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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009088 ID=TCONS_00009088|Name=TCONS_00009088|organism=Clytia hemisphaerica|type=transcript|length=2302bp
ACTTTTTGCAGAAGAACTGAACTCTATTTGGTTGAATATTACGATTGATT
AtcttaaaaaatgaatttattacAATATTTAAACTAAGAAGAAGAAGGCT
ATGAAAATATCTGTGAATCCAGAATTAATTcctactttgaaataaaaaat
aaaatatttaattgATATTCGCAATATTTTGCTTAATTTTCTTTACATTA
CAGACGGCAGTGACACGGAATCATTCTGAGAAGTCCATCAATTCCATCCT
TGATTTCATCTCAACTTCTAATCAGGTACACATGCCAGATACTTTCTCAG
ATATCTTCATATTATGAGTATTAACGAAAATGCTTGATATAACTTTATGT
ACTCACTGAGGCAAACTCAGATATCTTCATATAATGGTTATTACAACGCT
TGATAACTTCATTTACTCACTGAGGCAAAACCCGTTTTCCAAATATAATC
ACAGGTACACATGCCAGATACTTTCTTAAATATCTTCATATAATGGTTAT
TACAACGCTTGATAACTTTATGTACTCATTGAGGCAAACTCAGATATCTT
CATATAATGGTTATTACAACGCTTGATAACTTCATGTACTCACTGAGGCA
AAATACGTTTTCCAAATATAATCACAGGTACACATGCCAGATACTTTCTC
AGATATCTTTATATAATGATTATTACAACGTTTGATAACTTCATGTACTC
ACTGAGGCAAAATACGTTTTCCAAATATAATCACTGAACGTTTGCTACCC
CAAAAATAATCATTCGGCACGCCCTTGACATTCCACCGATCAGTGTCTAT
TTCTTTTCTGAACTTGGTCATGTTCATACTCTTCTCATACTTAAGAGGAT
GAAGTAAAGTTAATTTTCCATTATTCCAAAGATCTTTGATTGTAAGTGCA
TCTTCTTTGACTCCAATTCCTTCTGGAGCATCTGATTTACCTGGATTCAC
TCTTTTTATCAATAAGAACCACAATGTCTCTTTATACcgacaaacatttt
ttttgatgaaaaagaaattggttGTTTGGTAGACGTTGTAGTTCACCATG
ACTGAGCAAACGTTTCGATACCATGATTGGTAATCTTGGAACTGGAATTT
ATTATCAGCTGCCCATATCAACTTTTTGGTTAAAGGAAAGTCCATAATCA
TCTCGTTAAACTCCATTTTGACGTTGGTTTTCAGGCTTTTAAGTTCATTC
CCTAAAGTTTGaatagttttttcaaattcttttgttttttcgtgAAGTTC
CTCATTTTCCTTTTCAAGATCTTTAACTTTCATCTCTCGCTTCTTTTGTT
CGCCTTCTATTTGTTGTCGATTGTTGTCTGCAAATCCGTCGAtatcatta
cgtaatgtttcaACAGTCTTCTCCAAGTTGCTCAGTTTCTCACTCATCGA
CAGTTGATTATTGCTGTTCGCCTTCAACCCTTCAAtatcattacgtaatg
tttcaACAGTCACGTGATTGTCAGAACCTGTCAGAGATTTTCTCAAATCA
CTTTCATGTTCGGATTTGAGCTTCATGAGTTGATTTTCATGTTTCAGCGC
TTGGTTTTCTTTCTCCAAGGCCAGACATCTCTCCTGTAATGTTTGAGTAG
CCTCCATTATCTTTGTCTTATTTGTATTGTCCATTTCTAACAACTGAATT
TTGTGTTCCAACTTTAAAGTTTGGACTTGTCTTTCGTAGTCTTCTTTCAG
TTTTATCATGTTGCCGTTGTCAGTTGAATTATTATTGCTAGCGCAATGAG
CCAAATTTCTTTCATCACAATGAGCTAAGTTTCTTTCCATATTTTCCTGC
CTTTATTAAAACGATAACTTCGTCAGTCTTCTTTACAAAGCTTGCAATAT
AATTTCTTTTATTAAGAATTTgaggtttttttaaataagcagTTTCCAAT
TACAACTTTAGGCTTTATTTACATGACGACGACCTAGTATTAGAAAAGAA
CTTTTATAATTGCTTATACAACATCTCTATTTATTTTGATAACATACTAA
GTAGGTCTATTATACTAGAACAGTGCTCACATCACTGGATAACGACCGcc
ttaaatttgatgaagaattcatCGGTTTAGACAATGATCCACTTCGACAC
TCTCGTTTGTGTGATTTAACTTgaaatatggatattttttataagcattg
cacttacaANTGTGATTTAACTTgaaatatggatattttttataagcatt
gcacttacaagcatatctaggctcagatatggggaaaaattaagcatatg
gcaaacattacttgagcctacgaaaaatgtttttttcctgattttggcta
gN Run BLAST on NCBI transcript from alignment at sc0000090:102515..104816+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009088 ID=TCONS_00009088|Name=TCONS_00009088|organism=Clytia hemisphaerica|type=transcript|length=2302bp|location=Sequence derived from alignment at sc0000090:102515..104816+ (Clytia hemisphaerica)
ACTTTTTGCAGAAGAACTGAACTCTATTTGGTTGAATATTACGATTGATT
