|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009212 ID=TCONS_00009212|Name=TCONS_00009212|organism=Clytia hemisphaerica|type=transcript|length=931bp cAGAAATTCAAAAACTAAACATGGGCTTGGGTCAAACTTTTCGCTCTTGC TTTCATTGCATTAGCAGCTgCAAGTGATTATCATTTGGAGTTCAATGAAA AACAACAGAAATATGACGAACGAGTTCACATTGACAAACAAAATGGTATC CTCATCTACAGAGTGCCAAAACACGCTGGAGTGGTTGCTGCTCACTATTT GAAAGATTTCAATAagCAAATGACAGTCTTGAAGGTTTTCACAGAGAAAA GATGCTACATTTCAAAGATGGGAAAAGATGAACCATCAATCGATGACATT GAATTGGGAATGCAAAAAGCCAATGGAGTTTTTGATTCCAAGAAATATTG GATTGAAACTGAAGACGTCATCACCCTTGGTCACGCAAACAAATTAAGCC TTtcgtccgccattttgaatttctgtGGAAGTTTTGACATCTTGGACACT GTGAAAAACAACCAACAAACACGGGAAGCACTCAAAATGAAAGCCGTTGC CCAATACAAAAGTGGAAAAAGCAAACGATTACTCGTCGAAGATTACGTCT ACTGCAAAAACGATCAATCAAAAATGAGCGCTGAAATGGccaaatgtaat aaaaaattcGATCAACTTGAATTCAACTGCAGATTCGTCAGACTTGGCAC TTGCATTTACACAGTCAAATGTCTCTTGACACAACAAGGATACAATTGCC CTGGTACACATCAATACACTCATTTGAACTGCTGTACAATCAGATGTAAA GCttagataaataaatttgaaatttatatcagctaaatgattgaaaaaat acttcaaatGTATACAAAATCTTTCTATTGTTTGTAATTTAAAGTCCAAA TTTCAATACCCAACTCATCTCCTAACAAAATCCTTAGACAATTGAATACC CTATTTTTTAGCTATGAGTAACCTCAAAATA Run BLAST on NCBI transcript from alignment at sc0000091:545351..548441+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009212 ID=TCONS_00009212|Name=TCONS_00009212|organism=Clytia hemisphaerica|type=transcript|length=3091bp|location=Sequence derived from alignment at sc0000091:545351..548441+ (Clytia hemisphaerica) cAGAAATTCAAAAACTAAACATGGTAAGAAGATATTTGTAGTCATACTCG
TTACATACAATAGTTTAATATTGCTGTTAGGTTTGTCTCTTCCTTATCTT
TTTCAGTACTATCCTTTTAAATTTTCTACATTTATAAACAATTCTTTTGG
CTGCCGGTGATTTTGATTGGGCCATAGGGGTCCTTTTTCACAATCTCGAA
AGTCCcccaaaggggtacaaaaatcattaaaaagcaaagctccaaaatta
cgaaaatcaaaaatcgactccctcaaagggtcatgcatttttttaatttg
gactaaaatttgaaagtttttgactgaaattttgtgGAAATAGTCTCTAA
GGGtgacaaaaacgtcaaaaaacggactaaattttcgaaatttagttTCC
CTTTTCATCTTGCAAACCCATTGCGTTTGAAGTTTACATATTGTGGCTTT
GAAAAATCACCTAAATTTCAGTTTTCCAAAATACTGAAGAGTTAACCTGT
AATATTAATCAATTACTTTTGTTCCGTTTCAGGCTTGGGTCAAACTTTTC
GCTCTTGCTTTCATTGCATTAGCAGCTGTAAGTAATTTATTAAAAGATTA
TCAAAAAGCTAATATTTTTCGGTATTTCCTCCATCCAAAATGGAAGGTTA
AATATTTTATCTGCCAATCAAAAGTCTTCACTGCTGTTTAGAACCATACC
CAAACCCTGCAAAAGAACATCTACTTGTAGAAGAACcatttaaggggggg
gggggggcaattcCGAGACTCTGCCAAGTTCTGTCACATCCACTCACTTT
GGTTGAAATCCTTGTTTCGGGGCAAGATGCGTTCTAGAGCTCAACATAAT
ATAGGacctataaatttaaatttggcggaaagTAGTTGTAAGCGACTTTG
GCGAAATCTTTTGataattcgccaaattcgccaaaatttcttcccttaag
gtatctcTGCACAAAAATATTAGatatcactttttttttgcaggCAAGTG
