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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009126 ID=TCONS_00009126|Name=TCONS_00009126|organism=Clytia hemisphaerica|type=transcript|length=1046bp
tttagaaaaaagtgaaagcaaatttaaaaagctctacCAGGAAAAGACCA
AAACAGAGAAGCAGACAGTTAAATTCAATCTTCAGTTGGTGCAAATCGGA
GGGATAACGTAATGGGCCGTAAACTCAATAAAtatggcaaaaatgaaaaa
tgcagCAGCATAGAGAAAGAATCACTCTTACCGGAGCCCGAAAAACAACC
AGTCAGTACTAATAACTTAGACGTCCCGCCGGCTGCTAAGAGGAAAATGC
CGGAGCGAAAGAAATCGGCTTGGGCTCCGGTAGCGACGGCGACGGCTTTT
GAAGATGTGCCGGTGTTTACCATATGTCCTTATTGCTCGTCAAAAGTggt
gacaaaaacacaattcaAAAGAGGGAAGAAACATATgttttgttgttgct
gttgtctACCATACTTCCTAGACGTCTTCAAAGATGTCATCCATAGCTGT
CCAAAATGTAACACACAAATCGCTATATACAACCGCTTCCAATTCTTCAA
TCCCAACAGAGATTCCAACAGCGCGGCTGAAGAAACGTGTGAAGGATCTT
CTGATGAACGCTAATTGGTCGAAATAATGGAAATACAGTTTTCCGATTGG
TTCGTTTATTGGTTTTTCTGTAAACCCATTGGCTGATGAGTTCATCCACG
TTTTAAGAGGATGCAAATTACAGAACTTCTTTCCAATATGAGATGAGAAT
TGGATATTTGACATTTGAACTATTTTGATATTGTCATTTGCTAAAACAGA
AACAATGTACAAAAACTTGAAGCATTGAATAGAGTGACTTTGTGAATGGT
ATATACAATGTTATGTATACAGAGTGTTCCGAAAAAAAGCATGTACAGTA
TTTTAATCATAAGATAGCTCGTTTCTTGATTGATAGAATACAAGGCTCTT
ACagctaattgaaaaaaaacttttttagaaTAGAAGCTTTTGACCTTTGA
ATGTTAGAATTACGCTAGAGTTAAACTTGATAGTCGTTCTTGCTATTTAA
AAGTAGCTCAGAAGAATCTTTTACCTTATAACTCCACAAATTTgat Run BLAST on NCBI protein sequence of TCONS_00009126-protein >TCONS_00009126-protein ID=TCONS_00009126-protein|Name=TCONS_00009126-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
MGRKLNKYGKNEKCSSIEKESLLPEPEKQPVSTNNLDVPPAAKRKMPERK
KSAWAPVATATAFEDVPVFTICPYCSSKVVTKTQFKRGKKHMFCCCCCLP
YFLDVFKDVIHSCPKCNTQIAIYNRFQFFNPNRDSNSAAEETCEGSSDER Run BLAST on NCBI transcript from alignment at sc0000090:16870..19539- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009126 ID=TCONS_00009126|Name=TCONS_00009126|organism=Clytia hemisphaerica|type=transcript|length=2670bp|location=Sequence derived from alignment at sc0000090:16870..19539- (Clytia hemisphaerica)
TTTAGAAAAAAGTGAAAGCAAATTTAAAAAGCTCTACCAGGAAAAGACCA
AAACAGAGAAGCAGACAGTTAAATTCAATCTTCAGTTGGTGCAAATCGGA
GGGATAACGTAATGGGCCGTAAACTCAATAAATATGGCAAAAATGAAAAA
TGCAGCAGCATAGAGAAAGAATCACTCTTACCGGAGCCCGAAAAACAACC
AGTCAGTACTAATAACTTAGACGTCCCGCCGGCTGCTAAGAGGAAAATGC
CGGAGCGAAAGAAATCGGCTTGGGCTCCGGTAGCGACGGCGACGGCTTTT
GAAGATGTGCCGGTGTTTACCATATGTCCTTATTGCTCGTCAAAAGTGGT
GACAAAAACACAATTCAAAAGAGGGAAGAAACATATGTAAGAAATAAATG
