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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009157 ID=TCONS_00009157|Name=TCONS_00009157|organism=Clytia hemisphaerica|type=transcript|length=1566bp
ATAATATTTTGTCTTTTAACATTTTATTGATTAATTAAGTATTCCCATAA
GTCATTGAAAAATTGCTTCCTCAAAATATCTGAACCAATCAAAATCTCTA
AACTCAGAAATCTATGCATCCATCCAATGAACTTGGCGATCAGAACAGAT
TTTTGAAGGCAACGCAACGTCAAGCAAATTCACAAAGAAAGCAGCAGAAA
TTTATTGCCAGGTTTCTTAGCTAGCTGTAATACGTAAATGGAacattttt
cttctgaaaatctCAGTCATAAGATTCTTTTCTTACTATGCAGAACCTCT
TACATGTGAAATTTTGATATATTAAGGATTTTACTTTTACATAAGTGtac
ccgtttcatatcagacacatatttcatatcaggacagtgtcttgctattg
ttatattatgcttatataagcaaaaaaaaatttcttttcctgtttctgac
caatcttgctccacatccgtgtcaatccaatgtgaaaaagcttgtgaatt
gaaattgatgagtaagcaatcAAAACCATTAAGGATTGAAGGATCGAGGT
CTGATCATAATTTGGCTTTCTTTTAATGATGTCCAATATCCTTTCCAATC
ATGCCAGATGATACCATTTGCTTCagatgaagcaactccattatGGCTGT
ATCGACCATTCATGGCTACTCTGTGACACATTAGATGCCACCAAGGGCCA
AATCTGAATGCACAACCTTCAGCATTGCTCCAAACATCATTCCTCGTATC
CACTGTTGAAAATTTCGCTCCATTCATCCTCTCCATGCCGTATAATTCGT
TCGGTGAGTAATCTTGAGTTTCTTGCTCAAAAGTAATTTTGAACCCCTCA
TCCTCATTCTCGACTCGAACACCAAGCATTTTCTTCATACGAGTATCACC
GTCAAATGCTTTTGCCCACACCAAATAATCATACTTCTCCGACGTTGTCA
GAAGATTCAACCATTTGTTACCAAGCCAATATTCACCACTGGCATCACCA
AATCCTTCTTTATAAGCATCCCAATCTGCGTTATAAAAGTCAATACTACC
GTcaaatcttctttgaaaaacCATCCAGCCTCCTCCAGCTATTTCCATCT
CACAATACAGTTGTTTTCGGTAGATTCCTAATATATAAATTTCATATACC
CCGTTGGTACGTTTTCCTTGCTGGTATAACTCTGTACAATCTTTAGCAAT
TCTTAGTGAGTGGTATGTAACTCCTGGTTTATTGAGCAATGTCATTGACT
CATGATAACTTTGTCGATAAAACAGACAGCCGGTGAAAGTTGAAGATCGT
GAAACTtcgaatgaaaaacattgtgGCGAATAATGACAAACGCTGAAACA
TTTTTGATATGGTGCTCCTTCGATTGAATGAAATGGTGTAGCTGTTATTG
ATCTGTTCGTTCCAATAAGGTTAAAAATGGCACCAAATAATTTTCCTATT
ATAACAAAATTTAGGAAGACCAGAAACGTTAGTTTTTTCCTCTTCATTTT
CAAgtgaaaattttcttcacaatcacaatttttcttttgccaccattgaa
aaatatattttttcta Run BLAST on NCBI protein sequence of TCONS_00009157-protein >TCONS_00009157-protein ID=TCONS_00009157-protein|Name=TCONS_00009157-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
MKRKKLTFLVFLNFVIIGKLFGAIFNLIGTNRSITATPFHSIEGAPYQKC
FSVCHYSPQCFSFEVSRSSTFTGCLFYRQSYHESMTLLNKPGVTYHSLRI
AKDCTELYQQGKRTNGVYEIYILGIYRKQLYCEMEIAGGGWMVFQRRFDG
SIDFYNADWDAYKEGFGDASGEYWLGNKWLNLLTTSEKYDYLVWAKAFDG
DTRMKKMLGVRVENEDEGFKITFEQETQDYSPNELYGMERMNGAKFSTVD
TRNDVWSNAEGCAFRFGPWWHLMCHRVAMNGRYSHNGVASSEANGIIWHD
