGGTATC
CTCATCTACAGAGTGCCAAAACACGCTGGAGTGGTTGCTGCTCACTATTT
GAAAGATTTCAATAagCAAATGACAGTCTTGAAGGTTTTCACAGAGAAAA
GATGCTACATTTCAAAGATGGGAAAAGATGAACCATCAATCGATGACATT
GAATTGGGAATGCAAAAAGCCAATGGAGTTTTTGATTCCAAGAAATATTG
GATTGAAACTGAAGACGTCATCACCCTTGGTCACGCAAACAAATTAAGCC
TTtcgtccgccattttgaatttctgtGGAAGTTTTGACATCTTGGACACT
GTGAAAAACAACCAACAAACACGGGAAGCACTCAAAATGAAAGCCGTTGC
CCAATACAAAAGTGGAAAAAGCAAACGATTACTCGTCGAAGATTACGTCT
ACTGCAAAAACGATCAATCAAAAATGAGCGCTGAAATGGccaaatgtaat
aaaaaattcGATCAACTTGAATTCAACTGCAGATTCGTCAGACTTGGCAC
TTGCATTTACACAGTCAAATGTCTCTTGACACAACAAGGATACAATTGCC
CTGGTACACATCAATACACTCATTTGAACTGCTGTACAATCAGATGTAAA
GCttagataaataaatttgaaatttatatcagctaaatgattgaaaaaat
acttcaaatGTATACAAAATCTTTCTATTGTTTGTAATTTAAAGTCCAAA
TTTCAATACCCAACTCATCTCCTAACAAAATCCTTAGACAATTGAATACC
CTATTTTTTAGCTATGAGTAACCTCAAAATA
Run BLAST on NCBI

transcript from alignment at sc0000091:545351..548441+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009212 ID=TCONS_00009212|Name=TCONS_00009212|organism=Clytia hemisphaerica|type=transcript|length=3091bp|location=Sequence derived from alignment at sc0000091:545351..548441+ (Clytia hemisphaerica)
cAGAAATTCAAAAACTAAACATGGTAAGAAGATATTTGTAGTCATACTCG
TTACATACAATAGTTTAATATTGCTGTTAGGTTTGTCTCTTCCTTATCTT
TTTCAGTACTATCCTTTTAAATTTTCTACATTTATAAACAATTCTTTTGG
CTGCCGGTGATTTTGATTGGGCCATAGGGGTCCTTTTTCACAATCTCGAA
AGTCCcccaaaggggtacaaaaatcattaaaaagcaaagctccaaaatta
cgaaaatcaaaaatcgactccctcaaagggtcatgcatttttttaatttg
gactaaaatttgaaagtttttgactgaaattttgtgGAAATAGTCTCTAA
GGGtgacaaaaacgtcaaaaaacggactaaattttcgaaatttagttTCC
CTTTTCATCTTGCAAACCCATTGCGTTTGAAGTTTACATATTGTGGCTTT
GAAAAATCACCTAAATTTCAGTTTTCCAAAATACTGAAGAGTTAACCTGT
AATATTAATCAATTACTTTTGTTCCGTTTCAGGCTTGGGTCAAACTTTTC
GCTCTTGCTTTCATTGCATTAGCAGCTGTAAGTAATTTATTAAAAGATTA
TCAAAAAGCTAATATTTTTCGGTATTTCCTCCATCCAAAATGGAAGGTTA
AATATTTTATCTGCCAATCAAAAGTCTTCACTGCTGTTTAGAACCATACC
CAAACCCTGCAAAAGAACATCTACTTGTAGAAGAACcatttaaggggggg
gggggggcaattcCGAGACTCTGCCAAGTTCTGTCACATCCACTCACTTT
GGTTGAAATCCTTGTTTCGGGGCAAGATGCGTTCTAGAGCTCAACATAAT
ATAGGacctataaatttaaatttggcggaaagTAGTTGTAAGCGACTTTG
GCGAAATCTTTTGataattcgccaaattcgccaaaatttcttcccttaag
gtatctcTGCACAAAAATATTAGatatcactttttttttgcaggCAAGTG
ATTATCATTTGGAGTTCAATGAAAAACAACAGAAATATGACGAACGAGTT
CACATTGACAAACAAAATGGTATCCTCATCTACAGAGTGCCAAAACACGC
TGGAGTGGTTGCTGCTCACTATTTGAAAGATTTCAATAaggtattttctt
tttgaattatagaGAAAGTCTCTAATTTGGGGACAAGGAGAGATATTTTC
TGATCGGTAAGGTCCTGATGAGAAAAGGCACATGCAGATCTATAAAAGGT
cagattttgaaagattttgtttttatttaaaatgaaGTTTAACAAAGAAC