GTTTAACTTATAGTCGAATCTCTCTAATTCGATTTTCAAGGGGAATTAGA
TATTAATAGATAGGAGTTTTATATTTTTTTAGGATGGATACATGTTTTTT
TTATAAGCATATGAAAATCCGAAAACAGGCTCAGAGATGCTTAGGTCGAA
AGCTTAATAAGGCTGAAAAAAAGCTTAAGGAAACGCTTATATCCTAATAC
TTAATACTGCTATACTACTGCTTATATCCATACTACAAAGTAGCTTATAC
TTTTTTCATAGGCTCGAGGAGGTAATGCTTAGCATATGCTTCATTTTTCC
CCATATCTGAGCCTAGATATGCTTAAAAGTGCAATGCTTATAAAAAACAT
GTACAAGATGAATATAAGTGAAACCCTATGGGCACGCAACGTCTTATGGA
CATTCAATGGACCGTTTTATGACCTTTGGACGTCCTAGAAACGTACATTA
GACGTCCAAAAGACGTTTGTGCCAATCGGGAATGGCCTCGTTTTCATGCA
GAATCTCGACGCTTTTTACGCGATTACTTTTAATTGCAACTTTTCAAAGG
AAAGTGCATTATTAAGTATTAAGTGAAAATTATTTTGAATTAGTTCCTCC
ATGACATTTTGAAAATGAACGATATCTGGTTATTCATGGCTTTCTAAAGA
AATAGGATTAAAATTTATTGACAAAAAAAATTCCTTTTGACGGATTGTTT
TGGCGGGGAATTTTGTTTTGAAACATCTTTTTACAAATAAGGCATGATCT
ATGGCATTGGGCTTTTCGAGAATTTTTTTTACCCAAACAGTTGAGGATAT
TGATTTTTCGAAGTATCGAACCCCCTGGATATCCTACTTTATTAGTAAAG
ACCCCCTGGATATCCTCTCTTATAAAGATGCTTATCCCTGGATATCGTAT
TTTTTACTTGAAAAGACACCCCCTGGATATCCGCTCCCTTGTAGATATTT
AACCCCCTGGATATCCACTTCTGAACTAAAATCGTTAACACACTGGATAT
CCAATATCCTCAACAGGGGGCACGGACTATTCTTGGAAAAGCCTATTAAA
TGTTAGGGTTCTATATTTGATTTTATTTCTGAAGAAAACAGAAAGCTCTC
CATATTTCGCATAGGGTGTTGAATTAAAGGGATAATGAGATGGTTTAAGA
AATTTAGCCTGCAGAAATCACCTGTGTTCTTGAGTTGAGTATTTTGGTCG
TACTTTTTATCAAATTTGAGATCCATATCACATTTCGAGATTTTTAAAAA
TGGGTTTTGACAAAATTCTAGATCGTTTGAGATATTTGGCCAGCAGAAAC
CTTCTGAGATATTAAGTGAAACCTCCAAGTATTTTCATGTAACTTTTTCC
AAACTCGATATCTATCCCAATTTGAAATCTTTAAAAATGAGTTCTTAAAA
TTCCTCTTTTTTACTAAAAGTTAAAAAGTTACAATTCGAAGACCTCAACT
TTGGAAGATATTTAAGCCAATGAATCAATATACCAATAAATACCAATCTA
ATTTATCCCTTTTAACTTCTGATAAAAAAGAAAATTGGAATAATAAATCA
TATGTAAAACTCACAGTTCTGCCATCATGCATCAATCAGGTTCTTCTTGC
TCCATTGTAGGTTTTGTTGTTGCTGTTGTCTACCATACTTCCTAGACGTC
TTCAAAGATGTCATCCATAGCTGTCCAAAATGTAACACACAAATCGCTAT
ATACAACCGCTTCCAATTCTTCAATCCCAACAGAGATTCCAACAGCGCGG
CTGAAGAAACGTGTGAAGGATCTTCTGATGAACGCTAATTGGTCGAAATA
ATGGAAATACAGTTTTCCGATTGGTTCGTTTATTGGTTTTTCTGTAAACC
CATTGGCTGATGAGTTCATCCACGTTTTAAGAGGATGCAAATTACAGAAC
TTCTTTCCAATATGAGATGAGAATTGGATATTTGACATTTGAACTATTTT
GATATTGTCATTTGCTAAAACAGAAACAATGTACAAAAACTTGAAGCATT
GAATAGAGTGACTTTGTGAATGGTATATACAATGTTATGTATACAGAGTG
TTCCGAAAAAAAGCATGTACAGTATTTTAATCATAAGATAGCTCGTTTCT
TGATTGATAGAATACAAGGCTCTTACAGCTAATTGAAAAAAAACTTTTTT
AGAATAGAAGCTTTTGACCTTTGAATGTTAGAATTACGCTAGAGTTAAAC
TTGATAGTCGTTCTTGCTATTTAAAAGTAGCTCAGAAGAATCTTTTACCT
