TCONS_00009088 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009088
Unique NameTCONS_00009088
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2302

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009088 ID=TCONS_00009088|Name=TCONS_00009088|organism=Clytia hemisphaerica|type=transcript|length=2302bp
ACTTTTTGCAGAAGAACTGAACTCTATTTGGTTGAATATTACGATTGATT
AtcttaaaaaatgaatttattacAATATTTAAACTAAGAAGAAGAAGGCT
ATGAAAATATCTGTGAATCCAGAATTAATTcctactttgaaataaaaaat
aaaatatttaattgATATTCGCAATATTTTGCTTAATTTTCTTTACATTA
CAGACGGCAGTGACACGGAATCATTCTGAGAAGTCCATCAATTCCATCCT
TGATTTCATCTCAACTTCTAATCAGGTACACATGCCAGATACTTTCTCAG
ATATCTTCATATTATGAGTATTAACGAAAATGCTTGATATAACTTTATGT
ACTCACTGAGGCAAACTCAGATATCTTCATATAATGGTTATTACAACGCT
TGATAACTTCATTTACTCACTGAGGCAAAACCCGTTTTCCAAATATAATC
ACAGGTACACATGCCAGATACTTTCTTAAATATCTTCATATAATGGTTAT
TACAACGCTTGATAACTTTATGTACTCATTGAGGCAAACTCAGATATCTT
CATATAATGGTTATTACAACGCTTGATAACTTCATGTACTCACTGAGGCA
AAATACGTTTTCCAAATATAATCACAGGTACACATGCCAGATACTTTCTC
AGATATCTTTATATAATGATTATTACAACGTTTGATAACTTCATGTACTC
ACTGAGGCAAAATACGTTTTCCAAATATAATCACTGAACGTTTGCTACCC
CAAAAATAATCATTCGGCACGCCCTTGACATTCCACCGATCAGTGTCTAT
TTCTTTTCTGAACTTGGTCATGTTCATACTCTTCTCATACTTAAGAGGAT
GAAGTAAAGTTAATTTTCCATTATTCCAAAGATCTTTGATTGTAAGTGCA
TCTTCTTTGACTCCAATTCCTTCTGGAGCATCTGATTTACCTGGATTCAC
TCTTTTTATCAATAAGAACCACAATGTCTCTTTATACcgacaaacatttt
ttttgatgaaaaagaaattggttGTTTGGTAGACGTTGTAGTTCACCATG
ACTGAGCAAACGTTTCGATACCATGATTGGTAATCTTGGAACTGGAATTT
ATTATCAGCTGCCCATATCAACTTTTTGGTTAAAGGAAAGTCCATAATCA
TCTCGTTAAACTCCATTTTGACGTTGGTTTTCAGGCTTTTAAGTTCATTC
CCTAAAGTTTGaatagttttttcaaattcttttgttttttcgtgAAGTTC
CTCATTTTCCTTTTCAAGATCTTTAACTTTCATCTCTCGCTTCTTTTGTT
CGCCTTCTATTTGTTGTCGATTGTTGTCTGCAAATCCGTCGAtatcatta
cgtaatgtttcaACAGTCTTCTCCAAGTTGCTCAGTTTCTCACTCATCGA
CAGTTGATTATTGCTGTTCGCCTTCAACCCTTCAAtatcattacgtaatg
tttcaACAGTCACGTGATTGTCAGAACCTGTCAGAGATTTTCTCAAATCA
CTTTCATGTTCGGATTTGAGCTTCATGAGTTGATTTTCATGTTTCAGCGC
TTGGTTTTCTTTCTCCAAGGCCAGACATCTCTCCTGTAATGTTTGAGTAG
CCTCCATTATCTTTGTCTTATTTGTATTGTCCATTTCTAACAACTGAATT
TTGTGTTCCAACTTTAAAGTTTGGACTTGTCTTTCGTAGTCTTCTTTCAG
TTTTATCATGTTGCCGTTGTCAGTTGAATTATTATTGCTAGCGCAATGAG
CCAAATTTCTTTCATCACAATGAGCTAAGTTTCTTTCCATATTTTCCTGC
CTTTATTAAAACGATAACTTCGTCAGTCTTCTTTACAAAGCTTGCAATAT
AATTTCTTTTATTAAGAATTTgaggtttttttaaataagcagTTTCCAAT
TACAACTTTAGGCTTTATTTACATGACGACGACCTAGTATTAGAAAAGAA
CTTTTATAATTGCTTATACAACATCTCTATTTATTTTGATAACATACTAA
GTAGGTCTATTATACTAGAACAGTGCTCACATCACTGGATAACGACCGcc
ttaaatttgatgaagaattcatCGGTTTAGACAATGATCCACTTCGACAC
TCTCGTTTGTGTGATTTAACTTgaaatatggatattttttataagcattg
cacttacaANTGTGATTTAACTTgaaatatggatattttttataagcatt
gcacttacaagcatatctaggctcagatatggggaaaaattaagcatatg
gcaaacattacttgagcctacgaaaaatgtttttttcctgattttggcta
gN
Run BLAST on NCBI

transcript from alignment at sc0000090:102515..104816+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009088 ID=TCONS_00009088|Name=TCONS_00009088|organism=Clytia hemisphaerica|type=transcript|length=2302bp|location=Sequence derived from alignment at sc0000090:102515..104816+ (Clytia hemisphaerica)