taaatttttctttccaaaaaccaGTATGTCATAATATGGAACCTTAAAGt
atgtctcaaaagtatgtgagCAGTCTTTTTACCTTTTCTAAGCACCCATT
TATGCTATGTTCGAAACTTAtaaaccgttggaaagatatttctaaGGAGA
ATAATTCAAgggtaaaagatttttgaaaaatttgaaaattattaagaatg
atttggaaatatctttccaacggtgtataactttcTAACAAAGCATTGCt
gagaaaatgctaaaaaactaaagtgtccacatacttttgagacagacttt
agttgtAAGTAGTAGGTTTTTTCTGAAATGTGTGAACGATCTCTTTTATT
ATCTGACACTTTGATTACCCAGCGGTATACTCTTTATACTTTTTGTTGTA
GCAAATGACAGTCTTGAAGGTTTTCACAGAGAAAAGATGCTACATTTCAA
AGATGGGAAAAGATGAACCATCAATCGATGACATTGAATTGGGAATGCAA
AAAGTGAGTATAGAACGGGTATAAAACTAAATGAAACTATATGAGCACTT
CCAGAAAAATATTGtctgaaaatagaatatcactTTATCGTTTAAGGATA
AATTTACAGCGAAAAGCTGCTTTCGATTtaaattttcaaccttttcaCCG
CGAAATCACCCAAAAATCTAAGAGATCATAACAGCATTTTTCATCCTGTT
CGGAGTataacatccccttctcacagacccggtgggaacCTCTCCCACTG
GAATAATTAGCCAAAAAGTCTTCCCCAATGGAAATCTATGCCAGCTATAA
AAAACATGGGAGTATCAACCCCCATCGGTTACTTTcaccccactggctga
aaaaatcttaccgGGCTTGTAAGAAGACGGTTTTAGGAACCTTGATatct
attttttaaaaacatcgaGTGAAAATCCGTTTATTCCTTTTCCACTAACA
GGCCAATGGAGTTTTTGATTCCAAGAAATATTGGATTGAAACTGAAGACG
TCATCACCCTTGGTCACGCAAACAAATTAAGCCTTtcgtccgccattttg
aatttctgtGGAAGTTTTGACATCTTGGACACTGTGAAAAACAACCAACA
AACACGGGAAGCACTCAAAATGAAAGCCGTTGGTGAGTTGATTGGCTTTT
GAGGGGTCTGGTAATGAATATACaagaaaatgacgtcaaaatactttatt
ttaagaaaatgtcaatgcaatgacttcttagATTTGAGTGGTTTTGGAAC
ATGGTTTTAGATTTCTCGAAATTACCCTCTTCTCGAAGACAATCTTTACG
CTTTAGCCTGACTAGTTTTGAACTTTTCAACTTATTTAGCACGTCTAATT
TTCTTCCAGCCCAATACAAAAGTGGAAAAAGCAAACGATTACTCGTCGAA
GATTACGTCTACTGCAAAAACGATCAATCAAAAATGAGCGCTGAAATGGc
caaatgtaataaaaaattcGATCAACTTGAATTCAACTGCAGATTCGTCA
GACTTGGCACTTGCATTTACACAGTCAAATGTCTCTTGACACAACAAGGA
TACAATTGCCCTGGTACACATCAATACACTCATTTGAACTGCTGTACAAT
CAGATGTAAAGCttagataaataaatttgaaatttatatcagctaaatga
ttgaaaaaatacttcaaatGTATACAAAATCTTTCTATTGTTTGTAATTT
AAAGTCCAAATTTCAATACCCAACTCATCTCCTAACAAAATCCTTAGACA
ATTGAATACCCTATTTTTTAGCTATGAGTAACCTCAAAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005172XLOC_005172Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009212-exon-sc0000091-1491911889:545351..545373TCONS_00009212-exon-sc0000091-1491911889:545351..545373Clytia hemisphaericaexon
TCONS_00009212-exon-sc0000091-1510915933:545351..545373TCONS_00009212-exon-sc0000091-1510915933:545351..545373Clytia hemisphaericaexon
TCONS_00009212-exon-sc0000091-1575043694:545351..545373TCONS_00009212-exon-sc0000091-1575043694:545351..545373Clytia hemisphaericaexon
TCONS_00009212-exon-sc0000091-1491911889:545882..545927TCONS_00009212-exon-sc0000091-1491911889:545882..545927Clytia hemisphaericaexon