TATAACTCCACAAATTTGAT Coding sequence (CDS) from alignment at sc0000090:16870..19539- >TCONS_00009126 ID=TCONS_00009126|Name=TCONS_00009126|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at sc0000090:16870..19539- (Clytia hemisphaerica)
GTTTTGTTGTTGCTGTTGTCTACCATACTTCCTAGACGTCTTCAAAGATG
TCATCCATAGCTGTCCAAAATGTAACACACAAATCGCTATATACAACCGC
TTCCAATTCTTCAATCCCAACAGAGATTCCAACAGCGCGGCTGAAGAAAC
GTGTGAAGGATCTTCTGATGAACGCTAAATGGGCCGTAAACTCAATAAAT
ATGGCAAAAATGAAAAATGCAGCAGCATAGAGAAAGAATCACTCTTACCG
GAGCCCGAAAAACAACCAGTCAGTACTAATAACTTAGACGTCCCGCCGGC
TGCTAAGAGGAAAATGCCGGAGCGAAAGAAATCGGCTTGGGCTCCGGTAG
CGACGGCGACGGCTTTTGAAGATGTGCCGGTGTTTACCATATGTCCTTAT
TGCTCGTCAAAAGTGGTGACAAAAACACAATTCAAAAGAGGGAAGAAACA
TATGTTTTGTTGTTGCTGTTGTCTACCATACTTCCTAGACGTCTTCAAAG
ATGTCATCCATAGCTGTCCAAAATGTAACACACAAATCGCTATATACAAC
CGCTTCCAATTCTTCAATCCCAACAGAGATTCCAACAGCGCGGCTGAAGA
AACGTGTGAAGGATCTTCTGATGAACGCTAAATGGGCCGTAAACTCAATA
AATATGGCAAAAATGAAAAATGCAGCAGCATAGAGAAAGAATCACTCTTA
CCGGAGCCCGAAAAACAACCAGTCAGTACTAATAACTTAGACGTCCCGCC
GGCTGCTAAGAGGAAAATGCCGGAGCGAAAGAAATCGGCTTGGGCTCCGG
TAGCGACGGCGACGGCTTTTGAAGATGTGCCGGTGTTTACCATATGTCCT
TATTGCTCGTCAAAAGTGGTGACAAAAACACAATTCAAAAGAGGGAAGAA
ACATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009126-exon-sc0000090-1575043694:19154..19539 | TCONS_00009126-exon-sc0000090-1575043694:19154..19539 | Clytia hemisphaerica | exon |
| TCONS_00009126-exon-sc0000090-1575043694:16870..17529 | TCONS_00009126-exon-sc0000090-1575043694:16870..17529 | Clytia hemisphaerica | exon |
| TCONS_00009126-exon-sc0000090-1510915933:19154..19539 | TCONS_00009126-exon-sc0000090-1510915933:19154..19539 | Clytia hemisphaerica | exon |
| TCONS_00009126-exon-sc0000090-1510915933:16870..17529 | TCONS_00009126-exon-sc0000090-1510915933:16870..17529 | Clytia hemisphaerica | exon |
| TCONS_00009126-exon-sc0000090-1491911889:19154..19539 | TCONS_00009126-exon-sc0000090-1491911889:19154..19539 | Clytia hemisphaerica | exon |
| TCONS_00009126-exon-sc0000090-1491911889:16870..17529 | TCONS_00009126-exon-sc0000090-1491911889:16870..17529 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000090 | supercontig | sc0000090:16870..19539 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006629 | LITAF |
Blast
The following BLAST results are available for this feature:
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