AtcttaaaaaatgaatttattacAATATTTAAACTAAGAAGAAGAAGGCT
ATGAAAATATCTGTGAATCCAGAATTAATTcctactttgaaataaaaaat
aaaatatttaattgATATTCGCAATATTTTGCTTAATTTTCTTTACATTA
CAGACGGCAGTGACACGGAATCATTCTGAGAAGTCCATCAATTCCATCCT
TGATTTCATCTCAACTTCTAATCAGGTACACATGCCAGATACTTTCTCAG
ATATCTTCATATTATGAGTATTAACGAAAATGCTTGATATAACTTTATGT
ACTCACTGAGGCAAACTCAGATATCTTCATATAATGGTTATTACAACGCT
TGATAACTTCATTTACTCACTGAGGCAAAACCCGTTTTCCAAATATAATC
ACAGGTACACATGCCAGATACTTTCTTAAATATCTTCATATAATGGTTAT
TACAACGCTTGATAACTTTATGTACTCATTGAGGCAAACTCAGATATCTT
CATATAATGGTTATTACAACGCTTGATAACTTCATGTACTCACTGAGGCA
AAATACGTTTTCCAAATATAATCACAGGTACACATGCCAGATACTTTCTC
AGATATCTTTATATAATGATTATTACAACGTTTGATAACTTCATGTACTC
ACTGAGGCAAAATACGTTTTCCAAATATAATCACTGAACGTTTGCTACCC
CAAAAATAATCATTCGGCACGCCCTTGACATTCCACCGATCAGTGTCTAT
TTCTTTTCTGAACTTGGTCATGTTCATACTCTTCTCATACTTAAGAGGAT
GAAGTAAAGTTAATTTTCCATTATTCCAAAGATCTTTGATTGTAAGTGCA
TCTTCTTTGACTCCAATTCCTTCTGGAGCATCTGATTTACCTGGATTCAC
TCTTTTTATCAATAAGAACCACAATGTCTCTTTATACcgacaaacatttt
ttttgatgaaaaagaaattggttGTTTGGTAGACGTTGTAGTTCACCATG
ACTGAGCAAACGTTTCGATACCATGATTGGTAATCTTGGAACTGGAATTT
ATTATCAGCTGCCCATATCAACTTTTTGGTTAAAGGAAAGTCCATAATCA
TCTCGTTAAACTCCATTTTGACGTTGGTTTTCAGGCTTTTAAGTTCATTC
CCTAAAGTTTGaatagttttttcaaattcttttgttttttcgtgAAGTTC
CTCATTTTCCTTTTCAAGATCTTTAACTTTCATCTCTCGCTTCTTTTGTT
CGCCTTCTATTTGTTGTCGATTGTTGTCTGCAAATCCGTCGAtatcatta
cgtaatgtttcaACAGTCTTCTCCAAGTTGCTCAGTTTCTCACTCATCGA
CAGTTGATTATTGCTGTTCGCCTTCAACCCTTCAAtatcattacgtaatg
tttcaACAGTCACGTGATTGTCAGAACCTGTCAGAGATTTTCTCAAATCA
CTTTCATGTTCGGATTTGAGCTTCATGAGTTGATTTTCATGTTTCAGCGC
TTGGTTTTCTTTCTCCAAGGCCAGACATCTCTCCTGTAATGTTTGAGTAG
CCTCCATTATCTTTGTCTTATTTGTATTGTCCATTTCTAACAACTGAATT
TTGTGTTCCAACTTTAAAGTTTGGACTTGTCTTTCGTAGTCTTCTTTCAG
TTTTATCATGTTGCCGTTGTCAGTTGAATTATTATTGCTAGCGCAATGAG
CCAAATTTCTTTCATCACAATGAGCTAAGTTTCTTTCCATATTTTCCTGC
CTTTATTAAAACGATAACTTCGTCAGTCTTCTTTACAAAGCTTGCAATAT
AATTTCTTTTATTAAGAATTTgaggtttttttaaataagcagTTTCCAAT
TACAACTTTAGGCTTTATTTACATGACGACGACCTAGTATTAGAAAAGAA
CTTTTATAATTGCTTATACAACATCTCTATTTATTTTGATAACATACTAA
GTAGGTCTATTATACTAGAACAGTGCTCACATCACTGGATAACGACCGcc
ttaaatttgatgaagaattcatCGGTTTAGACAATGATCCACTTCGACAC
TCTCGTTTGTGTGATTTAACTTgaaatatggatattttttataagcattg
cacttacaANTGTGATTTAACTTgaaatatggatattttttataagcatt
gcacttacaagcatatctaggctcagatatggggaaaaattaagcatatg
gcaaacattacttgagcctacgaaaaatgtttttttcctgattttggcta
gN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009088-exon-sc0000090-1491911889:102515..104816 | TCONS_00009088-exon-sc0000090-1491911889:102515..104816 | Clytia hemisphaerica | exon |
| TCONS_00009088-exon-sc0000090-1510915933:102515..104816 | TCONS_00009088-exon-sc0000090-1510915933:102515..104816 | Clytia hemisphaerica | exon |
| TCONS_00009088-exon-sc0000090-1575043694:102515..104816 | TCONS_00009088-exon-sc0000090-1575043694:102515..104816 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000090 | supercontig | sc0000090:102515..104816 + |
Blast
The following BLAST results are available for this feature:
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