ACTTTTTGCAGAAGAACTGAACTCTATTTGGTTGAATATTACGATTGATT AtcttaaaaaatgaatttattacAATATTTAAACTAAGAAGAAGAAGGCT ATGAAAATATCTGTGAATCCAGAATTAATTcctactttgaaataaaaaat aaaatatttaattgATATTCGCAATATTTTGCTTAATTTTCTTTACATTA CAGACGGCAGTGACACGGAATCATTCTGAGAAGTCCATCAATTCCATCCT TGATTTCATCTCAACTTCTAATCAGGTACACATGCCAGATACTTTCTCAG ATATCTTCATATTATGAGTATTAACGAAAATGCTTGATATAACTTTATGT ACTCACTGAGGCAAACTCAGATATCTTCATATAATGGTTATTACAACGCT TGATAACTTCATTTACTCACTGAGGCAAAACCCGTTTTCCAAATATAATC ACAGGTACACATGCCAGATACTTTCTTAAATATCTTCATATAATGGTTAT TACAACGCTTGATAACTTTATGTACTCATTGAGGCAAACTCAGATATCTT CATATAATGGTTATTACAACGCTTGATAACTTCATGTACTCACTGAGGCA AAATACGTTTTCCAAATATAATCACAGGTACACATGCCAGATACTTTCTC AGATATCTTTATATAATGATTATTACAACGTTTGATAACTTCATGTACTC ACTGAGGCAAAATACGTTTTCCAAATATAATCACTGAACGTTTGCTACCC CAAAAATAATCATTCGGCACGCCCTTGACATTCCACCGATCAGTGTCTAT TTCTTTTCTGAACTTGGTCATGTTCATACTCTTCTCATACTTAAGAGGAT GAAGTAAAGTTAATTTTCCATTATTCCAAAGATCTTTGATTGTAAGTGCA TCTTCTTTGACTCCAATTCCTTCTGGAGCATCTGATTTACCTGGATTCAC TCTTTTTATCAATAAGAACCACAATGTCTCTTTATACcgacaaacatttt ttttgatgaaaaagaaattggttGTTTGGTAGACGTTGTAGTTCACCATG ACTGAGCAAACGTTTCGATACCATGATTGGTAATCTTGGAACTGGAATTT ATTATCAGCTGCCCATATCAACTTTTTGGTTAAAGGAAAGTCCATAATCA TCTCGTTAAACTCCATTTTGACGTTGGTTTTCAGGCTTTTAAGTTCATTC CCTAAAGTTTGaatagttttttcaaattcttttgttttttcgtgAAGTTC CTCATTTTCCTTTTCAAGATCTTTAACTTTCATCTCTCGCTTCTTTTGTT CGCCTTCTATTTGTTGTCGATTGTTGTCTGCAAATCCGTCGAtatcatta cgtaatgtttcaACAGTCTTCTCCAAGTTGCTCAGTTTCTCACTCATCGA CAGTTGATTATTGCTGTTCGCCTTCAACCCTTCAAtatcattacgtaatg tttcaACAGTCACGTGATTGTCAGAACCTGTCAGAGATTTTCTCAAATCA CTTTCATGTTCGGATTTGAGCTTCATGAGTTGATTTTCATGTTTCAGCGC TTGGTTTTCTTTCTCCAAGGCCAGACATCTCTCCTGTAATGTTTGAGTAG CCTCCATTATCTTTGTCTTATTTGTATTGTCCATTTCTAACAACTGAATT TTGTGTTCCAACTTTAAAGTTTGGACTTGTCTTTCGTAGTCTTCTTTCAG TTTTATCATGTTGCCGTTGTCAGTTGAATTATTATTGCTAGCGCAATGAG CCAAATTTCTTTCATCACAATGAGCTAAGTTTCTTTCCATATTTTCCTGC CTTTATTAAAACGATAACTTCGTCAGTCTTCTTTACAAAGCTTGCAATAT AATTTCTTTTATTAAGAATTTgaggtttttttaaataagcagTTTCCAAT TACAACTTTAGGCTTTATTTACATGACGACGACCTAGTATTAGAAAAGAA CTTTTATAATTGCTTATACAACATCTCTATTTATTTTGATAACATACTAA GTAGGTCTATTATACTAGAACAGTGCTCACATCACTGGATAACGACCGcc ttaaatttgatgaagaattcatCGGTTTAGACAATGATCCACTTCGACAC TCTCGTTTGTGTGATTTAACTTgaaatatggatattttttataagcattg cacttacaANTGTGATTTAACTTgaaatatggatattttttataagcatt gcacttacaagcatatctaggctcagatatggggaaaaattaagcatatg gcaaacattacttgagcctacgaaaaatgtttttttcctgattttggcta gN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005093XLOC_005093Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009088-exon-sc0000090-1491911889:102515..104816TCONS_00009088-exon-sc0000090-1491911889:102515..104816Clytia hemisphaericaexon
TCONS_00009088-exon-sc0000090-1510915933:102515..104816TCONS_00009088-exon-sc0000090-1510915933:102515..104816Clytia hemisphaericaexon
TCONS_00009088-exon-sc0000090-1575043694:102515..104816TCONS_00009088-exon-sc0000090-1575043694:102515..104816Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000090supercontigsc0000090:102515..104816 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.158974 0.075869 0.769866 0.62242 1.62259 1.00611 6.68169 6.49528 5.15105 5.28987 3.51584 3.53522 7.77774 4.54477 2.53882 3.90442 4.75816 2.67466 9.72333 13.0558 2.5976 2.24274 0.937071 1.66788 1.96503 3.2371 4.0459 3.30363 1.04256 0.791071
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009088 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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