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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009089 ID=TCONS_00009089|Name=TCONS_00009089|organism=Clytia hemisphaerica|type=transcript|length=164bp TTCATGCCAGGCTCGTTCAAACTCCAAACATTGCTCAATTTTCTTCGGAT GGAGTAATATAAAACTACCTTTTTCCCATAATCCTCTgtaaagatcttca aacatgaaCATATGGTCATCTGTACAGTCGAAAGCATCCCAAGGGTCATC GTTCTCGACTCCTT Run BLAST on NCBI transcript from alignment at sc0000090:107046..120269+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009089 ID=TCONS_00009089|Name=TCONS_00009089|organism=Clytia hemisphaerica|type=transcript|length=13224bp|location=Sequence derived from alignment at sc0000090:107046..120269+ (Clytia hemisphaerica) TTCATGCCAGGCTCGTTCAAACTCCAAACATTGTTCAACTTTCTTCGGAT
GGAGTAACACAAAACTACCTTTTTCCCATNGAACTCCAAACAAAGTTCAA
CTTTCTTCGGATGAAGTAACACAAAACTACCTTTTTCCCATAACCCTCTG
AAGAGATCTTCAAACATGAACATTATGGTCATCTGTACAGTCGAAAGCAT
CCCAAGGGTCATTGCTCTCGACTCCTTGGAAAATATACTTTTTATACCAT
TCGGGATGTGTCTCGAAGTATTTCATATCTCgtttcataaaaatatattt
tgatgtcCTGTATGGAGTATTGTCTTCCATCATTTTCGAAATCCCCTTAA
ACCATTCCTCATAAGAGTCGTATAAACTATGACCCAATTTCTTTCCTTGG
AGAAAAGTCTCAGCTCCCCAAACCATATGTTCTATATCATCATGTGGtcc
aattttcattttgatatctTCAATTTGGCCTTTCAACTCGTCCACAACTA
AACGTTCAGATATTATAATTGACAGAGCTGTTACCGAGGAAACgaaaaaa
atgaagagaaaATACGAGCAACAAATACGACAGTTGGAGCTGGAGAGAGA
TGAAGAAATCAAAGCAAGAGAAAGAATGCAACGTGCTCATGAATACTATA
TCAAACGAGAAGAAGAAAGATTGAAGGAGAAACAGAatgaaatcaaaata
agagaaaatcaagaaattaatACTACAGAAACTTCTACTTCAAATGAAGG
TGTTTCATTGGATCGAAAGACTTTTCCACGTTTTTACACCAAGTTCGAAA
GGTTGACATGGGGTATTGAAACCTATTTTGAGCGTATAACAAGTGATGTG
AAATTATACGATTCTTATGAAGCATGGTTTGCAGACGTATCAAAATTAAT
GGCTAATAGAGCTATGTATTTGAATGTTAAACAGTTTTTCTTGAAGAAAG
AATTCGAGTCGAAGTCTCAAAATAAGTTATACCTTCATAATCAAAAGGTC
TCGGGCGAGGAAGACAAATCAATGAACGATAAATTCACTTTTGAACTAGA
TGTTGCGAAAATAAGCAATTCATTCTGGGAGAAAGGACACTTCGTATTGC
TCCACCCCAGTCTCCAAAAAAGTTGTTCACATTTTGAAAGCTTTCAGGTT
GCTGGATTGTCGGAAGAGTATTATCATGGAGATAAAAATTCCGCAATCAT
TTTCGGAACACTTGATGAAAATTTGTTGCGACAAATACACAGCTTGTAGA
TAATactgaaaatttatcattgTTCTTAGTTTTATCTGATAGTCTAGATA
GATCAATTCTTAAAACACATTACTAGTATAGGAAATtacctaaaaaaaat
taaaaatgcacccatttttttgtaaatagcCATGGATTTCAATCCTTACA
ATGATGTTTTAAGTTTTCATGGTGCCGTAGCCTCATATCATATGCagcat
