TCONS_00009087 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009087
Unique NameTCONS_00009087
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1987

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009087 ID=TCONS_00009087|Name=TCONS_00009087|organism=Clytia hemisphaerica|type=transcript|length=1987bp
TTAGATAATCCCATGTAAAAAATCTATACTTACAAtagcaaaaaataaat
agaaataatttgcaaaaatgTCTGACGATGATTTTATGGACGACGATGAA
GAATATGATTTGGAATATTCGACTGATGACAATTCAGAGCCAGATGTTGA
TCTAGAGAATCAATATTACAATTCAAAAGCCCTCAAAGAAGAAGACCCCG
ACGAAGCTATCAAAAGCTTTGAAAAGGTATTGGAACTTGAACAAGAGAAA
GGTGAATGGGGTTTCAAAGCACTCAAGCAGATGGTCAAAATTAACTATAA
ACTGCAAAAGTATGGGAATATGATGACAAGATATAAAGAACTGTTGACAT
ATATCAAGACGGCAGTGACACGGAATCATTCTGAGAAGTCCATCAATTCC
ATCCTTGATTTCATCTCAACTTCTAATCAGGTACACATGCCAGATACTTT
CTCAGATATCTTCATATTATGAGTATTAACGAAAATGCTTGATATAACTT
TATGTACTCACTGAGGCAAACTCAGATATCTTCATATAATGGTTATTACA
ACGCTTGATAACTTCATTTACTCACTGAGGCAAAACCCGTTTTCCAAATA
TAATCACAGGTACACATGCCAGATACTTTCTTAAATATCTTCATATAATG
GTTATTACAACGCTTGATAACTTTATGTACTCATTGAGGCAAACTCAGAT
ATCTTCATATAATGGTTATTACAACGCTTGATAACTTCATGTACTCACTG
AGGCAAAATACGTTTTCCAAATATAATCACAGGTACACATGCCAGATACT
TTCTCAGATATCTTTATATAATGATTATTACAACGTTTGATAACTTCATG
TACTCACTGAGGCAAAATACGTTTTCCAAATATAATCACTGAACGTTTGC
TACCCCAAAAATAATCATTCGGCACGCCCTTGACATTCCACCGATCAGTG
TCTATTTCTTTTCTGAACTTGGTCATGTTCATACTCTTCTCATACTTAAG
AGGATGAAGTAAAGTTAATTTTCCATTATTCCAAAGATCTTTGATTGTAA
GTGCATCTTCTTTGACTCCAATTCCTTCTGGAGCATCTGATTTACCTGGA
TTCACTCTTTTTATCAATAAGAACCACAATGTCTCTTTATACcgacaaac
attttttttgatgaaaaagaaattggttGTTTGGTAGACGTTGTAGTTCA
CCATGACTGAGCAAACGTTTCGATACCATGATTGGTAATCTTGGAACTGG
AATTTATTATCAGCTGCCCATATCAACTTTTTGGTTAAAGGAAAGTCCAT
AATCATCTCGTTAAACTCCATTTTGACGTTGGTTTTCAGGCTTTTAAGTT
CATTCCCTAAAGTTTGaatagttttttcaaattcttttgttttttcgtgA
AGTTCCTCATTTTCCTTTTCAAGATCTTTAACTTTCATCTCTCGCTTCTT
TTGTTCGCCTTCTATTTGTTGTCGATTGTTGTCTGCAAATCCGTCGAtat
cattacgtaatgtttcaACAGTCTTCTCCAAGTTGCTCAGTTTCTCACTC
ATCGACAGTTGATTATTGCTGTTCGCCTTCAACCCTTCAAtatcattacg
taatgtttcaACAGTCACGTGATTGTCAGAACCTGTCAGAGATTTTCTCA
AATCACTTTCATGTTCGGATTTGAGCTTCATGAGTTGATTTTCATGTTTC
AGCGCTTGGTTTTCTTTCTCCAAGGCCAGACATCTCTCCTGTAATGTTTG
AGTAGCCTCCATTATCTTTGTCTTATTTGTATTGTCCATTTCTAACAACT
GAATTTTGTGTTCCAACTTTAAAGTTTGGACTTGTCTTTCGTAGTCTTCT
TTCAGTTTTATCATGTTGCCGTTGTCAGTTGAATTATTATTGCTAGCGCA
ATGAGCCAAATTTCTTTCATCACAATGAGCTAAGTTTCTTTCCATATTTT
CCTGCCTTTATTAAAACGATAACTTCGTCAGTCTTCT
Run BLAST on NCBI

transcript from alignment at sc0000090:100307..104346+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009087 ID=TCONS_00009087|Name=TCONS_00009087|organism=Clytia hemisphaerica|type=transcript|length=4040bp|location=Sequence derived from alignment at sc0000090:100307..104346+ (Clytia hemisphaerica)