TCONS_00009212-exon-sc0000091-1510915933:545882..545927TCONS_00009212-exon-sc0000091-1510915933:545882..545927Clytia hemisphaericaexon
TCONS_00009212-exon-sc0000091-1575043694:545882..545927TCONS_00009212-exon-sc0000091-1575043694:545882..545927Clytia hemisphaericaexon
TCONS_00009212-exon-sc0000091-1491911889:546344..546490TCONS_00009212-exon-sc0000091-1491911889:546344..546490Clytia hemisphaericaexon
TCONS_00009212-exon-sc0000091-1510915933:546344..546490TCONS_00009212-exon-sc0000091-1510915933:546344..546490Clytia hemisphaericaexon
TCONS_00009212-exon-sc0000091-1575043694:546344..546490TCONS_00009212-exon-sc0000091-1575043694:546344..546490Clytia hemisphaericaexon
TCONS_00009212-exon-sc0000091-1491911889:547052..547153TCONS_00009212-exon-sc0000091-1491911889:547052..547153Clytia hemisphaericaexon
TCONS_00009212-exon-sc0000091-1510915933:547052..547153TCONS_00009212-exon-sc0000091-1510915933:547052..547153Clytia hemisphaericaexon
TCONS_00009212-exon-sc0000091-1575043694:547052..547153TCONS_00009212-exon-sc0000091-1575043694:547052..547153Clytia hemisphaericaexon
TCONS_00009212-exon-sc0000091-1491911889:547602..547782TCONS_00009212-exon-sc0000091-1491911889:547602..547782Clytia hemisphaericaexon
TCONS_00009212-exon-sc0000091-1510915933:547602..547782TCONS_00009212-exon-sc0000091-1510915933:547602..547782Clytia hemisphaericaexon
TCONS_00009212-exon-sc0000091-1575043694:547602..547782TCONS_00009212-exon-sc0000091-1575043694:547602..547782Clytia hemisphaericaexon
TCONS_00009212-exon-sc0000091-1491911889:548010..548441TCONS_00009212-exon-sc0000091-1491911889:548010..548441Clytia hemisphaericaexon
TCONS_00009212-exon-sc0000091-1510915933:548010..548441TCONS_00009212-exon-sc0000091-1510915933:548010..548441Clytia hemisphaericaexon
TCONS_00009212-exon-sc0000091-1575043694:548010..548441TCONS_00009212-exon-sc0000091-1575043694:548010..548441Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:545351..548441 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.52652	0.485493	0.556367	0.141557	0.132531	0	0.0631748	0.0591435	0.165631	0	0.0497835	0	52.2849	79.0816	206.732	270.165	25.8393	13.2528	261.519	212.934	31.4187	26.0221	31.0132	21.2067	203.94	235.705	2.47635	1.90753	105.485	124.439
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009212 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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