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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009102 ID=TCONS_00009102|Name=TCONS_00009102|organism=Clytia hemisphaerica|type=transcript|length=1647bpRun BLAST on NCBI protein sequence of TCONS_00009102-protein >TCONS_00009102-protein ID=TCONS_00009102-protein|Name=TCONS_00009102-protein|organism=Clytia hemisphaerica|type=polypeptide|length=466bp MADTPNSISEIPQDVLQDLCSRFLINIPDNEKNDMVRICFQIEQAHWYYIRun BLAST on NCBI transcript from alignment at sc0000090:453275..467382+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009102 ID=TCONS_00009102|Name=TCONS_00009102|organism=Clytia hemisphaerica|type=transcript|length=14108bp|location=Sequence derived from alignment at sc0000090:453275..467382+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000090:453275..467382+ >TCONS_00009102 ID=TCONS_00009102|Name=TCONS_00009102|organism=Clytia hemisphaerica|type=CDS|length=12609bp|location=Sequence derived from alignment at sc0000090:453275..467382+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009102 vs. Swiss-Prot (Human)
Match: DCP2 (m7GpppN-mRNA hydrolase OS=Homo sapiens GN=DCP2 PE=1 SV=2) HSP 1 Score: 269.626 bits (688), Expect = 1.718e-83 Identity = 119/233 (51.07%), Postives = 159/233 (68.24%), Query Frame = 2
Query: 101 EIPQDVLQDLCSRFLINIPDNEKNDMVRICFQIEQAHWYYIDFCRQEDPDLPPCGMKPFMNMIFSRFEFLNKTGQSVSAIYEEWRKYKIRVPVFGAILIDDTLEQILLVQGFHNKASWGFPKGKVNKDEEGLTCAIREVWEEVGFDISKLAKESDFIENNFHDHQIRLYIVPGVDKTFDFKPNTRGEIKEIRWFDLSYLPAHKRDMKPK-EIGFTPNNFFMIHPFVRPLRKWI 796
EIP VL D CSRF+++IP E+++ +R+CFQIE AHW+Y+DF Q P LP CG++ F +FS FL G+ V + +EW++YK+ VP +GAI++D+TLE +LLVQG+ K+ WGFPKGKVNK+E CA REV+EE GFDI + D+IE +D RLYI+PG+ K F P TR EI+ I WF + LP H+ DM PK ++G PN FFM PF+RPLR W+
Sbjct: 7 EIPGSVLDDFCSRFILHIPSEERDNAIRVCFQIELAHWFYLDFYMQNTPGLPQCGIRDFAKAVFSHCPFLLPQGEDVEKVLDEWKEYKMGVPTYGAIILDETLENVLLVQGYLAKSGWGFPKGKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGIPKDTKFNPKTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWL 239 The following BLAST results are available for this feature:
BLAST of TCONS_00009102 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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