TTAGATAATCCCATGTAAAAAATCTATACTTACAAtagcaaaaaataaat
agaaataatttgcaaaaatgTCTGACGATGATTTTATGGACGACGATGAA
GAATATGATTTGGTATGTATATAATGTTTCACGCAAAAAGGGGATTTGGT
CTAATATTACCAGGGTTAAATGACAGTGAATCAATGTCTGTACATTGCTT
TCAGAcatttgtaaatttgaataaatctgTAAAGGGTTTTTTACGCTTTT
TTTGCTTTAATGgtgttgttttgaaatcaattcCACTTCTTTTGCTGTTG
CTTTAAAATTTATACCACTTTTCACTTGATACCAACCGACGTTGAAAGGG
TTTAAGAGTTGCAAGGACATCTCTTTGACTCAAAGACTTTGAGTGGCTaa
ttaaattgacaaaaatttctattacTATTATGGTgatatcaaaatattaa
aataaccAAGCTCTTTCTTTAATTTAGGAATATTCGACTGATGACAATTC
AGAGCCAGATGTTGATCTAGAGAATCAATATTACAATTCAAAAGCCCTCA
AAGAAGAAGACCCCGACGAAGCTATCAAAAGCTTTGAAAAGGTAGATTTT
TAATGGTAAATAAGATCAAAAGGTGGTTAGACCTATAGCAGAATTGCCCA
TTACTTTAGCTGTCCTGATAATTTCACAAGCGCACAAATCTGGGTGAACT
TTTACGTTGCCTtgaatatatataatataaagtaaaagcttttcgtCCAT
ATCAGAAAATAcgctcccttctcacagacctgataggatttttcagccaa
tggggataaaaataatggaatgAAACTCGatgaggattgatattcccata
tttttatggctggggatttaaattcttttgttttcaagttagaaaattca
gtggggatgggaaaaataacaaaatatttttcagtgaggattggtttatt
tgattattttcaggggggacaaaattggaggataatctTCCGCCggtgac
gatattttggccaatatttccagtgggaaggggtcctagtggggtctgtg
agaaggggtcccagtggggtcagtgagaagggggtgtgaaaATGTTGTCG
AAAATATTGTTGTTTCCTGAAGAAACAATTATATCGGGCATTTTGTAAGC
TGTCAAACATCTTGCAAacgaatttccccaaaaaatgaaatctttgaaat
cttttgcaattcatttttcaatttttctattgCAGGTATTGGAACTTGAA
CAAGAGAAAGGTGAATGGGGTTTCAAAGCACTCAAGCAGATGGTCAAAAT
TAACTATAAACTGGTAAGTTTTCATCTTTAGCATCCAATattaaaaaaga
atcaaaataaNCTATAAACTGGTAAGTTATCATCTTCTACTAGCATCTCC
AGGCCTCcaaatattgaaaaagaaagaaagattcgaaattaATTAGTTAG
TTAGTGAACAACCCTTTTAATCTTTTTACTATAGGTTTCCAATTAGGAGA
AAATAGAAGAAAgatatttttgtcttttttttctaattttttctaattta
aaaagACACAATAAAATTTCGTCTTAGACAAGAGGCCGAACATTTTTCCA
GACACTTTAAAGGTCCAGGTCTGGAAAAGATGGGAAAAACCTTATTGATC
TTATTAAAAGGCAATGCCTGTAATTTAAATTTTAACCAATATCACATTGG
Gcgtttccaaaaaaaatttgaatatgggatagaggatataacattttttg
gaaatttacccccggacggacattgtgacttttgacccccggatAGCAGG
TTTAACCCCAGGACAAGCATCcattgaccccctggacattcaaaattatc
cTCAAacagcaagtttaccccccggacaaggcaaattttatagatttttc
actaccccccggacaattatcctccaccccccatgtacgaacattttctg
gaagagcccattgctaCTTTCACAATAAGAATTACGATCTTGTATTTTAT
TGGGAAATGGAAAAATAGCTTGTAAGTGAGTAAAATAATTTACCCAAAAT
TAATTCGTTTACGTTTTTATTGATATTGACAGCAAAAGTATGGGAATATG
ATGACAAGATATAAAGAACTGTTGACATATATCAAGGTATCCTTTTTACC
TTATTAGATGAATATAAAGCAAGTCTTTGATTGGCTTGAAAATAATACGA
CAAGAATGACTTTTTGCAGAAGAACTGAACTCTATTTGGTTGAATATTAC
GATTGATTAtcttaaaaaatgaatttattacAATATTTAAACTAAGAAGA
AGAAGGCTATGAAAATATCTGTGAATCCAGAATTAATTcctactttgaaa