ttttctttatttgagCTTTTTAATATTTCCTCTTCGTCTCTCCTTTTAGC
GaaacattaaaattaaaaaaaagatcagCCAAAGAAAATGTCATCTGCAA
ATAGGCCTTGTGaaagggtcttcttttagctggatacacaGTAAGGGTTT
GTTTGGGGACTTCTGAGTTGCAAGTCTGGCAGTTAAAATATGATGTATCT
TTAAAAGTTTCGACTTTTACCCGTTTTGATTTGTTTCGCACATtcattgt
gtcgacatctcattttcaggtggcttcagcaaaataagatatgaaatcaa
actacagtgtaagggtcagaaacattcggtaaaatgcactgtaagggtac
cttttcactgctcaaagGCGGTACTGTAAGGATCCGATTTTGGAAGACAT
TNTTGTAAATATCCATGGATTTCAATCCTTACAATGATGTTTTAAGTTTT
CATGGAGCCGTAGCCTCATATCATATGCagcatttcatttttctttattt
gagCTTTTTAATATTTCCTCTTCGTCTCTCCTTTTAGCAaaacattaaaa
ttaaaaaaaagatcagCCAAAGAGAATGTCATCTGCAAATAGGCCTAAAC
TAAATGTACGCACAAGAACACTGGTCAACGAAAAAGTGGGGAATGTCAAG
AAGGGTTATGAAGAAACAATTGAGAGATTGAAAAACGAAATTAAAGGAAT
AAAATATGAAATGAAGACAGAAAGGGAAAAACATCCggggaaaattgaca
aaattgaaaatgagtACCACACGACAAGAGACACTTTAGGCATTGTGAAA
GGCCAGATTGAagatatcaaaatgaaaattggaCCACACGATGATATAGA
ACATATGGTTTGGGGagctgaaacatttttccaaggaAAGAAATTGAGTC
ATATTTTATACGACTCTTATGAGGAATGGTTTGAGGGAATTTCGAAAATG
ATGGAGGACAATACTCCGTATAGgacatcaaaatatatttttatgaaacG
AGATATGAATTACTTCGAGACACATCCAGAATGGTATAAACAGTATATTT
TCCAAGGAGTCGAGAACGATGACCCTTGGGATGCTTTCGACTGTACAGAT
GACCACATGttcatgtttgaagatctttacAGAGGATTATGGGGAAAAGG
TAGTTTTATATTACTCCATCCGAAGAAAATTGAGCAGTGTTTGGAGTTCG
AACGAGCCTGGCATGAAACAAATAATTATAATGATTATAGCCAATGGCAA
ATTGATGTCACCAGTGATTTCCATGAACCAGGTTTTGCAATGATGGTTGG
AGTCTTGAATAAAATCTCTTTGTAAATAATACAGTTTTaataccgtaaat
cctcgaataagcgccctgCTTGAATATACGCCCCCCTTAGGGCCTAGAAA
ATTAAATAAGCAcccgggcgcttattcgaggatttacggtaaTCCGAAAT
CATGGGTATTAATgttgagaattttcaaaatagttaGTAAAGTTATTGAA
ATGGCTCATTTGCTGATAAAAATAGTTGGTATTTCGAGAGAAAAACAACA
AGGATaggctttttctttttttctggcCCTCCTTTGAGCCTCGATTTTTT
CTCTTAGCATGTTTtaaaactaagaaaaaaattgagattttttttaattt
tcactgaCAGTATTTTTTAATAACTTCACCTTAGTTCTCTTATAATCTCA
CGtgtgttcttaaattgttcttttattttttggcagtcttcttgttctta
taaaattgttctataaaAAGCATGTACCGTGATTCtcaccaaaattgaaa
attattaagCAGAAATGTTGGCGAATGATAAGAAGTGTTTGTCTTGCTTA
AGGGCGCTGctttacaaacatcaattttttcggagCATTTTCCAAGCAAA
TTTAAGCAAAATCGCTTTCAATGTAACGCTCCCTTCAATGTAACGACTAT
CGTAACGGCTATTCACgattttaacttgatttttgctTGCATTTCTTGAA
GATTTCGTGTCGACCGATAAAAACAATGCTTAACGCCCTTTTAGAATATC
TTGTgtattaaagcgctgtaagaaGTTTTACCTTGAATTTTCTAGTATAT
