TCONS_00009202 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009202
Unique NameTCONS_00009202
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length509

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009202 ID=TCONS_00009202|Name=TCONS_00009202|organism=Clytia hemisphaerica|type=transcript|length=509bp
aaaatgttttttttgctacATTAGGTTTATATACCGGACGAGATCTGTAT
TTACATTTAATGATTTTAGAgctattttgtatttaaaaattattttaata
tagatattttcaaaattttcttaagtATTTGAATGTATATAGAAATTATG
GACGAAGTGTCTGGGAACAAAAGCCTGGCACAACAAAGGACAGATTGTTT
GATATTGTTGAAGTACATAACAAAGAtcccattttcaaaacatacaaAGG
GATTGCTGTCCATGAGACCAGGCAAGAAGATACCAAACAGTAAAGGCGTC
ACTCACAACAAGTTCAGGCTTATGGTCATGTGATTGGAACAAGGCAGTAT
ATTGAAGAAGATTGGCGAAAGAAACATTTCATTTGGTCTTTATTGAAATG
ACGAATCATGAAGACCATTCCATTAACAAGCTCGTGTAATGACTTTCGCT
CAAACATTTTCATTGCTTGCCACAAGTGGACAAATTTTGGACAATGATGA
GGAATGCAT
Run BLAST on NCBI

transcript from alignment at sc0000091:487478..490819+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009202 ID=TCONS_00009202|Name=TCONS_00009202|organism=Clytia hemisphaerica|type=transcript|length=3342bp|location=Sequence derived from alignment at sc0000091:487478..490819+ (Clytia hemisphaerica)
aaaatgttttttttgctacATTAGGTTTATATACCGGACGAGATCTGTAT
TTACATTTAATGATTTTAGAgctattttgtatttaaaaattattttaata
tagatattttcaaaattttcttaagtATTTGAATGTATATAGAAATTATG
GACGAAGTGTCTGGGAACAAAAGCCTGGCACAACAAAGGACAGATTGTTT
GATATTGTTGAAGTACATAACAAAGAtcccattttcaaaacatacaaAGG
GATTGCTGTCCATGAGACCAGGCAAGAAGATACCAAACAGTAAAGGCGTC
ACTCACAACAAGTTCAGGCTTATGGTCATGTGATTGGAACAAGGCAGTAT
ATTGAAGAAGGTAATTATAGTTTATTGCTTCAAGGAAAGACCTATTTAGA
ATGTATTTGTCCGAAGTCAACGTAAATTCTTGGTTTAACTTAAAGAGAAT
CTTTTACTCTAATCGAACCGAtattagggagtggtcagaaagtatctact
agggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNAGAAAGATTGCCCTTCCGTGTGACAGAAGATCTTAcgaaaagtg
aaaggaagacAATCAAAGAGTGGTGTATGAAAGCCCAAGAAATGAACACG
TCACTAAAGAatgcaaactttaaattcaaagtcaggggagccctaggaaa
aaactctatcttaagaaaattgtaaactgaacaaagagcggttcatagag
gcccatgtgctcgcacggtggcctgcgaacttgtatatcattattattat
tattatgttaTTAATCAGTCAGTTAGAGTGTAGGGAAAAATTAGCAAGGG
GGGGGGTGTGAAATTATTTTAATACTTTtgagggggttggaaaatttttt
ccaggttTGGGGTGGTagtgcgaaattttttttaatttttagaaatatcC
TCCAGTCCCCCCTAGtggatactttctgaccacttcCTTACATGTTCAGT
AATTTTAAGGGTTACGTTCTTGTAAGGGGATGAGCTAAAATGGAGTGGAC
GTCAAAGCTTGTATGTAATAATAGTTACCGAAGCTTGCTGaatctttatc
aaattttcataatttttcaaactttcaaatctTTATTTCTCAACAAACAG
ATTGGCGAAAGAAACATTTCATTTGGTCTTTATTGAAATGACGAATCATG
AAGACCATTCCATTAACAAGCTCGTGTAATGACTTTCGCTCAAACATTTT
CATTGCTTGCCACAAGTAAGTTAAATTAAAGGATCTACTTCAAATATGCA
AGGCAATCTACAACATATGCCATGGTGCTCTAAGTAAACAGACTTAAAAC
AGTAAAGATTATTAAAGTAAAGTAAAGGTCATTCACATCAAGTAAAGCCT
GAATTTATGTGGTGAAAATTGGGCCAATTCAATAATTTCATGCAATTCGG
TGGAATTTATATTAGCGAGTGAACCAGATTTTTGGCTTTATTTTCAGCCA
CTTAATccacttaaagggataatcagatagtATGCAATATTTGGCACGTG
GGTTcttctattgtcctgagcaaattctcaaaatattttttcctaacTAT
GTATTACCCAaagttttttggcttttagaggatgaaaacaatagaatttc
aaagtAAGAACCGTGTAAAAAcccattttctaaaatttcacattttgatA
TCTCAAAATctttggaaaattgttacacaaTAATACTTTGAGAATTTACC
ATAGACGGCTTCTGCAATCTAAATATCTCATAATTGAAAGCAATTACAGA
ACTAGATTTggcgaaaataaattttagtgaCCGACCATAAAAAGAATCAA
CGTAGTGGGAAgaaattttaggcaaaattataaatttcttctcgcgaaaa
tttcttcccttaaaatTTAGTAGCAAAGAATCAAAAATTCATTACCTCCT
TCTTATAGGTGGACAAATTTTGGACAATGATGAGGAATGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005166XLOC_005166Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009202-exon-sc0000091-1491911889:487478..487837TCONS_00009202-exon-sc0000091-1491911889:487478..487837Clytia hemisphaericaexon
TCONS_00009202-exon-sc0000091-1510915933:487478..487837TCONS_00009202-exon-sc0000091-1510915933:487478..487837Clytia hemisphaericaexon
TCONS_00009202-exon-sc0000091-1575043694:487478..487837TCONS_00009202-exon-sc0000091-1575043694:487478..487837Clytia hemisphaericaexon
TCONS_00009202-exon-sc0000091-1491911889:489978..490092TCONS_00009202-exon-sc0000091-1491911889:489978..490092Clytia hemisphaericaexon
TCONS_00009202-exon-sc0000091-1510915933:489978..490092TCONS_00009202-exon-sc0000091-1510915933:489978..490092Clytia hemisphaericaexon
TCONS_00009202-exon-sc0000091-1575043694:489978..490092TCONS_00009202-exon-sc0000091-1575043694:489978..490092Clytia hemisphaericaexon
TCONS_00009202-exon-sc0000091-1491911889:490786..490819TCONS_00009202-exon-sc0000091-1491911889:490786..490819Clytia hemisphaericaexon
TCONS_00009202-exon-sc0000091-1510915933:490786..490819TCONS_00009202-exon-sc0000091-1510915933:490786..490819Clytia hemisphaericaexon
TCONS_00009202-exon-sc0000091-1575043694:490786..490819TCONS_00009202-exon-sc0000091-1575043694:490786..490819Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:487478..490819 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0.131549 tpm) - - (6.79904 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.89215	1.03789	0.937293	0.523997	2.87062	2.2684	1.67245	1.56573	0.996547	1.11095	0.599062	1.33892	2.51681	3.59389	0.872969	1.00889	0.26633	1.00093	0.62856	0.131549	0.686038	1.67313	1.76272	1.23274	3.17424	6.79904	1.78372	3.11505	0.787551	1.87224
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009202 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400450500Sequence
Match NameE-valueIdentityDescription
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