taaaaaataaaatatttaattgATATTCGCAATATTTTGCTTAATTTTCT
TTACATTACAGACGGCAGTGACACGGAATCATTCTGAGAAGTCCATCAAT
TCCATCCTTGATTTCATCTCAACTTCTAATCAGGTACACATGCCAGATAC
TTTCTCAGATATCTTCATATTATGAGTATTAACGAAAATGCTTGATATAA
CTTTATGTACTCACTGAGGCAAACTCAGATATCTTCATATAATGGTTATT
ACAACGCTTGATAACTTCATTTACTCACTGAGGCAAAACCCGTTTTCCAA
ATATAATCACAGGTACACATGCCAGATACTTTCTTAAATATCTTCATATA
ATGGTTATTACAACGCTTGATAACTTTATGTACTCATTGAGGCAAACTCA
GATATCTTCATATAATGGTTATTACAACGCTTGATAACTTCATGTACTCA
CTGAGGCAAAATACGTTTTCCAAATATAATCACAGGTACACATGCCAGAT
ACTTTCTCAGATATCTTTATATAATGATTATTACAACGTTTGATAACTTC
ATGTACTCACTGAGGCAAAATACGTTTTCCAAATATAATCACTGAACGTT
TGCTACCCCAAAAATAATCATTCGGCACGCCCTTGACATTCCACCGATCA
GTGTCTATTTCTTTTCTGAACTTGGTCATGTTCATACTCTTCTCATACTT
AAGAGGATGAAGTAAAGTTAATTTTCCATTATTCCAAAGATCTTTGATTG
TAAGTGCATCTTCTTTGACTCCAATTCCTTCTGGAGCATCTGATTTACCT
GGATTCACTCTTTTTATCAATAAGAACCACAATGTCTCTTTATACcgaca
aacattttttttgatgaaaaagaaattggttGTTTGGTAGACGTTGTAGT
TCACCATGACTGAGCAAACGTTTCGATACCATGATTGGTAATCTTGGAAC
TGGAATTTATTATCAGCTGCCCATATCAACTTTTTGGTTAAAGGAAAGTC
CATAATCATCTCGTTAAACTCCATTTTGACGTTGGTTTTCAGGCTTTTAA
GTTCATTCCCTAAAGTTTGaatagttttttcaaattcttttgttttttcg
tgAAGTTCCTCATTTTCCTTTTCAAGATCTTTAACTTTCATCTCTCGCTT
CTTTTGTTCGCCTTCTATTTGTTGTCGATTGTTGTCTGCAAATCCGTCGA
tatcattacgtaatgtttcaACAGTCTTCTCCAAGTTGCTCAGTTTCTCA
CTCATCGACAGTTGATTATTGCTGTTCGCCTTCAACCCTTCAAtatcatt
acgtaatgtttcaACAGTCACGTGATTGTCAGAACCTGTCAGAGATTTTC
TCAAATCACTTTCATGTTCGGATTTGAGCTTCATGAGTTGATTTTCATGT
TTCAGCGCTTGGTTTTCTTTCTCCAAGGCCAGACATCTCTCCTGTAATGT
TTGAGTAGCCTCCATTATCTTTGTCTTATTTGTATTGTCCATTTCTAACA
ACTGAATTTTGTGTTCCAACTTTAAAGTTTGGACTTGTCTTTCGTAGTCT
TCTTTCAGTTTTATCATGTTGCCGTTGTCAGTTGAATTATTATTGCTAGC
GCAATGAGCCAAATTTCTTTCATCACAATGAGCTAAGTTTCTTTCCATAT
TTTCCTGCCTTTATTAAAACGATAACTTCGTCAGTCTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005093XLOC_005093Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009087-exon-sc0000090-1491911889:100307..100418TCONS_00009087-exon-sc0000090-1491911889:100307..100418Clytia hemisphaericaexon
TCONS_00009087-exon-sc0000090-1510915933:100307..100418TCONS_00009087-exon-sc0000090-1510915933:100307..100418Clytia hemisphaericaexon
TCONS_00009087-exon-sc0000090-1575043694:100307..100418TCONS_00009087-exon-sc0000090-1575043694:100307..100418Clytia hemisphaericaexon
TCONS_00009087-exon-sc0000090-1491911889:100784..100897TCONS_00009087-exon-sc0000090-1491911889:100784..100897Clytia hemisphaericaexon
TCONS_00009087-exon-sc0000090-1510915933:100784..100897TCONS_00009087-exon-sc0000090-1510915933:100784..100897Clytia hemisphaericaexon