ATTATCATTTGGAGTTCAATGAAAAACAACAGAAATATGACGAACGAGTT
CACATTGACAAACAAAATGGTATCCTCATCTACAGAGTGCCAAAACACGC
TGGAGTGGTTGCTGCTCACTATTTGAAAGATTTCAATAaggtattttctt
tttgaattatagaGAAAGTCTCTAATTTGGGGACAAGGAGAGATATTTTC
TGATCGGTAAGGTCCTGATGAGAAAAGGCACATGCAGATCTATAAAAGGT
cagattttgaaagattttgtttttatttaaaatgaaGTTTAACAAAGAAC
taaatttttctttccaaaaaccaGTATGTCATAATATGGAACCTTAAAGt
atgtctcaaaagtatgtgagCAGTCTTTTTACCTTTTCTAAGCACCCATT
TATGCTATGTTCGAAACTTAtaaaccgttggaaagatatttctaaGGAGA
ATAATTCAAgggtaaaagatttttgaaaaatttgaaaattattaagaatg
atttggaaatatctttccaacggtgtataactttcTAACAAAGCATTGCt
gagaaaatgctaaaaaactaaagtgtccacatacttttgagacagacttt
agttgtAAGTAGTAGGTTTTTTCTGAAATGTGTGAACGATCTCTTTTATT
ATCTGACACTTTGATTACCCAGCGGTATACTCTTTATACTTTTTGTTGTA
GCAAATGACAGTCTTGAAGGTTTTCACAGAGAAAAGATGCTACATTTCAA
AGATGGGAAAAGATGAACCATCAATCGATGACATTGAATTGGGAATGCAA
AAAGTGAGTATAGAACGGGTATAAAACTAAATGAAACTATATGAGCACTT
CCAGAAAAATATTGtctgaaaatagaatatcactTTATCGTTTAAGGATA
AATTTACAGCGAAAAGCTGCTTTCGATTtaaattttcaaccttttcaCCG
CGAAATCACCCAAAAATCTAAGAGATCATAACAGCATTTTTCATCCTGTT
CGGAGTataacatccccttctcacagacccggtgggaacCTCTCCCACTG
GAATAATTAGCCAAAAAGTCTTCCCCAATGGAAATCTATGCCAGCTATAA
AAAACATGGGAGTATCAACCCCCATCGGTTACTTTcaccccactggctga
aaaaatcttaccgGGCTTGTAAGAAGACGGTTTTAGGAACCTTGATatct
attttttaaaaacatcgaGTGAAAATCCGTTTATTCCTTTTCCACTAACA
GGCCAATGGAGTTTTTGATTCCAAGAAATATTGGATTGAAACTGAAGACG
TCATCACCCTTGGTCACGCAAACAAATTAAGCCTTtcgtccgccattttg
aatttctgtGGAAGTTTTGACATCTTGGACACTGTGAAAAACAACCAACA
AACACGGGAAGCACTCAAAATGAAAGCCGTTGGTGAGTTGATTGGCTTTT
GAGGGGTCTGGTAATGAATATACaagaaaatgacgtcaaaatactttatt
ttaagaaaatgtcaatgcaatgacttcttagATTTGAGTGGTTTTGGAAC
ATGGTTTTAGATTTCTCGAAATTACCCTCTTCTCGAAGACAATCTTTACG
CTTTAGCCTGACTAGTTTTGAACTTTTCAACTTATTTAGCACGTCTAATT
TTCTTCCAGCCCAATACAAAAGTGGAAAAAGCAAACGATTACTCGTCGAA
GATTACGTCTACTGCAAAAACGATCAATCAAAAATGAGCGCTGAAATGGc
caaatgtaataaaaaattcGATCAACTTGAATTCAACTGCAGATTCGTCA
GACTTGGCACTTGCATTTACACAGTCAAATGTCTCTTGACACAACAAGGA
TACAATTGCCCTGGTACACATCAATACACTCATTTGAACTGCTGTACAAT
CAGATGTAAAGCttagataaataaatttgaaatttatatcagctaaatga
ttgaaaaaatacttcaaatGTATACAAAATCTTTCTATTGTTTGTAATTT
AAAGTCCAAATTTCAATACCCAACTCATCTCCTAACAAAATCCTTAGACA
ATTGAATACCCTATTTTTTAGCTATGAGTAACCTCAAAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00009212-exon-sc0000091-1491911889:545351..545373 | TCONS_00009212-exon-sc0000091-1491911889:545351..545373 | Clytia hemisphaerica | exon |
TCONS_00009212-exon-sc0000091-1510915933:545351..545373 | TCONS_00009212-exon-sc0000091-1510915933:545351..545373 | Clytia hemisphaerica | exon |
