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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009205 ID=TCONS_00009205|Name=TCONS_00009205|organism=Clytia hemisphaerica|type=transcript|length=2799bpRun BLAST on NCBI transcript from alignment at sc0000091:506744..521124+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009205 ID=TCONS_00009205|Name=TCONS_00009205|organism=Clytia hemisphaerica|type=transcript|length=14381bp|location=Sequence derived from alignment at sc0000091:506744..521124+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00009205 vs. Swiss-Prot (Human)
Match: TRPM1 (Transient receptor potential cation channel subfamily M member 1 OS=Homo sapiens GN=TRPM1 PE=1 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 6.800e-21 Identity = 124/492 (25.20%), Postives = 228/492 (46.34%), Query Frame = 1
Query: 1147 FVAHKSVTHLMDSIWTGA--MPNNIAWWQVLLMFFCPPFILLYDFDDLELIKYKEVKEN------ETEKVDG-LHGVQIKGDKKLSFFKKWQFLL--------DAPITKFYLSLISYLVFLGFIIHDSIMYDYRSEMQWNEWVPVSFFLSYGTLEVRKILTIDKSGR--RKFKEQYSDIWNIFGAILFWCYFVSMVSRLCDYE---YGHIFMAITATFSVLMLVKKFLGFYKLGLYIIMIYRMFKEMIIFLFLMGVFLLAYGVGMNSLM-AHNQPS---LVNIILRPYFLTVLQQTNFMIDKQNTTAGITAWGKPRYSDHGEYV------GWXXXXXXX---XXXXXXXXXXXXXXFGRIYDEVEEQSNAVWSVQRYQTVNEYVRTSRVPHPFSVIADIYRSLEWITWQCCC---GQNTLRPRSLSMILYEADLENNKKAKKMLTFFEREIAKEVRKRYEEKNSNNDD-VTALTERIEDLTKRIQTLKTKEV 2505
F+AH L+ +W G M N +V++ PP IL +F + Y+ KEN E E D KGD++ K+ + +API KF+ ISYL +L + + I+ EW+ +S+ +S ++R+IL + + G+ +K K + WNI + + + + RL + YG + + F + ++ F LG Y++MI +M +M+ F+ +M V L+++GV +++ +PS NI PY++ + ID G+ Y + G+ + W+ + LV N+L++NLLIAVF + EV+ SN VW QRYQ + + +P P +++ IY + ++ +C G R R L + L + +L K++ F E+ + + R++ +E+ S++D+ + +ER+E+++ R++ + +E
Sbjct: 723 FIAHTCSQMLLTDMWMGRLRMRKNPGL-KVIMGILLPPTILFLEFRTYDDFSYQTSKENEDGKEKEEENTDANADAGSRKGDEENEHKKQRSIPIGTKICEFYNAPIVKFWFYTISYLGYL-LLFNYVILVRMDGWPSLQEWIVISYIVSLALEKIREIL-MSEPGKLSQKIKVWLQEYWNITDLVAISTFMIGAILRLQNQPYMGYGRVIYCVDIIFWYIRVLDIFGVNKYLGPYVMMIGKMMIDMLYFVVIMLVVLMSFGVARQAILHPEEKPSWKLARNIFYMPYWMIYGEVFADQIDLYAMEIN-PPCGENLYDEEGKRLPPCIPGAWLTPALMACYLLVANILLVNLLIAVFNNTFFEVKSISNQVWKFQRYQLIMTFHDRPVLPPPMIILSHIYIIIMRLSGRCRKKREGDQEERDRGLKLFLSDEEL------KRLHEFEEQCVQEHFREKEDEQQSSSDERIRVTSERVENMSMRLEEINERET 1204 The following BLAST results are available for this feature:
BLAST of TCONS_00009205 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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