TCONS_00009087-exon-sc0000090-1575043694:100784..100897TCONS_00009087-exon-sc0000090-1575043694:100784..100897Clytia hemisphaericaexon
TCONS_00009087-exon-sc0000090-1491911889:101542..101619TCONS_00009087-exon-sc0000090-1491911889:101542..101619Clytia hemisphaericaexon
TCONS_00009087-exon-sc0000090-1510915933:101542..101619TCONS_00009087-exon-sc0000090-1510915933:101542..101619Clytia hemisphaericaexon
TCONS_00009087-exon-sc0000090-1575043694:101542..101619TCONS_00009087-exon-sc0000090-1575043694:101542..101619Clytia hemisphaericaexon
TCONS_00009087-exon-sc0000090-1491911889:102389..102442TCONS_00009087-exon-sc0000090-1491911889:102389..102442Clytia hemisphaericaexon
TCONS_00009087-exon-sc0000090-1510915933:102389..102442TCONS_00009087-exon-sc0000090-1510915933:102389..102442Clytia hemisphaericaexon
TCONS_00009087-exon-sc0000090-1575043694:102389..102442TCONS_00009087-exon-sc0000090-1575043694:102389..102442Clytia hemisphaericaexon
TCONS_00009087-exon-sc0000090-1491911889:102718..104346TCONS_00009087-exon-sc0000090-1491911889:102718..104346Clytia hemisphaericaexon
TCONS_00009087-exon-sc0000090-1510915933:102718..104346TCONS_00009087-exon-sc0000090-1510915933:102718..104346Clytia hemisphaericaexon
TCONS_00009087-exon-sc0000090-1575043694:102718..104346TCONS_00009087-exon-sc0000090-1575043694:102718..104346Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000090supercontigsc0000090:100307..104346 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.350707	0.204955	0	0	0	0	0	0	0	0	2.52076	0	1.304	3.64115	6.54888	7.71834	5.04585	5.51448	1.28301	0	9.99776	9.62939	4.76904	6.31763	8.15229	6.60548	8.70028	4.91981	3.43998	1.88863
Blast
[Close]
BLAST of TCONS_00009087 vs. Swiss-Prot (Human)
Match: CSN2 (COP9 signalosome complex subunit 2 OS=Homo sapiens GN=COPS2 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.221e-44
Identity = 79/107 (73.83%), Postives = 93/107 (86.92%), Query Frame = 2 
Query:  131 NSEPDVDLENQYYNSKALKEEDPDEAIKSFEKVLELEQEKGEWGFKALKQMVKINYKLQKYGNMMTRYKELLTYIKTAVTRNHSEKSINSILDFISTSNQVHMPDTF 451
            NSEP+VDLENQYYNSKALKE+DP  A+ SF+KVLELE EKGEWGFKALKQM+KIN+KL  +  MM RYK+LLTYI++AVTRN+SEKSINSILD+ISTS Q+ +   F
Sbjct:   25 NSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQMDLLQEF 131
The following BLAST results are available for this feature:
BLAST of TCONS_00009087 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CSN22.221e-4473.83COP9 signalosome complex subunit 2 OS=Homo sapiens... [more]
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