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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009204 ID=TCONS_00009204|Name=TCONS_00009204|organism=Clytia hemisphaerica|type=transcript|length=3718bpRun BLAST on NCBI protein sequence of TCONS_00009204-protein >TCONS_00009204-protein ID=TCONS_00009204-protein|Name=TCONS_00009204-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1125bp MPTKEEKIPLTPGRRMYNEEKKDVEKGKKSPLRMSTKVSPENPPKKIDGTRun BLAST on NCBI transcript from alignment at sc0000091:503917..521124+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009204 ID=TCONS_00009204|Name=TCONS_00009204|organism=Clytia hemisphaerica|type=transcript|length=17208bp|location=Sequence derived from alignment at sc0000091:503917..521124+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000091:503917..521124+ >TCONS_00009204 ID=TCONS_00009204|Name=TCONS_00009204|organism=Clytia hemisphaerica|type=CDS|length=54048bp|location=Sequence derived from alignment at sc0000091:503917..521124+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009204 vs. Swiss-Prot (Human)
Match: TRPM1 (Transient receptor potential cation channel subfamily M member 1 OS=Homo sapiens GN=TRPM1 PE=1 SV=2) HSP 1 Score: 125.176 bits (313), Expect = 1.036e-28 Identity = 149/610 (24.43%), Postives = 289/610 (47.38%), Query Frame = 2
Query: 1715 NELFLWSVINGYQELSLWLWDKSYGDESFIRVLIGEEV-NLQIKKKMENENIPMLPSKFNDNYETFRDMAVSFLNISFERDHKESIRLLCKKSEVYEDGAEWDTTPLDIAYEIDRCPTFVAHKSVTHLMDSIWTGA--MPNNIAWWQVLLMFFCPPFILLYDFDDLELIKYKEVKENET------EKVDG-LHGVQIKGDKKLSFFKKWQFLL--------DAPITKFYLSLISYLVFLGFIIHDSIMYDYRSEMQWNEWVPVSFFLSYGTLEVRKILTIDKSGR--RKFKEQYSDIWNIFGAILFWCYFVSMVSRLCDYE---YGHIFMAITATFSVLMLVKKFLGFYKLGLYIIMIYRMFKEMIIFLFLMGVFLLAYGVGMNSLM-AHNQPS---LVNIILRPYFLTVLQQTNFMIDKQNTTAGITAWGKPRYSDHGEYV------GWXXXXXXX---XXXXXXXXXXXXXXFGRIYDEVEEQSNAVWSVQRYQTVNEYVRTSRVPHPFSVIADIYRSLEWITWQCCC---GQNTLRPRSLSMILYEADLENNKKAKKMLTFFEREIAKEVRKRYEEKNSNNDD-VTALTERIEDLTKRIQTLKTKEV 3424
+EL +W+V+ Q+++++LW + G+ES + L+ ++ + E++ + + ++N + F +A+ L+ S++ D + +++LL YE ++T L +A + F+AH L+ +W G M N +V++ PP IL +F + Y+ KENE E D KGD++ K+ + +API KF+ ISYL +L + + I+ EW+ +S+ +S ++R+IL + + G+ +K K + WNI + + + + RL + YG + + F + ++ F LG Y++MI +M +M+ F+ +M V L+++GV +++ +PS NI PY++ + ID G+ Y + G+ + W+ + LV N+L++NLLIAVF + EV+ SN VW QRYQ + + +P P +++ IY + ++ +C G R R L + L + +L K++ F E+ + + R++ +E+ S++D+ + +ER+E+++ R++ + +E
Sbjct: 613 HELMVWAVLMKRQKMAVFLWQR--GEESMAKALVACKLYKAMAHESSESDLVDDISQDLDNNSKDFGQLALELLDQSYKHDEQIAMKLL-----TYELKNWSNSTCLKLAVAA-KHRDFIAHTCSQMLLTDMWMGRLRMRKNPGL-KVIMGILLPPTILFLEFRTYDDFSYQTSKENEDGKEKEEENTDANADAGSRKGDEENEHKKQRSIPIGTKICEFYNAPIVKFWFYTISYLGYL-LLFNYVILVRMDGWPSLQEWIVISYIVSLALEKIREIL-MSEPGKLSQKIKVWLQEYWNITDLVAISTFMIGAILRLQNQPYMGYGRVIYCVDIIFWYIRVLDIFGVNKYLGPYVMMIGKMMIDMLYFVVIMLVVLMSFGVARQAILHPEEKPSWKLARNIFYMPYWMIYGEVFADQIDLYAMEIN-PPCGENLYDEEGKRLPPCIPGAWLTPALMACYLLVANILLVNLLIAVFNNTFFEVKSISNQVWKFQRYQLIMTFHDRPVLPPPMIILSHIYIIIMRLSGRCRKKREGDQEERDRGLKLFLSDEEL------KRLHEFEEQCVQEHFREKEDEQQSSSDERIRVTSERVENMSMRLEEINERET 1204 The following BLAST results are available for this feature:
BLAST of TCONS_00009204 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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