TtctttgattaatttttaattAAGTTTCACAATTAAAATTTCTCTTcttg
cagaaaaaaaatcaaagaaaaaagtatcGATTTGCCAACGAAATAAGATG
TCATCACCAAAAGTGCCTAAACAAAATGTACACACAAGACAACTGGTTGA
CGAAAGGGTGGTAAAAATCAAGAAGGGTTATGAAGAAGAcattgaaaaat
tgaccaatgaAATTGAAGGAGTAAAACTTGAAATGAACAGAGATGAAAAA
GTCTACAGAAAGAATgtggaaaaacttaaaaatgaatATCACGAAACAAG
AGATATTATAGACAATGTGAAAGGCCAGATTGAagatatcaaaatgaaaa
ttggaCCGCATGAGGATATAGAACATATGGTTTGGGGAGCTGAGACATTC
TTCCAAGGAAAGAAATCGAGTCATAGTTTATACGACTCTTATGAGGAATG
GTTTAAGGGAATTTCGAAAATGATGGAAGACAATACTCCGTACAGGACAT
CCAAATATATCTTCATGAAACGAGATTCACTCTATCTTGAAAGTTTACCT
GACTCGTATACGCATTATATTTTTACGGGAATCGAGAGCGATGATCCCTG
GGATGCTTTTGATTATGGTGATGATAATACCTttatgtttgaagatcttt
acAGAGGATTATGGGAAAAAGCCAGTTTGGTGTTACTCCATCCGCAGAAA
GTTGAACTTTGTTTGGAATTCGAAAGAACATGTCATGAAACAGACATTTA
TAACAATTATAGTGAATGGTGTGTTGATGGTGTCACCAATGATTTTCATG
AGCCACGTTTTGCAATGATGGTAgggattttaaataaaatcagTGAATGA
TGTGATCACTATAtggaatctttttgaaaacgtttCTAGATACAGTTATA
TATACTCTATCCAATTCGATCATTCAGGGATAAAGAAATTtctttcgaat
tagagaaagattcgagttACGAAGAGTATTTTTAAGTATTATACTTGTAG
AGATTCGAATAAGAGAGGGCTGACTGTTCGTGCTTTTCTTACGATAAGAA
CATTTCGTGAGaacatttttttcagaaatacgAAACGAGCaataattgcc
gtttttatcttaaacacccaactgtcAACAGAGCGTTTTATTATCGATTA
ATtagggggcactcgatttctaaacggcAGCATGTACCGCCAAAAGAATG
GCTTCCAAAATCGAATCCTTACAGTACCGCctttgagcagtgaaaaggta
cccttagagtgcattttaccgaatgtttctgacccttacagtgtagtttt
aagatttcatatcttattttgctgaagctaCCTGAAAACAAGATGTCAAC
ACAATGAATGTGCGAAACAAGTCAAAACTTTTATAGAATACATCATATTT
TAACTGCCAGACTTGCAACTCAGACCTCCCCAAAcaaacccttacagtgt
atccagctaaaagaagacccttgtagtgcgctctatcaaaagtaaaaccc
ttacagtgcatttcgaggaccccaaaaaacctaccctaaagggcggcaca
tgccgtgcGTCAGACCATACGAGTCTCCCCCGGGATCTTACACAAAAGAT
TAAGAATATCcctgatgaaaagaaaaaaacaccattcttataataAACGC
AGTAATCTATCTCTCATGTTTTGACCAGCGGTTACAGGCAAagcatgttc
ttaatatttcgcatttttgagcatcatttttcttaccaaattgttcttat
aaaatataaagaGACTACTGGCTACAAAGCAGATAAATGTTACACCACCC
TAGACAAACCATATCCGTAAATTACACACAAGAAAATGCCGACCACATCA
CTTATGATGGTAAAGGAAAAAACATTACAGAATCACTTGTTTGTAGCACA
AGACTAAAAAAGGGGTGATTTTCCTTGACAACAAACATacgtttgaaaaa
agaaattctcaGAATGTTCTTNCTAAAAAAGGGGTgattttcctttacaa
caaacatacgtttgaaaaaagaaattctcaGAATGTTCTTTTAAGTAGAG
AAAGAAAAGCTTATGTCGTCAAATTACATCATAATATCACAGTGTGGTGT
AATCAGGCCCTTATCATTCCTTTTACATACACAATAGAATTTGTTGTATT