TCONS_00009212-exon-sc0000091-1575043694:545351..545373 | TCONS_00009212-exon-sc0000091-1575043694:545351..545373 | Clytia hemisphaerica | exon |
TCONS_00009212-exon-sc0000091-1491911889:545882..545927 | TCONS_00009212-exon-sc0000091-1491911889:545882..545927 | Clytia hemisphaerica | exon |
TCONS_00009212-exon-sc0000091-1510915933:545882..545927 | TCONS_00009212-exon-sc0000091-1510915933:545882..545927 | Clytia hemisphaerica | exon |
TCONS_00009212-exon-sc0000091-1575043694:545882..545927 | TCONS_00009212-exon-sc0000091-1575043694:545882..545927 | Clytia hemisphaerica | exon |
TCONS_00009212-exon-sc0000091-1491911889:546344..546490 | TCONS_00009212-exon-sc0000091-1491911889:546344..546490 | Clytia hemisphaerica | exon |
TCONS_00009212-exon-sc0000091-1510915933:546344..546490 | TCONS_00009212-exon-sc0000091-1510915933:546344..546490 | Clytia hemisphaerica | exon |
TCONS_00009212-exon-sc0000091-1575043694:546344..546490 | TCONS_00009212-exon-sc0000091-1575043694:546344..546490 | Clytia hemisphaerica | exon |
TCONS_00009212-exon-sc0000091-1491911889:547052..547153 | TCONS_00009212-exon-sc0000091-1491911889:547052..547153 | Clytia hemisphaerica | exon |
TCONS_00009212-exon-sc0000091-1510915933:547052..547153 | TCONS_00009212-exon-sc0000091-1510915933:547052..547153 | Clytia hemisphaerica | exon |
TCONS_00009212-exon-sc0000091-1575043694:547052..547153 | TCONS_00009212-exon-sc0000091-1575043694:547052..547153 | Clytia hemisphaerica | exon |
TCONS_00009212-exon-sc0000091-1491911889:547602..547782 | TCONS_00009212-exon-sc0000091-1491911889:547602..547782 | Clytia hemisphaerica | exon |
TCONS_00009212-exon-sc0000091-1510915933:547602..547782 | TCONS_00009212-exon-sc0000091-1510915933:547602..547782 | Clytia hemisphaerica | exon |
TCONS_00009212-exon-sc0000091-1575043694:547602..547782 | TCONS_00009212-exon-sc0000091-1575043694:547602..547782 | Clytia hemisphaerica | exon |
TCONS_00009212-exon-sc0000091-1491911889:548010..548441 | TCONS_00009212-exon-sc0000091-1491911889:548010..548441 | Clytia hemisphaerica | exon |
TCONS_00009212-exon-sc0000091-1510915933:548010..548441 | TCONS_00009212-exon-sc0000091-1510915933:548010..548441 | Clytia hemisphaerica | exon |
TCONS_00009212-exon-sc0000091-1575043694:548010..548441 | TCONS_00009212-exon-sc0000091-1575043694:548010..548441 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000091 | supercontig | sc0000091:545351..548441 + |
Blast
The following BLAST results are available for this feature:
|