WKGYWTSLKESQIMIRPRSFNP Run BLAST on NCBI transcript from alignment at sc0000090:64383..65948 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009157 ID=TCONS_00009157|Name=TCONS_00009157|organism=Clytia hemisphaerica|type=transcript|length=1566bp|location=Sequence derived from alignment at sc0000090:64383..65948 (Clytia hemisphaerica)
tagaaaaaatatatttttcaatggtggcaaaagaaaaattgtgattgtga
agaaaattttcacTTGAAAATGAAGAGGAAAAAACTAACGTTTCTGGTCT
TCCTAAATTTTGTTATAATAGGAAAATTATTTGGTGCCATTTTTAACCTT
ATTGGAACGAACAGATCAATAACAGCTACACCATTTCATTCAATCGAAGG
AGCACCATATCAAAAATGTTTCAGCGTTTGTCATTATTCGCcacaatgtt
tttcattcgaAGTTTCACGATCTTCAACTTTCACCGGCTGTCTGTTTTAT
CGACAAAGTTATCATGAGTCAATGACATTGCTCAATAAACCAGGAGTTAC
ATACCACTCACTAAGAATTGCTAAAGATTGTACAGAGTTATACCAGCAAG
GAAAACGTACCAACGGGGTATATGAAATTTATATATTAGGAATCTACCGA
AAACAACTGTATTGTGAGATGGAAATAGCTGGAGGAGGCTGGATGgtttt
tcaaagaagatttgACGGTAGTATTGACTTTTATAACGCAGATTGGGATG
CTTATAAAGAAGGATTTGGTGATGCCAGTGGTGAATATTGGCTTGGTAAC
AAATGGTTGAATCTTCTGACAACGTCGGAGAAGTATGATTATTTGGTGTG
GGCAAAAGCATTTGACGGTGATACTCGTATGAAGAAAATGCTTGGTGTTC
GAGTCGAGAATGAGGATGAGGGGTTCAAAATTACTTTTGAGCAAGAAACT
CAAGATTACTCACCGAACGAATTATACGGCATGGAGAGGATGAATGGAGC
GAAATTTTCAACAGTGGATACGAGGAATGATGTTTGGAGCAATGCTGAAG
GTTGTGCATTCAGATTTGGCCCTTGGTGGCATCTAATGTGTCACAGAGTA
GCCATGAATGGTCGATACAGCCataatggagttgcttcatctGAAGCAAA
TGGTATCATCTGGCATGATTGGAAAGGATATTGGACATCATTAAAAGAAA
GCCAAATTATGATCAGACCTCGATCCTTCAATCCTTAATGGTTTTgattg
cttactcatcaatttcaattcacaagctttttcacattggattgacacgg
atgtggagcaagattggtcagaaacaggaaaagaaatttttttttgctta
tataagcataatataacaatagcaagacactgtcctgatatgaaatatgt
gtctgatatgaaacgggtaCACTTATGTAAAAGTAAAATCCTTAATATAT
CAAAATTTCACATGTAAGAGGTTCTGCATAGTAAGAAAAGAATCTTATGA
CTGagattttcagaagaaaaatgtTCCATTTACGTATTACAGCTAGCTAA
GAAACCTGGCAATAAATTTCTGCTGCTTTCTTTGTGAATTTGCTTGACGT
TGCGTTGCCTTCAAAAATCTGTTCTGATCGCCAAGTTCATTGGATGGATG
CATAGATTTCTGAGTTTAGAGATTTTGATTGGTTCAGATATTTTGAGGAA
GCAATTTTTCAATGACTTATGGGAATACTTAATTAATCAATAAAATGTTA
AAAGACAAAATATTAT Coding sequence (CDS) from alignment at sc0000090:64383..65948 >TCONS_00009157 ID=TCONS_00009157|Name=TCONS_00009157|organism=Clytia hemisphaerica|type=CDS|length=969bp|location=Sequence derived from alignment at sc0000090:64383..65948 (Clytia hemisphaerica)
ATGAAGAGGAAAAAACTAACGTTTCTGGTCTTCCTAAATTTTGTTATAAT
AGGAAAATTATTTGGTGCCATTTTTAACCTTATTGGAACGAACAGATCAA
TAACAGCTACACCATTTCATTCAATCGAAGGAGCACCATATCAAAAATGT
TTCAGCGTTTGTCATTATTCGCcacaatgtttttcattcgaAGTTTCACG
ATCTTCAACTTTCACCGGCTGTCTGTTTTATCGACAAAGTTATCATGAGT