TATAAAAGTTCATTTGGTTTACAAGTTTGATATAAAACATAAGTTATCAA
AGAGAAAACCATGATGGTTCTATGTTCGGTCTACCGTAGCTGTAGAATGT
TCAATTTGTTGTGATTCTATGGTTTGGAAACATTGAATTCTCTTATcaac
ctacacgttttttttttataagaacaaactatataagaacataaggcttc
gaggcccaaaaatttaagaacattctaagaacatactaaggctttggaga
cttaaaaacattcaatttcttaagaaattacatcaaaatgctcataaaat
gctgaaattaagaacattttaagaacatttttaggcttcaaatccaaaaa
actaagaacatccgaaggcttccaaaatttttgatgttcttataaaaaaa
aaaacgtgtagcatcAAGTATCAACTAACCATTTACATTTGATGTAAATC
GGTATAGCTCACAAAGCTGACATTGGTTATTTGAGATGTTGAAGTGATTT
ATTATAAGGAGAGTGTTATTATAGGAAAATAGTAGGAAAATAATTTGGTT
CTCCGATTTTAAAGAAAGATGAGCTCGTCCACAACTAAACGTTCAGATAT
AATGGTTGACAGAGCTGTTAACGAGGAAACGAAAAAAATGAGGAGAAAAT
ACGAGCAACAAATACGAGAGTTGGAGCTGGAGAGAGATGAAGAAATCAAA
GCAAGAGAGAGAATGCAACGTGCTCATGAATACTATATCAAACGAGAAGA
AGAAAGATTGAAGGAGAAACAGAATGAACTTGAAACAGCGAGGAAAGAGC
TTGATGACATCAAAATaagagaaaatcaagaaaataaagTTATAGAAACT
TCTACTTCAAATGAAAGTGTTTCATTGGATCGAAAGACTTTTCCACGTTT
TTACACAAAACTCGAAAGGTTGACATGGGGTATCGAAACCTATTTTGAGC
GTAAAACGAGTGATGTGAGATTATACGATTCTTATGAAGCAAGGTTTGCA
GACGTGTCAAAATTGATGGCTCATAGAAATATGTATTTGAATGctaaaat
gtttttcttgaaGAAAGATTTCGAATCGAATGctcaaaataagttttacc
ttcATAATCAAAAGGTCTCGGGCGAGGAAGACAAATCAATGAACGATAAA
TTCACTTTTGGACTTGACGTTGAGAAATTCAGCAATGCATTCTGGGAGAA
AGGACATTTTGTGCTACTCCACCCCAGTCTCCAAAATAGtataattttac
attttgaaaGCTTTCAGGTTGCTGGATTGTCGGAAGAGTATTATCATGGA
GATAAAAATTCCGCAATTATTTTCGGAACACTTGATGAAAATTTGTTGCG
ACAAATACACAGCTTGTAGATAATactgaaaatttatcattgTTCTTAGT
TTTATCTGATAGTCTAGATAGATCAATTCTTAAAACACATTACTAGTATA
GGAAATtacctaaaaaaaattaaaaatgcacccatttttttgtaaatagc
CATGGATTTCAATCCTTACAATGATGTTTTAAGTTTTCATGGTGCCGTAG
CCTCATATCATATGCagcatttttctttatttgagCTTTTTAATATTTCC
TCTTCGTCTCTCCTTTTAGCGaaacattaaaattaaaaaaaagatcagCC
AAAGAAAATGTCATCTGCAAATAGGCCTTGTGaaagggtcttcttttagc
tggatacacaGTAAGGGTTTGTTTGGGGACTTCTGAGTTGCAAGTCTGGC
AGTTAAAATATGATGTATCTTTAAAAGTTTCGACTTTTACCCGTTTTGAT
TTGTTTCGCACATtcattgtgtcgacatctcattttcaggtggcttcagc
aaaataagatatgaaatcaaactacagtgtaagggtcagaaaaattcggt
aaaatgcactgtaagggtaccttttcactgctcaaagGCGGTACTGTAAG
GATCCGATTTTGGAAGACATTTTTTGGCGGCCCATACTGTCGTTTAGAAA
ACGAGTGCCCCTTATCCTTAATTAATTGATAATAAAACGCTCTGTTgaca
gttgggtgtttaagataaaaacggcaattattgctcttttcggcaattat
