TCONS_00009204-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00009204-protein
Unique Name	TCONS_00009204-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1125

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00009204-protein ID=TCONS_00009204-protein|Name=TCONS_00009204-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1125bp
MPTKEEKIPLTPGRRMYNEEKKDVEKGKKSPLRMSTKVSPENPPKKIDGT
TREWQNSLDYVKEHFKTYESCGDTKKGHHLVPCVHFGDVCFEDESHRRAK
FIRMVDTTPPNEIFDLIATHLKYQAPQLALFFGNFKKTNGCLMADIDSQF
HRTRSAWIFTNGLEKSINSFSAERCRTTSIQIGIISANKFFNDKKLTVRN
QACKMFAKSDFGMEETLNTKCDVFLCVDDGSNLNSKQDPSVISKFRSSIA
TYLAEEKRIPSLGIFGKDCIIDDVTTMTSQHVPKIILPGRNGAIDALRIP
EEEKVERDTLKFNDPYGKRKTAFRTRMVSVQEQDESLDVANESKENAIQF
ASEHVKSLYLMKKNEKLLEVILTILAEKYGKDEDQRKTVMAFTILWNQLG
IAEKYFHHYMRELTIESDDFFAIFMLCIAYQRMNFLEHFNLFKPKKIKFN
FEDLEILYGFGAHDGNTKSLLREEFEKGWKDADIPKLKLFTEMTRLNKHS
HAAVTMEHSRNILLRFCKRICKSEQTFLPKVPNKIPAESSHPQVLEEHQI
DIVNELFLWSVINGYQELSLWLWDKSYGDESFIRVLIGEEVNLQIKKKME
NENIPMLPSKFNDNYETFRDMAVSFLNISFERDHKESIRLLCKKSEVYED
GAEWDTTPLDIAYEIDRCPTFVAHKSVTHLMDSIWTGAMPNNIAWWQVLL
MFFCPPFILLYDFDDLELIKYKEVKENETEKVDGLHGVQIKGDKKLSFFK
KWQFLLDAPITKFYLSLISYLVFLGFIIHDSIMYDYRSEMQWNEWVPVSF
FLSYGTLEVRKILTIDKSGRRKFKEQYSDIWNIFGAILFWCYFVSMVSRL
CDYEYGHIFMAITATFSVLMLVKKFLGFYKLGLYIIMIYRMFKEMIIFLF
LMGVFLLAYGVGMNSLMAHNQPSLVNIILRPYFLTVLQQTNFMIDKQNTT
AGITAWGKPRYSDHGEYVGWVYLIIYLLVGNVLILNLLIAVFGRIYDEVE
EQSNAVWSVQRYQTVNEYVRTSRVPHPFSVIADIYRSLEWITWQCCCGQN
TLRPRSLSMILYEADLENNKKAKKMLTFFEREIAKEVRKRYEEKNSNNDD
VTALTERIEDLTKRIQTLKTKEVVQ

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_005168	XLOC_005168	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00009204	TCONS_00009204	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005821	Ion_trans_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005216	ion channel activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport
GO:0006811	ion transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005216	ion channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1094..1121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
IPR005821	Ion transport domain	PFAM	PF00520	Ion_trans	coord: 767..1003 e-value: 8.7E-10 score: 38.1

Blast

[Close]

BLAST of TCONS_00009204-protein vs. Swiss-Prot (Human)
Match: TRPM1 (Transient receptor potential cation channel subfamily M member 1 OS=Homo sapiens GN=TRPM1 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 2.826e-40
Identity = 151/610 (24.75%), Postives = 291/610 (47.70%), Query Frame = 0

Query:  554 NELFLWSVINGYQELSLWLWDKSYGDESFIRVLIGEEV-NLQIKKKMENENIPMLPSKFNDNYETFRDMAVSFLNISFERDHKESIRLLCKKSEVYEDGAEWDTTPLDIAYEIDRCPTFVAHKSVTHLMDSIWTGA--MPNNIAWWQVLLMFFCPPFILLYDFDDLELIKYKEVKENET------EKVDG-LHGVQIKGDKKLSFFKKWQFLL--------DAPITKFYLSLISYLVFLGFIIHDSIMYDYRSEMQWNEWVPVSFFLSYGTLEVRKILTIDKSGR--RKFKEQYSDIWNIFGAILFWCYFVSMVSRLCDYEY---GHIFMAITATFSVLMLVKKFLGFYKLGLYIIMIYRMFKEMIIFLFLMGVFLLAYGVGMNSLM-AHNQPS---LVNIILRPYFLTVLQQTNFMIDKQNTTAGITAWGKPRYSDHGEYV------GWV---YLIIYLLVGNVLILNLLIAVFGRIYDEVEEQSNAVWSVQRYQTVNEYVRTSRVPHPFSVIADIYRSLEWITWQCCC---GQNTLRPRSLSMILYEADLENNKKAKKMLTFFEREIAKEVRKRYEEKNSNNDD-VTALTERIEDLTKRIQTLKTKEV 1123
            +EL +W+V+   Q+++++LW +  G+ES  + L+  ++      +  E++ +  +    ++N + F  +A+  L+ S++ D + +++LL      YE     ++T L +A    +   F+AH     L+  +W G   M  N    +V++    PP IL  +F   +   Y+  KENE       E  D        KGD++    K+    +        +API KF+   ISYL +L  + +  I+          EW+ +S+ +S    ++R+IL + + G+  +K K    + WNI   +    + +  + RL +  Y   G +   +   F  + ++  F     LG Y++MI +M  +M+ F+ +M V L+++GV   +++    +PS     NI   PY++   +     ID           G+  Y + G+ +       W+    +  YLLV N+L++NLLIAVF   + EV+  SN VW  QRYQ +  +     +P P  +++ IY  +  ++ +C     G    R R L + L + +L      K++  F E+ + +  R++ +E+ S++D+ +   +ER+E+++ R++ +  +E 
Sbjct:  613 HELMVWAVLMKRQKMAVFLWQR--GEESMAKALVACKLYKAMAHESSESDLVDDISQDLDNNSKDFGQLALELLDQSYKHDEQIAMKLL-----TYELKNWSNSTCLKLAVAA-KHRDFIAHTCSQMLLTDMWMGRLRMRKNPGL-KVIMGILLPPTILFLEFRTYDDFSYQTSKENEDGKEKEEENTDANADAGSRKGDEENEHKKQRSIPIGTKICEFYNAPIVKFWFYTISYLGYL-LLFNYVILVRMDGWPSLQEWIVISYIVSLALEKIREIL-MSEPGKLSQKIKVWLQEYWNITDLVAISTFMIGAILRLQNQPYMGYGRVIYCVDIIFWYIRVLDIFGVNKYLGPYVMMIGKMMIDMLYFVVIMLVVLMSFGVARQAILHPEEKPSWKLARNIFYMPYWMIYGEVFADQIDLYAMEIN-PPCGENLYDEEGKRLPPCIPGAWLTPALMACYLLVANILLVNLLIAVFNNTFFEVKSISNQVWKFQRYQLIMTFHDRPVLPPPMIILSHIYIIIMRLSGRCRKKREGDQEERDRGLKLFLSDEEL------KRLHEFEEQCVQEHFREKEDEQQSSSDERIRVTSERVENMSMRLEEINERET 1204

The following BLAST results are available for this feature:

BLAST of TCONS_00009204-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00009204-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TRPM1	2.826e-40	24.75	Transient receptor potential cation channel subfam...	[more]

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TCONS_00009204-protein (polypeptide) - C. hemisphaerica