CAATGACATTGCTCAATAAACCAGGAGTTACATACCACTCACTAAGAATT
GCTAAAGATTGTACAGAGTTATACCAGCAAGGAAAACGTACCAACGGGGT
ATATGAAATTTATATATTAGGAATCTACCGAAAACAACTGTATTGTGAGA
TGGAAATAGCTGGAGGAGGCTGGATGgtttttcaaagaagatttgACGGT
AGTATTGACTTTTATAACGCAGATTGGGATGCTTATAAAGAAGGATTTGG
TGATGCCAGTGGTGAATATTGGCTTGGTAACAAATGGTTGAATCTTCTGA
CAACGTCGGAGAAGTATGATTATTTGGTGTGGGCAAAAGCATTTGACGGT
GATACTCGTATGAAGAAAATGCTTGGTGTTCGAGTCGAGAATGAGGATGA
GGGGTTCAAAATTACTTTTGAGCAAGAAACTCAAGATTACTCACCGAACG
AATTATACGGCATGGAGAGGATGAATGGAGCGAAATTTTCAACAGTGGAT
ACGAGGAATGATGTTTGGAGCAATGCTGAAGGTTGTGCATTCAGATTTGG
CCCTTGGTGGCATCTAATGTGTCACAGAGTAGCCATGAATGGTCGATACA
GCCataatggagttgcttcatctGAAGCAAATGGTATCATCTGGCATGAT
TGGAAAGGATATTGGACATCATTAAAAGAAAGCCAAATTATGATCAGACC
TCGATCCTTCAATCCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009157-exon-sc0000090-1491911889:64383..65948 | TCONS_00009157-exon-sc0000090-1491911889:64383..65948 | Clytia hemisphaerica | exon |
| TCONS_00009157-exon-sc0000090-1510915933:64383..65948 | TCONS_00009157-exon-sc0000090-1510915933:64383..65948 | Clytia hemisphaerica | exon |
| TCONS_00009157-exon-sc0000090-1575043694:64383..65948 | TCONS_00009157-exon-sc0000090-1575043694:64383..65948 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000090 | supercontig | sc0000090:64383..65948 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00009157 vs. Swiss-Prot (Human)
Match: FBCD1 (Fibrinogen C domain-containing protein 1 OS=Homo sapiens GN=FIBCD1 PE=1 SV=2) HSP 1 Score: 137.887 bits (346), Expect = 2.688e-35 Identity = 84/225 (37.33%), Postives = 126/225 (56.00%), Query Frame = -1
Query: 547 KDCTELYQQGKRTNGVYEI----YILGIYRKQLYCEMEIAGGGWMVFQRRFDGSIDFYNADWDAYKEGFGDASGEYWLGNKWLNLLTTSEKYDYLVWAKAFDGDTRMKK--MLGV---RVENEDEGFKITFEQETQDYSPNELYGMERMNGAKFSTVDTRNDVWSNAEGCAFRFGPWWHLMCHRVAMNGRYSHNGVASSEANGIIWHDWKGYWTSLKESQIMIRP 1194
+DC ++ G++ +GVY + Y G Q+YC+M GGGW VFQRR DGS++F+ WDAY++GFG +GE+WLG K ++ LTT Y+ V + F+ T + GV V+ E++G+ +T DYS + + +G +F+T D +D N AF G WW+ CH +NG+Y G +S A+G+ W W G+ SLK S++ IRP
Sbjct: 242 RDCLDVLLSGQQDDGVYSVFPTHYPAGF---QVYCDMRTDGGGWTVFQRREDGSVNFFRG-WDAYRDGFGRLTGEHWLGLKRIHALTTQAAYELHVDLEDFENGTAYARYGSFGVGLFSVDPEEDGYPLTVA----DYSGTAGDSLLKHSGMRFTTKDRDSDHSEN-NCAAFYRGAWWYRNCHTSNLNGQYL-RGAHASYADGVEWSSWTGWQYSLKFSEMKIRP 456
The following BLAST results are available for this feature:
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