tgccgaaaacggcattTTTTTCAACGAtcaaatgctgaatcagcagaaaa
ataaaaaaagtaaataaatgaaaagttGGTTCTATTATTGAACAcatggt
atttgacaccctcgcgataagtaggcTTATTGTgtctcgtttagttttgt
tttcaacttgtttttgttggaaatgtaGATAGAAAAATCGAgtcatttgt
aaacaaacttacaacgggggttttgttatctctttctagctgtgtttcgg
catcgatgcaggatctttttacatactattttagaacttttcatgttatt
gagcaacaaaaaatttaaaaaatcactttcaaaaatccgaaaaacctttt
tctcgatgctattttacaattttcaaacacctctgacatctttgccctta
taaggacaacacattttgctggTACAGCATTTCatcattgaaaaaattgc
cgttttcggaaATAATTGCCTCTAGAAAAGCaataattgccgtttttatc
ttaaacacccaactggtTGATGCCTaggtttttttattcaattttgtaat
tttatatatctatatattaatagccgtagtctgtatgtcattttgtttgt
tttttgtgtgtcactttcgttttcgaacgcaatgttttgttcttttaaaa
gatgacttttgctNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcatcgtgttta
agccaccttcccaacatccaaaggactttaaatgcgttcagcaaacagct
aaaccggcgtgcgacgccgggtaccggctagtatttTATAATAAAACAAT
AATTATAATAGTTACATGCCTTTTTATAAGGTTCAAAACAATATGCTGGA
TGCTTGGCTGGTCTTCTTCGTAATTTTAGAAGACTTAAAGCTGTtcacat
aattttttataatatgCTTACTCAATGACTTAATTCCCATTTCTGAAATC
TAAGTAAGACTTCTTCTTAAATTCatatatttctgaaaaaaatgttCTCA
CGAAACGTTCTTATCGTAAGAAAAGCATGAACAGTCAGCCCTCTCTTATT
CGAATCTCTACAAGTAGAATACTTAAAAATACTCTTCGTaactcgaatct
ttctctaatttgaaagaaatttctttatCCCTGAATGATCGAATTGGATA
GAGTATATATAACTGTATCtagaaatgttttcaaaaagattccaTATAGT
GATCACATCATTCActgattttatttaaaattccTACCATCATTGCAAAA
CGTGGCTCATGAAAATCATTGGTGACACCATCAACACACCATTCACTATA
ATTGTTATAAATGTCTGTTTCATGACATGTTCTTTCGAATTCCAAACAAA
GTTCAACTTTCTGCGGATGGAGTAACACCAAACTGGCTTTTTCCCATAAT
CCTCTgtaaagatcttcaaacataaAGGTATTATCATCACCATAATCAAA
AGCATCCCAGGGATCATCGCTCTCGATTCCCGTAAAAATATAATGCGTAT
ACGAGTCAGGTAAACTTTCAAGACAGAGTGAATCTCGTTTCATGAAGATA
TATTTTGATGTCCTGTACGGAGTATTGTCTTCCATCATTTTCGAAATCCC
CTTAAACCATTCCTCATAAGAGTCGTATAAACTATGACTCGATTTCTTTC
CTTGGAAGAATGTCTCAGCTCCCCAAACCATATGTTCTATATCCTCATGC
GGtccaattttcattttgatatctTCAATCTGGCCTTTCACATTGTCTAT
AATATCTCTTGTTTCGTGATattcatttttaagtttttccacATTCTTTC
TGTAGACTTTTTCATCTCTGTTCATTTCAAGTTTTACTCCTTCAATTtca
ttggtcaatttttcaatgTCTTCTTCATAACCCTTCTTGATTTTTACCAC
CCTTTCGTCAACCAGTTGTCTTGTGTGTACATTTTGTTTAGGCACTTTTG
GTGATGACATCTTATTTCGTTGGCAAATCgatacttttttctttgatttt
ttttctgcaagAAGAGAAATTTTAATTGTGAAACTTaattaaaaattaat
caaagaAATATACTAGAAAATTCAAGGTAAAACttcttacagcgcTTTAA
TACACAAGATATTCTAAAAGGGCGTTAAGCATTGTTTTTATCGGTCGACA
CGAAATCTTCAAGAAATGCAAGCAAAAATCAAGTTATAATCGTAAATAGC
CGTTACGATAGTCGTTACATTGAAGGGAGCGTTACATTGAGAGCGATTTT
GCCTAAATTTgcttggaaaatttcaaaaattcgccgaaaaaattgatgtt
tgtaaagCAGCGCCCTTAAGCAAGACAAACACTTCTTATCATTCGCCAAC
ATTTTTGcttaataattttcaattttggtgaGAATCACGGTACATGCTTt
ttatagaacaattttataagaacaagaagactgccaaaaaataagaacaa
tttaagaacacaCGTGAGCCTGGAATAGCTAGATTATAAGAGAACTAAGG
TGAAGTTATTAAAAAATACTGtcagtgaaaatttaaaaaaatctcaattt
ttttcttagttttaAAACATGCTAAGAGAAAAAATTGAGGCTCAAAGGAG
GgccagaaaaaaagaaaaagcctATCCTTGTTGTTTTTCTCTCGAAATAC
TAACTATTTTTATCAGCAAATGAGCCATTTCAATAACTTTACtaactatt
ttgaaaattctcaacATTAATACCCATGATTTTGGAttaccgtaaatcct
cgaataagcgcccgggcgcttttttaattttccaggcCCTAAGGGGGCGT
ATATTCAAGcagggcgcttattcgaggatttacggtattAAAACTGTATT
ATTTACAAAGAGATTTTATTCAAGACTCCAACCATCATTGCAAAACTTGG
TTCATGGAAATCACTGGTGACATCAATTTGCCATTGGCTATAATCATTAT
AATTATTTGTTTCATGCCAGGCACGTTCGAACTCCAAACATTGCTCAATT
TTCTTCGGATGGAGTAATATAAAACTACCTTTTTCCCATAATCCTCTgta
aagatcttcaaacatgaaCATATGGTCATCTGTACAGTCGAAAGCATCCC
AAGGGTCATCGTTCTCGACTCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00009089-exon-sc0000090-1491911889:107046..107074 | TCONS_00009089-exon-sc0000090-1491911889:107046..107074 | Clytia hemisphaerica | exon |
TCONS_00009089-exon-sc0000090-1510915933:107046..107074 | TCONS_00009089-exon-sc0000090-1510915933:107046..107074 | Clytia hemisphaerica | exon |
TCONS_00009089-exon-sc0000090-1575043694:107046..107074 | TCONS_00009089-exon-sc0000090-1575043694:107046..107074 | Clytia hemisphaerica | exon |
TCONS_00009089-exon-sc0000090-1491911889:120135..120269 | TCONS_00009089-exon-sc0000090-1491911889:120135..120269 | Clytia hemisphaerica | exon |
TCONS_00009089-exon-sc0000090-1510915933:120135..120269 | TCONS_00009089-exon-sc0000090-1510915933:120135..120269 | Clytia hemisphaerica | exon |
TCONS_00009089-exon-sc0000090-1575043694:120135..120269 | TCONS_00009089-exon-sc0000090-1575043694:120135..120269 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000090 | supercontig | sc0000090:107046..120269 + |
Blast
The following BLAST results are available for this feature:
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